ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465806.1| Oryza sativa (japonica cultivar-group), mRNA 190 2e-45
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 190 2e-45
3dbj|AP004086.3| Oryza sativa (japonica cultivar-group) genomic D... 190 2e-45
4dbj|AK059542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 2e-45
5gb|AY107325.1| Zea mays PCO061228 mRNA sequence 186 4e-44
6gb|BT016608.1| Zea mays clone Contig441 mRNA sequence 178 9e-42
7ref|XM_464010.1| Oryza sativa (japonica cultivar-group), mRNA 161 2e-36
8dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
9gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
12emb|AJ851451.1| Gallus gallus mRNA for hypothetical protein, clo... 42 1.3
13ref|NM_001012700.1| Gallus gallus La ribonucleoprotein domain fa... 42 1.3
14emb|BX932319.1| Gallus gallus finished cDNA, clone ChEST356c5 42 1.3
15gb|AY008651.1| Sophronitis kautskyi isolate C286 internal transc... 42 1.3
16gb|AF260199.1| Sophronitis harpophylla internal transcribed spac... 42 1.3
17ref|NM_100288.2| Arabidopsis thaliana TOM22-I AT1G04070 (TOM22-I... 40 5.2
18gb|AY365046.1| Pan troglodytes BRCA1 (BRCA1) gene, complete cds 40 5.2
19ref|XM_481727.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
20gb|L78833.1| Homo sapiens BRCA1 (BRCA1) gene, complete cds; ribo... 40 5.2
21ref|XM_471773.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
22gb|BT025570.1| Arabidopsis thaliana At1g04070 mRNA, complete cds 40 5.2
23gb|DQ478408.1| Homo sapiens neighbor of BRCA1 gene 1 (NBR1) gene... 40 5.2
24gb|DQ190457.1| Homo sapiens clone mck41_A neighbor of BRCA1 gene... 40 5.2
25gb|DQ190456.1| Homo sapiens clone mck578_U neighbor of BRCA1 gen... 40 5.2
26gb|DQ190455.1| Homo sapiens clone mck554_A neighbor of BRCA1 gen... 40 5.2
27gb|DQ190454.1| Homo sapiens clone mck43_A neighbor of BRCA1 gene... 40 5.2
28gb|DQ190453.1| Homo sapiens clone mck55_A neighbor of BRCA1 gene... 40 5.2
29gb|DQ190452.1| Homo sapiens clone mck94_A neighbor of BRCA1 gene... 40 5.2
30gb|DQ190451.1| Homo sapiens clone mck47_A neighbor of BRCA1 gene... 40 5.2
31gb|DQ190450.1| Homo sapiens clone mck432_A neighbor of BRCA1 gen... 40 5.2
32ref|XM_755061.1| Ustilago maydis 521 hypothetical protein (UM040... 40 5.2
33gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome ... 40 5.2
34gb|AC124173.2| Mus musculus BAC clone RP23-173I4 from 13, comple... 40 5.2
35gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.2
36emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.2
37emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromosome 4,... 40 5.2
38emb|AL672114.1|MLO672114 Mesorhizobium loti R7A symbiosis island... 40 5.2
39gb|AF533655.1| Geobacillus stearothermophilus aminopeptidase-lik... 40 5.2
40gb|AY124010.1| Homo sapiens interleukin 1 receptor, type II (IL1... 40 5.2
41gb|AC097534.3| Homo sapiens BAC clone RP11-798M19 from 4, comple... 40 5.2
42gb|AE002160.2| Chlamydia muridarum Nigg, complete genome 40 5.2
43gb|AC161887.5| Mus musculus 6 BAC RP23-75P5 (Roswell Park Cancer... 40 5.2
44gb|DQ361836.1| Shigella boydii strain G1226 GalK (galK) gene, co... 40 5.2
45gb|AY273801.1| Homo sapiens breast cancer 1, early onset (BRCA1)... 40 5.2
46dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
47dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
48dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
49emb|BX818699.1|CNS0AEFA Arabidopsis thaliana Full-length cDNA Co... 40 5.2
50emb|BX818651.1|CNS0ACO6 Arabidopsis thaliana Full-length cDNA Co... 40 5.2
51emb|BX818437.1|CNS0ACQ7 Arabidopsis thaliana Full-length cDNA Co... 40 5.2
52gb|AC007165.4| Homo sapiens BAC clone RP11-451C2 from 2, complet... 40 5.2
53gb|AC023108.4| Homo sapiens BAC clone RP11-121I13 from 2, comple... 40 5.2
54gb|AY086260.1| Arabidopsis thaliana clone 23106 mRNA, complete s... 40 5.2
55gb|AC135721.4| Homo sapiens, clone CTD-3199J23, complete sequence 40 5.2
56dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.2
57dbj|AK175541.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 40 5.2
58gb|AC158685.4| Mus musculus 6 BAC RP23-284D11 (Roswell Park Canc... 40 5.2
59dbj|AP004706.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
60dbj|AP004621.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
61dbj|AK121305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
62emb|AJ333270.1|HSA333270 Homo sapiens genomic sequence surroundi... 40 5.2
63dbj|AK071948.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
64gb|AC134787.6| Mus musculus chromosome 1, clone RP24-477E13, com... 40 5.2
65emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on ch... 40 5.2
66gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence 40 5.2
67emb|AL929199.11| Mouse DNA sequence from clone RP23-458A10 on ch... 40 5.2
68gb|AC002411.1|F20D22 Arabidopsis thaliana chromosome 1 BAC F20D2... 40 5.2
69gb|U48401.1|RNU48401 Rattus norvegicus TGF-beta type I receptor ... 40 5.2
70dbj|AB215778.1| Equus caballus DNA, microsatellite TKY1835 40 5.2
71emb|AL627211.13| Mouse DNA sequence from clone RP23-104G20 on ch... 40 5.2
72gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
73gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
74gb|M30948.1|GORRGIT Gorilla rRNA gene internal transcribed space... 40 5.2
75gb|AC003027.1| Arabidopsis thaliana chromosome I BAC F21M11 geno... 40 5.2 
>ref|XM_465806.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 589

