Clone Name | rbart59d04 |
---|---|
Clone Library Name | barley_pub |
>emb|AL683801.10| Mouse DNA sequence from clone DN-74E14 on chromosome 1 Contains the 5' end of the Adam23 gene for a disintegrin and metalloprotease domain 23 and a CpG island, complete sequence Length = 199536 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 302 gcatattcacattcacacgcac 323 |||||||||||||||||||||| Sbjct: 121120 gcatattcacattcacacgcac 121099
>emb|AL645637.18| Mouse DNA sequence from clone RP23-388B5 on chromosome 1 Contains the 5' end of the Adam23 gene for a disintegrin and metalloprotease domain 23, a pleckstrin homology domain-containing family A (phosphoinositide binding specific) member 3 (Plekha3) pseudogene, a px19-like protein (PX19) pseudogene and a CpG island, complete sequence Length = 207629 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 302 gcatattcacattcacacgcac 323 |||||||||||||||||||||| Sbjct: 168209 gcatattcacattcacacgcac 168188
>emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chromosome 4 Contains part of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 172513 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 39 accgaaaaggagcagcagtactaac 63 |||||||||||||||||||| |||| Sbjct: 111495 accgaaaaggagcagcagtattaac 111471
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 tgcccggggatcggcatctcc 296 ||||||||||||||||||||| Sbjct: 2691131 tgcccggggatcggcatctcc 2691111
>ref|XM_640496.1| Dictyostelium discoideum development protein DG1106 (DDB0185081), partial mRNA Length = 3624 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 aatagtaatcatcatcaaca 234 |||||||||||||||||||| Sbjct: 931 aatagtaatcatcatcaaca 950
>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic region, partial sequence Length = 161264 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 catcatcaacaccgcctacc 243 |||||||||||||||||||| Sbjct: 48957 catcatcaacaccgcctacc 48938
>gb|AC124952.15| Medicago truncatula clone mth2-24m24, complete sequence Length = 134356 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 catattcacattcacacgca 322 |||||||||||||||||||| Sbjct: 130979 catattcacattcacacgca 130960
>emb|AL121721.20|HS1096J16 Human DNA sequence from clone RP5-1096J16 on chromosome 20 Contains part of the C20orf26 gene, complete sequence Length = 55114 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 acagctttccacaacattggaaat 85 |||||||||||||||| ||||||| Sbjct: 51795 acagctttccacaacaatggaaat 51772
>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence Length = 256879 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aatagtaatcatcatcaaca 234 |||||||||||||||||||| Sbjct: 167699 aatagtaatcatcatcaaca 167680
>gb|AF111942.1|AF111942 Dictyostelium discoideum AX4 development protein DG1106 (DG1106) gene, partial cds Length = 3336 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 aatagtaatcatcatcaaca 234 |||||||||||||||||||| Sbjct: 174 aatagtaatcatcatcaaca 193
>gb|AC122293.3| Mus musculus BAC clone RP23-257O9 from 10, complete sequence Length = 209942 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 cttgctttccagataagcaa 208 |||||||||||||||||||| Sbjct: 58505 cttgctttccagataagcaa 58524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,659,057 Number of Sequences: 3902068 Number of extensions: 2659057 Number of successful extensions: 46910 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46874 Number of HSP's gapped (non-prelim): 36 length of query: 371 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 349 effective length of database: 17,147,199,772 effective search space: 5984372720428 effective search space used: 5984372720428 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)