>dbj|AP001496.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-835E18, complete
              sequence
          Length = 179358

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 365    ggcaggggcggcggctgcagctgctt 390
              |||||||| |||||||||||||||||
Sbjct: 157598 ggcaggggaggcggctgcagctgctt 157573

>ref|XM_529879.1| PREDICTED: Pan troglodytes LOC454922 (LOC454922), mRNA
          Length = 1285

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 371 ggcggcggctgcagctgcttc 391
           |||||||||||||||||||||
Sbjct: 31  ggcggcggctgcagctgcttc 51



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 308 ggcggcggctgcagctgcttc 328
           |||||||||||||||||||||
Sbjct: 31  ggcggcggctgcagctgcttc 51

>ref|XM_530407.1| PREDICTED: Pan troglodytes LOC458944 (LOC458944), mRNA
          Length = 584

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 305 cggggcggcggctgcagctgc 325
           |||||||||||||||||||||
Sbjct: 189 cggggcggcggctgcagctgc 209



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 ggggcggcggctgcagctgc 388
           ||||||||||||||||||||
Sbjct: 190 ggggcggcggctgcagctgc 209

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 359     ggcttcggcaggggcggcggc 379
               |||||||||||||||||||||
Sbjct: 2489342 ggcttcggcaggggcggcggc 2489322

>ref|NG_003100.1| Homo sapiens choline kinase-like, carnitine palmitoyltransferase 1B
           (muscle) transcription unit (CHKB-CPT1B) on chromosome
           22
          Length = 15105

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 305 cggggcggcggctgcagctgc 325
           |||||||||||||||||||||
Sbjct: 262 cggggcggcggctgcagctgc 242



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 ggggcggcggctgcagctgc 388
           ||||||||||||||||||||
Sbjct: 261 ggggcggcggctgcagctgc 242

>ref|NM_003955.3| Homo sapiens suppressor of cytokine signaling 3 (SOCS3), mRNA
          Length = 2746

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 371 ggcggcggctgcagctgcttc 391
           |||||||||||||||||||||
Sbjct: 388 ggcggcggctgcagctgcttc 368



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 308 ggcggcggctgcagctgcttc 328
           |||||||||||||||||||||
Sbjct: 388 ggcggcggctgcagctgcttc 368

>emb|CR689245.2|CNS0FURT Tetraodon nigroviridis full-length cDNA
          Length = 1562

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 305  cggggcggcggctgcagctgc 325
            |||||||||||||||||||||
Sbjct: 1189 cggggcggcggctgcagctgc 1169



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  ggggcggcggctgcagctgc 388
            ||||||||||||||||||||
Sbjct: 1188 ggggcggcggctgcagctgc 1169

>emb|CR684435.2|CNS0FR27 Tetraodon nigroviridis full-length cDNA
          Length = 1586

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 305  cggggcggcggctgcagctgc 325
            |||||||||||||||||||||
Sbjct: 1210 cggggcggcggctgcagctgc 1190



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  ggggcggcggctgcagctgc 388
            ||||||||||||||||||||
Sbjct: 1209 ggggcggcggctgcagctgc 1190

>gb|BC060858.1| Homo sapiens suppressor of cytokine signaling 3, mRNA (cDNA clone
           MGC:71791 IMAGE:30333577), complete cds
          Length = 2746

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 371 ggcggcggctgcagctgcttc 391
           |||||||||||||||||||||
Sbjct: 388 ggcggcggctgcagctgcttc 368



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 308 ggcggcggctgcagctgcttc 328
           |||||||||||||||||||||
Sbjct: 388 ggcggcggctgcagctgcttc 368

>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 295   ccgacggcctcggggcggcgg 315
             |||||||||||||||||||||
Sbjct: 48638 ccgacggcctcggggcggcgg 48618

>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 351   acgacgacggcttcggcaggggcggcggc 379
             ||||||||||||||||| | |||||||||
Sbjct: 22762 acgacgacggcttcggcggcggcggcggc 22790

>emb|CR456603.1| Homo sapiens Em:U62317.15 full length open reading frame (ORF) cDNA
           clone (cDNA clone C22ORF:pGEM.Em:U62317.15.V5)
          Length = 438

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 305 cggggcggcggctgcagctgc 325
           |||||||||||||||||||||
Sbjct: 179 cggggcggcggctgcagctgc 199