 Score =  190 bits (96), Expect = 2e-45
 Identities = 150/168 (89%)
 Strand = Plus / Minus

                                                                       
Query: 220 gcctgctgctggaggtcgaggtcgaccatctgctgctcgcggtccatctcgatgatgagc 279
           |||||||||||||| |||||||||   | |||||||||||||||||||||||||||||||
Sbjct: 286 gcctgctgctggagctcgaggtcgttgagctgctgctcgcggtccatctcgatgatgagc 227

                                                                       
Query: 280 ggcacgacgagcaccaggaaggtggtccccgcgatccacgccgccttccccgtactccgc 339
           || |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 226 gggacgacgaggacgaggaaggtggtccccgcgatccaggccgccttccccgtgctccgc 167

                                                           
Query: 340 agcagcttccccgccaccgccgcggcctcgcggccgtgcgccgccacc 387
           |||||||||  |||||  | ||| |||||||| || ||||||||||||
Sbjct: 166 agcagcttcttcgccatggtcgccgcctcgcgcccatgcgccgccacc 119
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  190 bits (96), Expect = 2e-45
 Identities = 150/168 (89%)
 Strand = Plus / Minus

                                                                            
Query: 220      gcctgctgctggaggtcgaggtcgaccatctgctgctcgcggtccatctcgatgatgagc 279
                |||||||||||||| |||||||||   | |||||||||||||||||||||||||||||||
Sbjct: 17564094 gcctgctgctggagctcgaggtcgttgagctgctgctcgcggtccatctcgatgatgagc 17564035

                                                                            
Query: 280      ggcacgacgagcaccaggaaggtggtccccgcgatccacgccgccttccccgtactccgc 339
                || |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 17564034 gggacgacgaggacgaggaaggtggtccccgcgatccaggccgccttccccgtgctccgc 17563975

                                                                
Query: 340      agcagcttccccgccaccgccgcggcctcgcggccgtgcgccgccacc 387
                |||||||||  |||||  | ||| |||||||| || ||||||||||||
Sbjct: 17563974 agcagcttcttcgccatggtcgccgcctcgcgcccatgcgccgccacc 17563927



 Score =  161 bits (81), Expect = 2e-36
 Identities = 111/121 (91%)
 Strand = Plus / Minus

                                                                           
Query: 220     gcctgctgctggaggtcgaggtcgaccatctgctgctcgcggtccatctcgatgatgagc 279
               |||||||||||||| || ||||||   | |||||||||||| ||||||||||||||||||
Sbjct: 1651044 gcctgctgctggagctcaaggtcgttgagctgctgctcgcgatccatctcgatgatgagc 1650985

