Clone Name | rbart59c09 |
---|---|
Clone Library Name | barley_pub |
>emb|CR555295.8| Zebrafish DNA sequence from clone DKEY-45D22 in linkage group 11, complete sequence Length = 147157 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 aaagcagcaaacaaaacaaag 49 ||||||||||||||||||||| Sbjct: 15116 aaagcagcaaacaaaacaaag 15136
>gb|AC122025.3| Mus musculus BAC clone RP24-388G8 from 12, complete sequence Length = 202612 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aaagcagcaaacaaaacaaa 48 |||||||||||||||||||| Sbjct: 85403 aaagcagcaaacaaaacaaa 85422
>emb|AL365335.11| Human DNA sequence from clone RP11-278E14 on chromosome 6, complete sequence Length = 160889 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 caaatcacctaagcagaaag 120 |||||||||||||||||||| Sbjct: 65939 caaatcacctaagcagaaag 65920
>emb|AL035685.21|HS791K14 Human DNA sequence from clone RP4-791K14 on chromosome 20q13.11-13.13 Contains the KCNB1 gene for Shab-related potassium voltage-gated channel 1 and a CpG island, complete sequence Length = 155318 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 agcagcaaacaaaacaaagc 50 |||||||||||||||||||| Sbjct: 118931 agcagcaaacaaaacaaagc 118912
>emb|AL590503.11| Mouse DNA sequence from clone RP23-128M23 on chromosome 13, complete sequence Length = 169547 Score = 40.1 bits (20), Expect = 2.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 121 taaatagtaactcaagctgaaagtacca 148 |||||||| || |||||||||||||||| Sbjct: 152172 taaatagttacacaagctgaaagtacca 152145
>gb|AC106030.5| Homo sapiens chromosome 17, clone CTD-3070M1, complete sequence Length = 111120 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 agcaaacaaaacaaagcctt 53 |||||||||||||||||||| Sbjct: 21862 agcaaacaaaacaaagcctt 21881
>gb|AC126696.1| Homo sapiens chromosome 16 clone RP4-536B24, complete sequence Length = 108708 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 agcagcaaacaaaacaaagc 50 |||||||||||||||||||| Sbjct: 23435 agcagcaaacaaaacaaagc 23454
>gb|AC091521.19| Mus musculus chromosome 1 clone rp23-145f9, complete sequence Length = 198784 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 agcaaacaaaacaaagcctt 53 |||||||||||||||||||| Sbjct: 71990 agcaaacaaaacaaagcctt 72009
>gb|AC022903.12| Homo sapiens chromosome 17, clone RP11-642M2, complete sequence Length = 191818 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcagcaaacaaaacaaagcc 51 |||||||||||||||||||| Sbjct: 119191 gcagcaaacaaaacaaagcc 119210
>gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome 12, complete sequence Length = 200974 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aaagcagcaaacaaaacaaa 48 |||||||||||||||||||| Sbjct: 159022 aaagcagcaaacaaaacaaa 159041
>dbj|AK048499.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130066I17 product:menage a trois 1, full insert sequence Length = 2633 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aaagcagcaaacaaaacaaa 48 |||||||||||||||||||| Sbjct: 681 aaagcagcaaacaaaacaaa 700
>gb|AC020580.11|AC020580 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete sequence Length = 94704 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 caaacaaaacaaagccttgg 55 |||||||||||||||||||| Sbjct: 67060 caaacaaaacaaagccttgg 67079
>gb|AC004100.1|AC004100 Homo sapiens chromosome 17, clone hCIT.163_O_5, complete sequence Length = 95604 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gcagcaaacaaaacaaagcc 51 |||||||||||||||||||| Sbjct: 84463 gcagcaaacaaaacaaagcc 84444
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 gaaacaggtccccttccat 77 ||||||||||||||||||| Sbjct: 2154844 gaaacaggtccccttccat 2154862
>gb|AC137902.10| Mus musculus chromosome 15, clone RP23-372O9, complete sequence Length = 196712 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 96 atcaacaaatcacctaagcagaa 118 |||||||||| |||||||||||| Sbjct: 34885 atcaacaaattacctaagcagaa 34863
