ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL683801.10| Mouse DNA sequence from clone DN-74E14 on chrom... 44 0.32
2emb|AL645637.18| Mouse DNA sequence from clone RP23-388B5 on chr... 44 0.32
3emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chr... 42 1.3
4gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.3
5ref|XM_640496.1| Dictyostelium discoideum development protein DG... 40 4.9
6gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 at... 40 4.9
7gb|AC124952.15| Medicago truncatula clone mth2-24m24, complete s... 40 4.9
8emb|AL121721.20|HS1096J16 Human DNA sequence from clone RP5-1096... 40 4.9
9gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643... 40 4.9
10gb|AF111942.1|AF111942 Dictyostelium discoideum AX4 development ... 40 4.9
11gb|AC122293.3| Mus musculus BAC clone RP23-257O9 from 10, comple... 40 4.9

>emb|AL683801.10| Mouse DNA sequence from clone DN-74E14 on chromosome 1 Contains the 5'
              end of the Adam23 gene for a disintegrin and
              metalloprotease domain 23 and a CpG island, complete
              sequence
          Length = 199536

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 302    gcatattcacattcacacgcac 323
              ||||||||||||||||||||||
Sbjct: 121120 gcatattcacattcacacgcac 121099



to top

>emb|AL645637.18| Mouse DNA sequence from clone RP23-388B5 on chromosome 1 Contains the 5'
              end of the Adam23 gene for a disintegrin and
              metalloprotease domain 23, a pleckstrin homology
              domain-containing family A (phosphoinositide binding
              specific) member 3 (Plekha3) pseudogene, a px19-like
              protein (PX19) pseudogene and a CpG island, complete
              sequence
          Length = 207629

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 302    gcatattcacattcacacgcac 323
              ||||||||||||||||||||||
Sbjct: 168209 gcatattcacattcacacgcac 168188



to top

>emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chromosome 4 Contains part
              of the Ptprd gene for receptor type protein tyrosine
              phosphatase D, complete sequence
          Length = 172513

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 39     accgaaaaggagcagcagtactaac 63
              |||||||||||||||||||| ||||
Sbjct: 111495 accgaaaaggagcagcagtattaac 111471



to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 276     tgcccggggatcggcatctcc 296
               |||||||||||||||||||||
Sbjct: 2691131 tgcccggggatcggcatctcc 2691111



to top

>ref|XM_640496.1| Dictyostelium discoideum development protein DG1106 (DDB0185081),
           partial mRNA
          Length = 3624

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 aatagtaatcatcatcaaca 234
           ||||||||||||||||||||
Sbjct: 931 aatagtaatcatcatcaaca 950



to top

>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic
             region, partial sequence
          Length = 161264

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   catcatcaacaccgcctacc 243
             ||||||||||||||||||||
Sbjct: 48957 catcatcaacaccgcctacc 48938



to top

>gb|AC124952.15| Medicago truncatula clone mth2-24m24, complete sequence
          Length = 134356

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    catattcacattcacacgca 322
              ||||||||||||||||||||
Sbjct: 130979 catattcacattcacacgca 130960



to top

>emb|AL121721.20|HS1096J16 Human DNA sequence from clone RP5-1096J16 on chromosome 20 Contains
             part of the C20orf26 gene, complete sequence
          Length = 55114

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    acagctttccacaacattggaaat 85
             |||||||||||||||| |||||||
Sbjct: 51795 acagctttccacaacaatggaaat 51772



to top

>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4,
              complete sequence
          Length = 256879

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    aatagtaatcatcatcaaca 234
              ||||||||||||||||||||
Sbjct: 167699 aatagtaatcatcatcaaca 167680



to top

>gb|AF111942.1|AF111942 Dictyostelium discoideum AX4 development protein DG1106 (DG1106)
           gene, partial cds
          Length = 3336

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 aatagtaatcatcatcaaca 234
           ||||||||||||||||||||
Sbjct: 174 aatagtaatcatcatcaaca 193



to top

>gb|AC122293.3| Mus musculus BAC clone RP23-257O9 from 10, complete sequence
          Length = 209942

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   cttgctttccagataagcaa 208
             ||||||||||||||||||||
Sbjct: 58505 cttgctttccagataagcaa 58524


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,659,057
Number of Sequences: 3902068
Number of extensions: 2659057
Number of successful extensions: 46910
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46874
Number of HSP's gapped (non-prelim): 36
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top