                                                                           
Query: 280     ggcacgacgagcaccaggaaggtggtccccgcgatccacgccgccttccccgtactccgc 339
               || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1650984 gggacgacgaggaccaggaaggtggtccccgcgatccacgccgccttccccgtgctccgc 1650925

                
Query: 340     a 340
               |
Sbjct: 1650924 a 1650924
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>dbj|AP004086.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1288_D09
          Length = 124026

 Score =  190 bits (96), Expect = 2e-45
 Identities = 150/168 (89%)
 Strand = Plus / Minus

                                                                         
Query: 220   gcctgctgctggaggtcgaggtcgaccatctgctgctcgcggtccatctcgatgatgagc 279
             |||||||||||||| |||||||||   | |||||||||||||||||||||||||||||||
Sbjct: 34012 gcctgctgctggagctcgaggtcgttgagctgctgctcgcggtccatctcgatgatgagc 33953

                                                                         
Query: 280   ggcacgacgagcaccaggaaggtggtccccgcgatccacgccgccttccccgtactccgc 339
             || |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 33952 gggacgacgaggacgaggaaggtggtccccgcgatccaggccgccttccccgtgctccgc 33893

                                                             
Query: 340   agcagcttccccgccaccgccgcggcctcgcggccgtgcgccgccacc 387
             |||||||||  |||||  | ||| |||||||| || ||||||||||||
Sbjct: 33892 agcagcttcttcgccatggtcgccgcctcgcgcccatgcgccgccacc 33845
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>dbj|AK059542.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E12, full
           insert sequence
          Length = 589

 Score =  190 bits (96), Expect = 2e-45
 Identities = 150/168 (89%)
 Strand = Plus / Minus

                                                                       
Query: 220 gcctgctgctggaggtcgaggtcgaccatctgctgctcgcggtccatctcgatgatgagc 279
           |||||||||||||| |||||||||   | |||||||||||||||||||||||||||||||
Sbjct: 286 gcctgctgctggagctcgaggtcgttgagctgctgctcgcggtccatctcgatgatgagc 227

                                                                       
Query: 280 ggcacgacgagcaccaggaaggtggtccccgcgatccacgccgccttccccgtactccgc 339
           || |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 226 gggacgacgaggacgaggaaggtggtccccgcgatccaggccgccttccccgtgctccgc 167

                                                           
Query: 340 agcagcttccccgccaccgccgcggcctcgcggccgtgcgccgccacc 387
           |||||||||  |||||  | ||| |||||||| || ||||||||||||
Sbjct: 166 agcagcttcttcgccatggtcgccgcctcgcgcccatgcgccgccacc 119
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>gb|AY107325.1| Zea mays PCO061228 mRNA sequence
          Length = 844

 Score =  186 bits (94), Expect = 4e-44
 Identities = 148/166 (89%)
 Strand = Plus / Minus

                                                                       
Query: 222 ctgctgctggaggtcgaggtcgaccatctgctgctcgcggtccatctcgatgatgagcgg 281
           ||||||||| || |||||||||   | ||||||||| ||||||||||||||||| |||||
Sbjct: 334 ctgctgctgcagctcgaggtcgttgagctgctgctcccggtccatctcgatgatcagcgg 275

                                                                       
Query: 282 cacgacgagcaccaggaaggtggtccccgcgatccacgccgccttccccgtactccgcag 341
           ||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 274 caccaccagcaccaggaaggttgtccccgcgatccacgccgccttccccgtgctccgcag 215

                                                         
Query: 342 cagcttccccgccaccgccgcggcctcgcggccgtgcgccgccacc 387
           |||||||  |||||| ||||| ||||| || |||||||||||||||
Sbjct: 214 cagcttcttcgccacggccgccgcctctcgcccgtgcgccgccacc 169
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>gb|BT016608.1| Zea mays clone Contig441 mRNA sequence
          Length = 729

 Score =  178 bits (90), Expect = 9e-42
 Identities = 147/166 (88%)
 Strand = Plus / Minus

                                                                       
Query: 222 ctgctgctggaggtcgaggtcgaccatctgctgctcgcggtccatctcgatgatgagcgg 281
           ||||||||| || |||||||||   | ||||||||| ||||||||||||||||| |||||
Sbjct: 248 ctgctgctgcagctcgaggtcgttgagctgctgctcccggtccatctcgatgatcagcgg 189