>gb|AC079216.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-353E8, complete sequence Length = 221748 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 28 gaaagcagcaaacaaaacaaagc 50 |||||| |||||||||||||||| Sbjct: 218543 gaaagctgcaaacaaaacaaagc 218565
>gb|AC044804.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-15K8, complete sequence Length = 253000 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 caacaaatcacctaagcag 116 ||||||||||||||||||| Sbjct: 129240 caacaaatcacctaagcag 129258
>gb|AC161056.5| Mus musculus BAC clone RP23-241J7 from chromosome 3, complete sequence Length = 226878 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 agcaaacaaaacaaagcct 52 ||||||||||||||||||| Sbjct: 97027 agcaaacaaaacaaagcct 97045
>emb|AL929319.4| Zebrafish DNA sequence from clone CH211-59F17 in linkage group 10, complete sequence Length = 194614 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 agcagcaaacaaaacaaag 49 ||||||||||||||||||| Sbjct: 23845 agcagcaaacaaaacaaag 23863
>gb|AC129215.3| Mus musculus BAC clone RP24-435H23 from chromosome 5, complete sequence Length = 140936 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 142 agtaccaggcatacaatgc 160 ||||||||||||||||||| Sbjct: 102404 agtaccaggcatacaatgc 102386
>gb|AC092031.4| Homo sapiens BAC clone RP11-660M7 from 7, complete sequence Length = 99374 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 27 tgaaagcagcaaacaaaacaaag 49 |||||||| |||||||||||||| Sbjct: 43700 tgaaagcaacaaacaaaacaaag 43678
>emb|AL603749.6| Human DNA sequence from clone RP11-133N1 on chromosome 1 Contains two novel proteins similar to preferentially expressed antigen in melanoma (PRAME) and the 3' end of a novel leucine rich repeat domain containing protein, complete sequence Length = 102313 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 31 agcagcaaacaaaacaaagcctt 53 ||||| ||||||||||||||||| Sbjct: 94140 agcaggaaacaaaacaaagcctt 94162
>emb|AL445223.6| Human DNA sequence from clone RP11-573N10 on chromosome 13 Contains the 3' end of one variant of the FARP1 gene for (chondrocyte-derived) FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1, complete sequence Length = 85329 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 aaagtaaatagtaactcaa 135 ||||||||||||||||||| Sbjct: 68109 aaagtaaatagtaactcaa 68127
>gb|AF513500.1| Mycobacterium abscessus strain 390R R/S-D1 region and ISMab1 insertion sequence, complete sequence Length = 25224 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 cgggcagtggattgaaagc 33 ||||||||||||||||||| Sbjct: 13454 cgggcagtggattgaaagc 13472
>emb|AL030996.1|HS1189B24 Human DNA sequence from clone RP5-1189B24 on chromosome Xq25-26.3 Contains the 3' end of the THOC2 gene for THO complex 2, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene, a tubulin beta 4 (TUBB4) pseudogene and a fer (fps/fes related) tyrosine kinase (phosphoprotein NCP94) (FER) pseudogene, complete sequence Length = 114784 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 gcagaaagtaaatagtaac 131 ||||||||||||||||||| Sbjct: 40653 gcagaaagtaaatagtaac 40635
>emb|AL732562.8| Zebrafish DNA sequence from clone CH211-103D22 in linkage group 10 Contains the 3' part of the cxadr gene (coxsackie virus and adenovirus receptor), a novel gene similar to AUTS2 (autism-related protein 1) and four CpG islands, complete sequence Length = 187365 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 agcagcaaacaaaacaaag 49 ||||||||||||||||||| Sbjct: 62815 agcagcaaacaaaacaaag 62833
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 gccttggtgcgaaacaggt 67 ||||||||||||||||||| Sbjct: 4170183 gccttggtgcgaaacaggt 4170165
