ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59d05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_225089.3| PREDICTED: Rattus norvegicus similar to Contactin associated protein-like 3 precursor (Cell recognition molecule Caspr3) (LOC290952), mRNA Length = 3738 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 279 accaccatttcttctggtgtat 300 |||||||||||||||||||||| Sbjct: 2347 accaccatttcttctggtgtat 2368
>emb|BX004984.6| Zebrafish DNA sequence from clone DKEY-3N4, complete sequence Length = 264738 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 gaataataaataaatcatataa 245 |||||||||||||||||||||| Sbjct: 176553 gaataataaataaatcatataa 176574
>emb|AL953891.10| Zebrafish DNA sequence from clone DKEY-28P22, complete sequence Length = 242282 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 gaataataaataaatcatataa 245 |||||||||||||||||||||| Sbjct: 97743 gaataataaataaatcatataa 97764
>gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete sequence Length = 137052 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 aataataaataaatcatataa 245 ||||||||||||||||||||| Sbjct: 67974 aataataaataaatcatataa 67954
>emb|BX663614.24| Zebrafish DNA sequence from clone DKEY-148L2 in linkage group 6, complete sequence Length = 191715 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 aataataaataaatcatataa 245 ||||||||||||||||||||| Sbjct: 127948 aataataaataaatcatataa 127968
>emb|CR533579.6| Zebrafish DNA sequence from clone CH211-232J20 in linkage group 25, complete sequence Length = 199156 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 aataataaataaatcatataa 245 ||||||||||||||||||||| Sbjct: 55164 aataataaataaatcatataa 55184
>gb|AC111111.11| Mus musculus chromosome 3, clone RP23-201A9, complete sequence Length = 233326 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 aataataaataaatcatataa 245 ||||||||||||||||||||| Sbjct: 192611 aataataaataaatcatataa 192591
>gb|AC110040.8| Mus musculus chromosome 3, clone RP23-276J3, complete sequence Length = 202391 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 aataataaataaatcatataa 245 ||||||||||||||||||||| Sbjct: 181271 aataataaataaatcatataa 181291
>gb|AC144766.18| Medicago truncatula clone mth2-17c2, complete sequence Length = 92099 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 aataataaataaatcatataa 245 ||||||||||||||||||||| Sbjct: 12768 aataataaataaatcatataa 12748
>emb|AL163284.2|HS21C084 Homo sapiens chromosome 21 segment HS21C084 Length = 340000 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 tcttctggtgtatgtagtcttctgt 312 ||||||| ||||||||||||||||| Sbjct: 134068 tcttctgctgtatgtagtcttctgt 134044
>gb|AC149268.21| Medicago truncatula clone mth2-94j16, complete sequence Length = 146810 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 aataaataaatcatataacag 248 ||||||||||||||||||||| Sbjct: 71033 aataaataaatcatataacag 71013
>gb|AC135467.15| Medicago truncatula clone mth2-34h12, complete sequence Length = 114945 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 aataataaataaatcatataa 245 ||||||||||||||||||||| Sbjct: 110341 aataataaataaatcatataa 110321
>emb|AL512641.9| Human DNA sequence from clone RP11-139J15 on chromosome 10 Contains the 5' end of a novel gene (LOC221078) (FLJ23743), two novel genes, the gene for ADP-ribosylation-like factor 8 (ARL8), a programmed cell death 8 (apoptosis-inducing factor) (PDCD8) pseudogene and a CpG island, complete sequence Length = 172688 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 228 aataaataaatcatataacagcacatgat 256 |||||||||||||||| |||| ||||||| Sbjct: 115705 aataaataaatcatatgacagaacatgat 115677
>gb|AC134043.1| Homo sapiens chromosome 5 clone RP11-175K6, complete sequence Length = 154098 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 atccaagaataataaataaat 238 ||||||||||||||||||||| Sbjct: 21212 atccaagaataataaataaat 21232
>gb|AC063918.21| Homo sapiens 3 BAC RP11-49C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97001 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 tatgcaatgaatagaggacaa 48 ||||||||||||||||||||| Sbjct: 27042 tatgcaatgaatagaggacaa 27022
>gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete sequence Length = 159149 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 aataataaataaatcatataa 245 ||||||||||||||||||||| Sbjct: 54392 aataataaataaatcatataa 54372
>gb|AC011376.5| Homo sapiens chromosome 5 clone CTB-11I22, complete sequence Length = 132768 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 atccaagaataataaataaat 238 ||||||||||||||||||||| Sbjct: 82722 atccaagaataataaataaat 82702
>dbj|BS000160.1| Pan troglodytes chromosome 22 clone:PTB-043M13, map 22, complete sequences Length = 141932 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 tcttctggtgtatgtagtcttctgt 312 ||||||| ||||||||||||||||| Sbjct: 38449 tcttctgctgtatgtagtcttctgt 38425