                                                                       
Query: 282 cacgacgagcaccaggaaggtggtccccgcgatccacgccgccttccccgtactccgcag 341
           | | || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 188 ccccaccagcaccaggaaggttgtccccgcgatccacgccgccttccccgtgctccgcag 129

                                                         
Query: 342 cagcttccccgccaccgccgcggcctcgcggccgtgcgccgccacc 387
           |||||||  |||||| ||||| ||||| || |||||||||||||||
Sbjct: 128 cagcttcttcgccacggccgccgcctctcgcccgtgcgccgccacc 83
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>ref|XM_464010.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 258

 Score =  161 bits (81), Expect = 2e-36
 Identities = 111/121 (91%)
 Strand = Plus / Minus

                                                                       
Query: 220 gcctgctgctggaggtcgaggtcgaccatctgctgctcgcggtccatctcgatgatgagc 279
           |||||||||||||| || ||||||   | |||||||||||| ||||||||||||||||||
Sbjct: 230 gcctgctgctggagctcaaggtcgttgagctgctgctcgcgatccatctcgatgatgagc 171

                                                                       
Query: 280 ggcacgacgagcaccaggaaggtggtccccgcgatccacgccgccttccccgtactccgc 339
           || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 170 gggacgacgaggaccaggaaggtggtccccgcgatccacgccgccttccccgtgctccgc 111

            
Query: 340 a 340
           |
Sbjct: 110 a 110
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>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1007_D04
          Length = 125503

 Score =  161 bits (81), Expect = 2e-36
 Identities = 111/121 (91%)
 Strand = Plus / Minus

                                                                         
Query: 220   gcctgctgctggaggtcgaggtcgaccatctgctgctcgcggtccatctcgatgatgagc 279
             |||||||||||||| || ||||||   | |||||||||||| ||||||||||||||||||
Sbjct: 88147 gcctgctgctggagctcaaggtcgttgagctgctgctcgcgatccatctcgatgatgagc 88088

                                                                         
Query: 280   ggcacgacgagcaccaggaaggtggtccccgcgatccacgccgccttccccgtactccgc 339
             || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 88087 gggacgacgaggaccaggaaggtggtccccgcgatccacgccgccttccccgtgctccgc 88028

              
Query: 340   a 340
             |
Sbjct: 88027 a 88027
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>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0023E20,
              complete sequence
          Length = 130827

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 315    ccacgccgccttccccgtactccgcagcagcttccccgccaccg 358
              ||||||||||||||||||  ||||||||  ||||||||||||||
Sbjct: 109459 ccacgccgccttccccgtgatccgcagcgccttccccgccaccg 109502
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                           
Query: 315     ccacgccgccttccccgtactccgcagcagcttccccgccaccg 358
               ||||||||||||||||||  ||||||||  ||||||||||||||
Sbjct: 7253710 ccacgccgccttccccgtgatccgcagcgccttccccgccaccg 7253667
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                           
Query: 315     ccacgccgccttccccgtactccgcagcagcttccccgccaccg 358
               ||||||||||||||||||  ||||||||  ||||||||||||||
Sbjct: 7323796 ccacgccgccttccccgtgatccgcagcgccttccccgccaccg 7323753
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>emb|AJ851451.1| Gallus gallus mRNA for hypothetical protein, clone 3f2
          Length = 6891

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 307 cccgcgatccacgccgccttccccg 331
           |||||||||||||||||| ||||||
Sbjct: 109 cccgcgatccacgccgccctccccg 85
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>ref|NM_001012700.1| Gallus gallus La ribonucleoprotein domain family, member 4 (LARP4),
           mRNA
          Length = 6891

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 307 cccgcgatccacgccgccttccccg 331
           |||||||||||||||||| ||||||
Sbjct: 109 cccgcgatccacgccgccctccccg 85
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>emb|BX932319.1| Gallus gallus finished cDNA, clone ChEST356c5
          Length = 770

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 307 cccgcgatccacgccgccttccccg 331
           |||||||||||||||||| ||||||
Sbjct: 65  cccgcgatccacgccgccctccccg 41
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>gb|AY008651.1| Sophronitis kautskyi isolate C286 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 635

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  aaggcatgatctttctctccg 89
           |||||||||||||||||||||
Sbjct: 587 aaggcatgatctttctctccg 567
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>gb|AF260199.1| Sophronitis harpophylla internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 635