>gb|AC087115.10| Mus Musculus Strain C57Bl6/J Chromosome 8 RP23-93A22, complete sequence Length = 181849 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 gcagcaaacaaaacaaagccttg 54 |||||||| |||||||||||||| Sbjct: 100785 gcagcaaagaaaacaaagccttg 100807
>emb|BX511224.8| Zebrafish DNA sequence from clone CH211-113D14 in linkage group 2, complete sequence Length = 186709 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 aaagtaaatagtaactcaa 135 ||||||||||||||||||| Sbjct: 43874 aaagtaaatagtaactcaa 43892
>gb|AC159299.2| Mus musculus BAC clone RP23-241K11 from chromosome 6, complete sequence Length = 207837 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 caacaaatcacctaagcag 116 ||||||||||||||||||| Sbjct: 92113 caacaaatcacctaagcag 92131
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 aaagcagcaaacaaaacaa 47 ||||||||||||||||||| Sbjct: 20221134 aaagcagcaaacaaaacaa 20221116
>gb|AC146065.4| Pan troglodytes BAC clone clone RP43-60D22 from 7, complete sequence Length = 172757 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 27 tgaaagcagcaaacaaaacaaag 49 |||||||| |||||||||||||| Sbjct: 64178 tgaaagcaacaaacaaaacaaag 64200
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 aaagcagcaaacaaaacaa 47 ||||||||||||||||||| Sbjct: 261 aaagcagcaaacaaaacaa 243
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18 Length = 169128 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 aaagcagcaaacaaaacaa 47 ||||||||||||||||||| Sbjct: 114634 aaagcagcaaacaaaacaa 114616
>dbj|AK072623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131H02, full insert sequence Length = 1073 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 aaagcagcaaacaaaacaa 47 ||||||||||||||||||| Sbjct: 1024 aaagcagcaaacaaaacaa 1006
>gb|AC102422.10| Mus musculus chromosome 18, clone RP24-572G3, complete sequence Length = 173218 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 agcagcaaacaaaacaaag 49 ||||||||||||||||||| Sbjct: 18262 agcagcaaacaaaacaaag 18280
>gb|AC123878.4| Mus musculus BAC clone RP23-318I20 from 3, complete sequence Length = 215121 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 agcaaacaaaacaaagcct 52 ||||||||||||||||||| Sbjct: 110033 agcaaacaaaacaaagcct 110015
>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence Length = 173574 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 gaaagcagcaaacaaaacaaagc 50 |||||| |||||||||||||||| Sbjct: 99075 gaaagctgcaaacaaaacaaagc 99053
>gb|AC155316.6| Mus musculus BAC clone RP23-181P9 from chromosome 5, complete sequence Length = 204809 Score = 38.2 bits (19), Expect = 8.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 142 agtaccaggcatacaatgc 160 ||||||||||||||||||| Sbjct: 59441 agtaccaggcatacaatgc 59423
>emb|AL590996.12| Mouse DNA sequence from clone RP23-328K2 on chromosome 11, complete sequence Length = 139242 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 ttgaaagcagcaaacaaaacaaa 48 |||||||||| |||||||||||| Sbjct: 97336 ttgaaagcagaaaacaaaacaaa 97358
>emb|AL732623.7| Mouse DNA sequence from clone RP23-276F7 on chromosome 4, complete sequence Length = 82990 Score = 38.2 bits (19), Expect = 8.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 tcatcaacaaatcacctaagcag 116 |||| |||||||||||||||||| Sbjct: 4287 tcatgaacaaatcacctaagcag 4309 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,305,548 Number of Sequences: 3902068 Number of extensions: 2305548 Number of successful extensions: 179778 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 179610 Number of HSP's gapped (non-prelim): 168 length of query: 165 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 143 effective length of database: 17,147,199,772 effective search space: 2452049567396 effective search space used: 2452049567396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)