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 ggggcggcggctgcagctgc 388
           ||||||||||||||||||||
Sbjct: 180 ggggcggcggctgcagctgc 199

>gb|AC073359.12| Homo sapiens 3 BAC RP11-439C8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 178336

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    tgaagcatagactctcgtaga 31
             |||||||||||||||||||||
Sbjct: 18816 tgaagcatagactctcgtaga 18796

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 351      acgacgacggcttcggcaggggcggcggc 379
                ||||||||||||||||| | |||||||||
Sbjct: 20919539 acgacgacggcttcggcggcggcggcggc 20919567

>gb|AC061992.11| Homo sapiens chromosome 17, clone RP11-806H10, complete sequence
          Length = 100190

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 371   ggcggcggctgcagctgcttc 391
             |||||||||||||||||||||
Sbjct: 21363 ggcggcggctgcagctgcttc 21383



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   ggcggcggctgcagctgcttc 328
             |||||||||||||||||||||
Sbjct: 21363 ggcggcggctgcagctgcttc 21383

>gb|U62317.2|HUB384D8 Homo sapiens chromosome 22q13 BAC clone CIT987SK-384D8 complete
             sequence
          Length = 139934

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   cggggcggcggctgcagctgc 325
             |||||||||||||||||||||
Sbjct: 57250 cggggcggcggctgcagctgc 57230



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   ggggcggcggctgcagctgc 388
             ||||||||||||||||||||
Sbjct: 57249 ggggcggcggctgcagctgc 57230

>emb|AJ337625.1|HSA337625 Homo sapiens genomic sequence surrounding NotI site, clone
           NL4-CO19C
          Length = 702

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 371 ggcggcggctgcagctgcttc 391
           |||||||||||||||||||||
Sbjct: 43  ggcggcggctgcagctgcttc 23



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 308 ggcggcggctgcagctgcttc 328
           |||||||||||||||||||||
Sbjct: 43  ggcggcggctgcagctgcttc 23

>emb|AJ337019.1|HSA337019 Homo sapiens genomic sequence surrounding NotI site, clone
           NL4-BF20C
          Length = 873

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 371 ggcggcggctgcagctgcttc 391
           |||||||||||||||||||||
Sbjct: 43  ggcggcggctgcagctgcttc 23



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 308 ggcggcggctgcagctgcttc 328
           |||||||||||||||||||||
Sbjct: 43  ggcggcggctgcagctgcttc 23

>emb|AJ326027.1|HSA326027 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-BJ17R
          Length = 677

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 371 ggcggcggctgcagctgcttc 391
           |||||||||||||||||||||
Sbjct: 44  ggcggcggctgcagctgcttc 24



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 308 ggcggcggctgcagctgcttc 328
           |||||||||||||||||||||
Sbjct: 44  ggcggcggctgcagctgcttc 24

>dbj|AB004904.1| Homo sapiens mRNA for STAT induced STAT inhibitor-3, complete cds
          Length = 850

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 371 ggcggcggctgcagctgcttc 391
           |||||||||||||||||||||
Sbjct: 78  ggcggcggctgcagctgcttc 58



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 308 ggcggcggctgcagctgcttc 328
           |||||||||||||||||||||
Sbjct: 78  ggcggcggctgcagctgcttc 58

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 127     acggcttcagcaggggcgacggct 150
               ||||||||||||| ||||||||||
Sbjct: 3174311 acggcttcagcagcggcgacggct 3174288

>ref|NM_009122.1| Mus musculus special AT-rich sequence binding protein 1 (Satb1),
           mRNA
          Length = 2922

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 gggcggcggctgcagctgct 326
           ||||||||||||||||||||
Sbjct: 74  gggcggcggctgcagctgct 55



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 gggcggcggctgcagctgct 389
           ||||||||||||||||||||
Sbjct: 74  gggcggcggctgcagctgct 55

>ref|XM_913413.2| PREDICTED: Mus musculus hypothetical LOC637674 (LOC637674), mRNA
          Length = 681

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 gggcggcggctgcagctgct 389
           ||||||||||||||||||||
Sbjct: 608 gggcggcggctgcagctgct 627



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 gggcggcggctgcagctgct 326
           ||||||||||||||||||||
Sbjct: 608 gggcggcggctgcagctgct 627

>ref|XM_893730.2| PREDICTED: Mus musculus similar to shroom (LOC628919), mRNA
          Length = 2712