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  aaggcatgatctttctctccg 89
           |||||||||||||||||||||
Sbjct: 587 aaggcatgatctttctctccg 567
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>ref|NM_100288.2| Arabidopsis thaliana TOM22-I AT1G04070 (TOM22-I) mRNA, complete cds
          Length = 634

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 gcgatccacgccgccttccc 329
           ||||||||||||||||||||
Sbjct: 228 gcgatccacgccgccttccc 209
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>gb|AY365046.1| Pan troglodytes BRCA1 (BRCA1) gene, complete cds
          Length = 80966

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   caggcaaaatgaaatgtgaa 159
             ||||||||||||||||||||
Sbjct: 64229 caggcaaaatgaaatgtgaa 64248
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>ref|XM_481727.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  cgcggccgtgcgccgccacc 387
            ||||||||||||||||||||
Sbjct: 1107 cgcggccgtgcgccgccacc 1088
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>gb|L78833.1| Homo sapiens BRCA1 (BRCA1) gene, complete cds; ribosomal protein
             L21-like protein (rpL21) pseudogene, complete sequence;
             Rho7 (Rho7) and VatI (VatI) genes, complete cds; and
             unknown (ifp35) gene, exons 1 through 3 and partial cds
          Length = 117143

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   caggcaaaatgaaatgtgaa 159
             ||||||||||||||||||||
Sbjct: 66817 caggcaaaatgaaatgtgaa 66836
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>ref|XM_471773.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1146

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 gtcgaccatctgctgctcgc 259
           ||||||||||||||||||||
Sbjct: 597 gtcgaccatctgctgctcgc 578
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>gb|BT025570.1| Arabidopsis thaliana At1g04070 mRNA, complete cds
          Length = 285

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 gcgatccacgccgccttccc 329
           ||||||||||||||||||||
Sbjct: 158 gcgatccacgccgccttccc 139
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>gb|DQ478408.1| Homo sapiens neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; neighbor
              of BRCA1 gene 2 (NBR2) gene, complete cds; and early onset
              breast cancer 1 (BRCA1) gene, partial cds
          Length = 150505

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caggcaaaatgaaatgtgaa 159
              ||||||||||||||||||||
Sbjct: 135642 caggcaaaatgaaatgtgaa 135661
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>gb|DQ190457.1| Homo sapiens clone mck41_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; hypothetical protein LOC10230 (NBR2) gene, complete
              cds; and breast cancer 1 early onset (BRCA1) gene, partial
              cds
          Length = 147576

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caggcaaaatgaaatgtgaa 159
              ||||||||||||||||||||
Sbjct: 132705 caggcaaaatgaaatgtgaa 132724
to top
>gb|DQ190456.1| Homo sapiens clone mck578_U neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 150669

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caggcaaaatgaaatgtgaa 159
              ||||||||||||||||||||
Sbjct: 132747 caggcaaaatgaaatgtgaa 132766
to top
>gb|DQ190455.1| Homo sapiens clone mck554_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 155470

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caggcaaaatgaaatgtgaa 159
              ||||||||||||||||||||
Sbjct: 135310 caggcaaaatgaaatgtgaa 135329
to top
>gb|DQ190454.1| Homo sapiens clone mck43_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 150582

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caggcaaaatgaaatgtgaa 159
              ||||||||||||||||||||
Sbjct: 128166 caggcaaaatgaaatgtgaa 128185
to top
>gb|DQ190453.1| Homo sapiens clone mck55_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 156879

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caggcaaaatgaaatgtgaa 159
              ||||||||||||||||||||
Sbjct: 134010 caggcaaaatgaaatgtgaa 134029
to top
>gb|DQ190452.1| Homo sapiens clone mck94_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 156121

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caggcaaaatgaaatgtgaa 159
              ||||||||||||||||||||
Sbjct: 131648 caggcaaaatgaaatgtgaa 131667
to top
>gb|DQ190451.1| Homo sapiens clone mck47_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 161765

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caggcaaaatgaaatgtgaa 159
              ||||||||||||||||||||
Sbjct: 131718 caggcaaaatgaaatgtgaa 131737
to top
>gb|DQ190450.1| Homo sapiens clone mck432_A neighbor of BRCA1 gene 1 (NBR1) gene, partial
              cds; and hypothetical protein LOC10230 (NBR2) and breast
              cancer 1 early onset (BRCA1) genes, complete cds
          Length = 167910