>gb|AC104928.8| Mus musculus chromosome 8, clone RP24-111K8, complete sequence Length = 177873 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 catccaagaataataaataaa 237 ||||||||||||||||||||| Sbjct: 106055 catccaagaataataaataaa 106075
>emb|AL773569.1|HS247E2 Homo sapiens chromosome 21 from PAC RP1-247E2 map 21q22.2,D21S349-MX1, complete sequence Length = 153402 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 tcttctggtgtatgtagtcttctgt 312 ||||||| ||||||||||||||||| Sbjct: 105703 tcttctgctgtatgtagtcttctgt 105679
>emb|AL671888.8| Mouse DNA sequence from clone RP23-247O14 on chromosome X, complete sequence Length = 52491 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 tgtgcatcctaatcctgatca 358 ||||||||||||||||||||| Sbjct: 6226 tgtgcatcctaatcctgatca 6206
>gb|AF500195.1| Oryzias latipes choriogenin H gene, complete cds Length = 2646 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 tatgtttgtcaaacgtttgaa 70 ||||||||||||||||||||| Sbjct: 1714 tatgtttgtcaaacgtttgaa 1734
>gb|AC186002.3| Pan troglodytes BAC clone CH251-86D23 from chromosome 9, complete sequence Length = 162651 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 33903 catgatttggaaacctttta 33922
>gb|AC132385.5| Mus musculus BAC clone RP23-438F21 from chromosome 18, complete sequence Length = 184478 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aataataaataaatcatata 244 |||||||||||||||||||| Sbjct: 7560 aataataaataaatcatata 7541
>emb|CT009691.8| Zebrafish DNA sequence from clone CH73-64E1 in linkage group 5, complete sequence Length = 99497 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ttgtcaaacgtttgaatttt 74 |||||||||||||||||||| Sbjct: 42528 ttgtcaaacgtttgaatttt 42547
>gb|AC125122.4| Mus musculus BAC clone RP24-269O4 from chromosome 18, complete sequence Length = 173614 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aataataaataaatcatata 244 |||||||||||||||||||| Sbjct: 28486 aataataaataaatcatata 28505
>gb|AC125481.23| Medicago truncatula clone mth2-15n13, complete sequence Length = 121953 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aataataaataaatcatata 244 |||||||||||||||||||| Sbjct: 34771 aataataaataaatcatata 34790
>gb|AC146692.14| Medicago truncatula clone mth2-7n20, complete sequence Length = 108084 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aataataaataaatcatata 244 |||||||||||||||||||| Sbjct: 69583 aataataaataaatcatata 69564
>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains three novel pseudogenes, a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A), a pseudogene similar to part of G protein-coupled receptor 116 (GPR116), two novel genes, the 5' end of a novel gene similar to ankyrin repeat domain 20A (ANKRD20A) and three CpG islands, complete sequence Length = 165886 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 82508 catgatttggaaacctttta 82489
>emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chromosome 9 Contains two novel pseudogene, a CDRT15 protein pseudogene, a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A) and two CpG islands, complete sequence Length = 178933 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 135446 catgatttggaaacctttta 135427
>emb|AL513478.10| Human DNA sequence from clone RP11-327I22 on chromosome 9 Contains a pseudogene similar to part of sorting nexin associated golgi protein 1 (SNAG1), the ANKRD20A gene for ankyrin repeat domain 20A, five novel genes, a pseudogene similar to part of eprin A, alpha (PABA peptide hydrolase) (MEP1A) and a CpG island, complete sequence Length = 180498 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 171845 catgatttggaaacctttta 171864
>gb|L19443.1| Human adenovirus F, complete genome Length = 34214 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acatgatttggaaacctttt 269 |||||||||||||||||||| Sbjct: 14051 acatgatttggaaacctttt 14032
>emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on chromosome 9 Contains a pseudogene similar to part of ribosomal protein L7a (RPL7A), three novel genes, three novel pseudogene and two CpG islands, complete sequence Length = 175271 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 170811 catgatttggaaacctttta 170792
>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152737 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 49932 catgatttggaaacctttta 49913