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 gggcggcggctgcagctgct 389
           ||||||||||||||||||||
Sbjct: 608 gggcggcggctgcagctgct 627



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 gggcggcggctgcagctgct 326
           ||||||||||||||||||||
Sbjct: 608 gggcggcggctgcagctgct 627

>ref|XM_534781.2| PREDICTED: Canis familiaris similar to Actin, aortic smooth muscle
           (Alpha-actin 2) (LOC477587), mRNA
          Length = 1293

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 ggcggctgcagctgcttcac 330
           ||||||||||||||||||||
Sbjct: 20  ggcggctgcagctgcttcac 1



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 ggcggctgcagctgcttcac 393
           ||||||||||||||||||||
Sbjct: 20  ggcggctgcagctgcttcac 1

>ref|XM_824214.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.4290)
            partial mRNA
          Length = 1707

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  tcgggggcgacggctgcagc 281
            ||||||||||||||||||||
Sbjct: 1334 tcgggggcgacggctgcagc 1315



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  tcgggggcgacggctgcagc 239
            ||||||||||||||||||||
Sbjct: 1334 tcgggggcgacggctgcagc 1315



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  tcgggggcgacggctgcagc 197
            ||||||||||||||||||||
Sbjct: 1334 tcgggggcgacggctgcagc 1315

>emb|AL354950.8| Human DNA sequence from clone RP11-234G16 on chromosome 10 Contains the
              EBF3 gene for early B-cell factor 3, a novel gene and two
              CpG islands, complete sequence
          Length = 166022

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 365    ggcaggggcggcggctgcagctgc 388
              ||||||||||||||||| ||||||
Sbjct: 130125 ggcaggggcggcggctggagctgc 130148

>emb|AL583925.1|MLEPRTN9 Mycobacterium leprae strain TN complete genome; segment 9/10
          Length = 308950

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    cggctgcagctgcttcacga 332
              ||||||||||||||||||||
Sbjct: 213905 cggctgcagctgcttcacga 213886

>gb|AC154796.2| Mus musculus BAC clone RP24-490B17 from chromosome 17, complete
             sequence
          Length = 161075

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   gggcggcggctgcagctgct 326
             ||||||||||||||||||||
Sbjct: 75850 gggcggcggctgcagctgct 75831



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   gggcggcggctgcagctgct 389
             ||||||||||||||||||||
Sbjct: 75850 gggcggcggctgcagctgct 75831

>dbj|AK134040.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830417N23 product:special AT-rich
           sequence binding protein 1, full insert sequence
          Length = 2964

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 gggcggcggctgcagctgct 326
           ||||||||||||||||||||
Sbjct: 68  gggcggcggctgcagctgct 49



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 gggcggcggctgcagctgct 389
           ||||||||||||||||||||
Sbjct: 68  gggcggcggctgcagctgct 49

>dbj|AK088563.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430020F12
           product:special AT-rich sequence binding protein 1, full
           insert sequence
          Length = 2962

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 gggcggcggctgcagctgct 326
           ||||||||||||||||||||
Sbjct: 64  gggcggcggctgcagctgct 45



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 gggcggcggctgcagctgct 389
           ||||||||||||||||||||
Sbjct: 64  gggcggcggctgcagctgct 45

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 314     ggctgcagctgcttcacgag 333
               ||||||||||||||||||||
Sbjct: 3610948 ggctgcagctgcttcacgag 3610967

>dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0085K21
          Length = 180714

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   ggctgcagctgcttcacgag 333
             ||||||||||||||||||||
Sbjct: 92238 ggctgcagctgcttcacgag 92257

>gb|U05252.1|MMU05252 Mus musculus nuclear matrix attachment DNA-binding protein SATB1
           mRNA, complete cds
          Length = 2922

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 gggcggcggctgcagctgct 326
           ||||||||||||||||||||
Sbjct: 74  gggcggcggctgcagctgct 55



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 gggcggcggctgcagctgct 389
           ||||||||||||||||||||
Sbjct: 74  gggcggcggctgcagctgct 55

>gb|U00018.1|U00018 Mycobacterium leprae cosmid B2168
          Length = 42991

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   cggctgcagctgcttcacga 332
             ||||||||||||||||||||
Sbjct: 25490 cggctgcagctgcttcacga 25471


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,235,744
Number of Sequences: 3902068
Number of extensions: 3235744
Number of successful extensions: 78981
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78588
Number of HSP's gapped (non-prelim): 393
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)