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caggcaaaatgaaatgtgaa 159
              ||||||||||||||||||||
Sbjct: 132594 caggcaaaatgaaatgtgaa 132613
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>ref|XM_755061.1| Ustilago maydis 521 hypothetical protein (UM04007.1) partial mRNA
          Length = 861

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  cgagcaggagaaggagcagt 53
           ||||||||||||||||||||
Sbjct: 492 cgagcaggagaaggagcagt 511
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>gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome 1, complete sequence
          Length = 213412

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    aaggcatgatctttctctcc 88
             ||||||||||||||||||||
Sbjct: 37036 aaggcatgatctttctctcc 37055
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>gb|AC124173.2| Mus musculus BAC clone RP23-173I4 from 13, complete sequence
          Length = 207960

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    aagaggagagatttatttgg 193
              ||||||||||||||||||||
Sbjct: 161363 aagaggagagatttatttgg 161344
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 363     ggcctcgcggccgtgcgccg 382
               ||||||||||||||||||||
Sbjct: 2069850 ggcctcgcggccgtgcgccg 2069869
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>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   ccccgccaccgccgcggcct 367
             ||||||||||||||||||||
Sbjct: 57093 ccccgccaccgccgcggcct 57074
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>emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0054B09,
             complete sequence
          Length = 146506

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   gtcgaccatctgctgctcgc 259
             ||||||||||||||||||||
Sbjct: 20505 gtcgaccatctgctgctcgc 20486
to top
>emb|AL672114.1|MLO672114 Mesorhizobium loti R7A symbiosis island; segment 3/4
          Length = 149050

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   cctcgcggccgtgcgccgcc 384
             ||||||||||||||||||||
Sbjct: 98866 cctcgcggccgtgcgccgcc 98847
to top
>gb|AF533655.1| Geobacillus stearothermophilus aminopeptidase-like protein, cysteine
            desulfurase (iscS), and proline dipeptidase genes,
            complete cds
          Length = 3461

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 336  ccgcagcagcttccccgccaccgc 359
            |||| |||||||||||||||||||
Sbjct: 2644 ccgctgcagcttccccgccaccgc 2621
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>gb|AY124010.1| Homo sapiens interleukin 1 receptor, type II (IL1R2) gene, complete
            cds
          Length = 23160

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   gaaggagcagtcacagtcac 62
            ||||||||||||||||||||
Sbjct: 7067 gaaggagcagtcacagtcac 7086
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>gb|AC097534.3| Homo sapiens BAC clone RP11-798M19 from 4, complete sequence
          Length = 139455

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   ttatgataccaggcaaaatg 150
             ||||||||||||||||||||
Sbjct: 10267 ttatgataccaggcaaaatg 10286
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>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome
          Length = 1072950

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     agcagtcacagtcacaacaa 67
              ||||||||||||||||||||
Sbjct: 464072 agcagtcacagtcacaacaa 464091
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>gb|AC161887.5| Mus musculus 6 BAC RP23-75P5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 227751

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    ataacagacacagacacactagtg 113
             ||||||||||||||||||| ||||
Sbjct: 37600 ataacagacacagacacacaagtg 37577
to top
>gb|DQ361836.1| Shigella boydii strain G1226 GalK (galK) gene, complete cds
          Length = 1196

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 65  caacaaggcatgatctttct 84
           ||||||||||||||||||||
Sbjct: 591 caacaaggcatgatctttct 572
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>gb|AY273801.1| Homo sapiens breast cancer 1, early onset (BRCA1) gene, complete cds
          Length = 82899

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   caggcaaaatgaaatgtgaa 159
             ||||||||||||||||||||
Sbjct: 64461 caggcaaaatgaaatgtgaa 64480
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 240      gtcgaccatctgctgctcgc 259
                ||||||||||||||||||||
Sbjct: 14182739 gtcgaccatctgctgctcgc 14182720
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 368      cgcggccgtgcgccgccacc 387
                ||||||||||||||||||||
Sbjct: 15022951 cgcggccgtgcgccgccacc 15022932
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
             complete sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   caaaatgaaatgtgaaggac 163
             ||||||||||||||||||||
Sbjct: 45606 caaaatgaaatgtgaaggac 45625
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>emb|BX818699.1|CNS0AEFA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL92ZH09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 561