>emb|BX890572.9| Zebrafish DNA sequence from clone CH211-234F20 in linkage group 4 Contains the gene for a novel protein containing two notch (DSL) domains and an EF hand domain, the gene for a novel protein similar to vertebrate myosin binding protein H (MYBPH), the gene for a novel protein sinilar to human and mouse CWF19-like 1, cell cycle control (S. pombe) (CWF19L1), the gene for a novel protein (zgc:55718), the gene for a novel protein containing Kelch motifs and a BTB/POZ domain, the sycp3 gene for synaptonemal complex protein 3, a novel gene and a CpG island, complete sequence Length = 166208 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tagaggacaaatatgtttgtcaaa 62 |||||||||||||||| ||||||| Sbjct: 96713 tagaggacaaatatgtctgtcaaa 96690
>gb|AC183610.3| Pan troglodytes BAC clone CH251-223D9 from chromosome 9, complete sequence Length = 159456 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 45717 catgatttggaaacctttta 45736
>gb|AC146862.24| Medicago truncatula clone mth2-174p12, complete sequence Length = 114731 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcatccaagaataataaata 235 |||||||||||||||||||| Sbjct: 46503 gcatccaagaataataaata 46484
>emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chromosome 21, complete sequence Length = 158069 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 147163 catgatttggaaacctttta 147144
>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence Length = 121626 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gcatccaagaataataaata 235 |||||||||||||||||||| Sbjct: 2070 gcatccaagaataataaata 2089
>gb|AC135461.11| Medicago truncatula clone mth2-34f24, complete sequence Length = 132875 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aataataaataaatcatata 244 |||||||||||||||||||| Sbjct: 113436 aataataaataaatcatata 113455
>gb|AC137701.25| Medicago truncatula clone mth2-35h1, complete sequence Length = 151417 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aataataaataaatcatata 244 |||||||||||||||||||| Sbjct: 51074 aataataaataaatcatata 51055
>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence Length = 183917 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 80016 catgatttggaaacctttta 80035
>gb|AC098973.2| Homo sapiens chromosome 3 clone RP11-286D1, complete sequence Length = 216172 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 tccaagaataataaataaat 238 |||||||||||||||||||| Sbjct: 138387 tccaagaataataaataaat 138368
>emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chromosome 21, complete sequence Length = 278310 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 146092 catgatttggaaacctttta 146073
>gb|AC010209.14| Homo sapiens 12 BAC RP11-427C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191148 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 caagaataataaataaatcatata 244 |||||| ||||||||||||||||| Sbjct: 79833 caagaaaaataaataaatcatata 79810
>gb|AF250284.1|AF250284 Amsacta moorei entomopoxvirus, complete genome Length = 232392 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 aataaataaatcatataaca 247 |||||||||||||||||||| Sbjct: 90286 aataaataaatcatataaca 90305
>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete sequence Length = 219376 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 89027 catgatttggaaacctttta 89008
>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence Length = 148678 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 atgatttggaaaccttttagatcc 275 ||||||||| |||||||||||||| Sbjct: 5481 atgatttgggaaccttttagatcc 5458
>emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chromosome 9, complete sequence Length = 176845 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 catgatttggaaacctttta 270 |||||||||||||||||||| Sbjct: 134948 catgatttggaaacctttta 134929
>gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome 9, complete sequence Length = 190832 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aataataaataaatcatata 244 |||||||||||||||||||| Sbjct: 91229 aataataaataaatcatata 91248
>emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chromosome 4, complete sequence Length = 227165 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aataataaataaatcatata 244 |||||||||||||||||||| Sbjct: 152060 aataataaataaatcatata 152041
>gb|M86665.1|ADRVA Enteric mastadenovirus h40 penton protein gene, complete cds Length = 6351 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acatgatttggaaacctttt 269 |||||||||||||||||||| Sbjct: 4657 acatgatttggaaacctttt 4638
>emb|AL645687.13| Mouse DNA sequence from clone RP23-478H15 on chromosome 11, complete sequence Length = 156174 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aataataaataaatcatata 244 |||||||||||||||||||| Sbjct: 90006 aataataaataaatcatata 90025 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,660,870 Number of Sequences: 3902068 Number of extensions: 4660870 Number of successful extensions: 111810 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111660 Number of HSP's gapped (non-prelim): 150 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
