ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX324186.12| Zebrafish DNA sequence from clone DKEY-18B8 in ... 40 3.4
2gb|AC025772.6| Homo sapiens chromosome 5 clone CTD-2229C24, comp... 40 3.4
3gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, compl... 40 3.4
4emb|BX548028.5| Zebrafish DNA sequence from clone CH211-260H24 i... 40 3.4
5gb|AC154377.4| Mus musculus BAC clone RP23-63F23 from chromosome... 40 3.4

>emb|BX324186.12| Zebrafish DNA sequence from clone DKEY-18B8 in linkage group 17,
             complete sequence
          Length = 153540

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    acatcacagtacacagaact 39
             ||||||||||||||||||||
Sbjct: 38326 acatcacagtacacagaact 38307



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>gb|AC025772.6| Homo sapiens chromosome 5 clone CTD-2229C24, complete sequence
          Length = 31085

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 165   aagaaacacaatatacaatggagc 188
             ||||||||||| ||||||||||||
Sbjct: 24141 aagaaacacaacatacaatggagc 24118



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>gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, complete sequence
          Length = 187298

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    ttactttttcttttgcaggc 241
              ||||||||||||||||||||
Sbjct: 160310 ttactttttcttttgcaggc 160291



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>emb|BX548028.5| Zebrafish DNA sequence from clone CH211-260H24 in linkage group 12,
              complete sequence
          Length = 157392

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    gcttactttttcttttgcag 239
              ||||||||||||||||||||
Sbjct: 122447 gcttactttttcttttgcag 122428



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>gb|AC154377.4| Mus musculus BAC clone RP23-63F23 from chromosome 14, complete sequence
          Length = 193561

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    catcacagtacacagaactacaca 44
             |||||||||||||| |||||||||
Sbjct: 14483 catcacagtacacacaactacaca 14506


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,327,794
Number of Sequences: 3902068
Number of extensions: 2327794
Number of successful extensions: 40993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40987
Number of HSP's gapped (non-prelim): 6
length of query: 261
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 239
effective length of database: 17,147,199,772
effective search space: 4098180745508
effective search space used: 4098180745508
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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