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 gcgatccacgccgccttccc 329
           ||||||||||||||||||||
Sbjct: 207 gcgatccacgccgccttccc 188
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>emb|BX818651.1|CNS0ACO6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL90ZB01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 570

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 gcgatccacgccgccttccc 329
           ||||||||||||||||||||
Sbjct: 164 gcgatccacgccgccttccc 145
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>emb|BX818437.1|CNS0ACQ7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL79ZB01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 568

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 gcgatccacgccgccttccc 329
           ||||||||||||||||||||
Sbjct: 164 gcgatccacgccgccttccc 145
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>gb|AC007165.4| Homo sapiens BAC clone RP11-451C2 from 2, complete sequence
          Length = 45813

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    gaaggagcagtcacagtcac 62
             ||||||||||||||||||||
Sbjct: 11869 gaaggagcagtcacagtcac 11888
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>gb|AC023108.4| Homo sapiens BAC clone RP11-121I13 from 2, complete sequence
          Length = 173794

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   aggcaaaatgaaatgtgaag 160
             ||||||||||||||||||||
Sbjct: 55213 aggcaaaatgaaatgtgaag 55194
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>gb|AY086260.1| Arabidopsis thaliana clone 23106 mRNA, complete sequence
          Length = 630

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 gcgatccacgccgccttccc 329
           ||||||||||||||||||||
Sbjct: 229 gcgatccacgccgccttccc 210
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>gb|AC135721.4| Homo sapiens, clone CTD-3199J23, complete sequence
          Length = 150472

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   caggcaaaatgaaatgtgaa 159
             ||||||||||||||||||||
Sbjct: 97504 caggcaaaatgaaatgtgaa 97523
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 365     cctcgcggccgtgcgccgcc 384
               ||||||||||||||||||||
Sbjct: 4748614 cctcgcggccgtgcgccgcc 4748633
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>dbj|AK175541.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-96-D08
          Length = 568

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 gcgatccacgccgccttccc 329
           ||||||||||||||||||||
Sbjct: 210 gcgatccacgccgccttccc 191
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>gb|AC158685.4| Mus musculus 6 BAC RP23-284D11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 191856

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 90     ataacagacacagacacactagtg 113
              ||||||||||||||||||| ||||
Sbjct: 105864 ataacagacacagacacacaagtg 105841
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>dbj|AP004706.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0683E12
          Length = 165766

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   cgcggccgtgcgccgccacc 387
             ||||||||||||||||||||
Sbjct: 13203 cgcggccgtgcgccgccacc 13184
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>dbj|AP004621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0689D06
          Length = 146551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   cgcggccgtgcgccgccacc 387
             ||||||||||||||||||||
Sbjct: 21865 cgcggccgtgcgccgccacc 21846
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>dbj|AK121305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H18, full
           insert sequence
          Length = 1981

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 gtcgaccatctgctgctcgc 259
           ||||||||||||||||||||
Sbjct: 141 gtcgaccatctgctgctcgc 122
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>emb|AJ333270.1|HSA333270 Homo sapiens genomic sequence surrounding NotI site, clone
           NR3-BE15RS
          Length = 693

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 cttatgataccaggcaaaat 149
           ||||||||||||||||||||
Sbjct: 351 cttatgataccaggcaaaat 370
to top
>dbj|AK071948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013078J21, full
           insert sequence
          Length = 1334

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 gtcgaccatctgctgctcgc 259
           ||||||||||||||||||||
Sbjct: 608 gtcgaccatctgctgctcgc 589
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>gb|AC134787.6| Mus musculus chromosome 1, clone RP24-477E13, complete sequence
          Length = 150960

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    aaggcatgatctttctctcc 88
             ||||||||||||||||||||
Sbjct: 49979 aaggcatgatctttctctcc 49960
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>emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on chromosome 4, complete
              sequence
          Length = 157168

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 347    tccccgccaccgccgcggcctcgc 370
              |||||||| |||||||||||||||
Sbjct: 138497 tccccgccgccgccgcggcctcgc 138474
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>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence
          Length = 203581

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    ccaaaagagcctgctgctgg 231
              ||||||||||||||||||||
Sbjct: 150345 ccaaaagagcctgctgctgg 150364
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>emb|AL929199.11| Mouse DNA sequence from clone RP23-458A10 on chromosome 2, complete
             sequence
          Length = 95855

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    acagtcacaacaacaaggca 74
             ||||||||||||||||||||
Sbjct: 78875 acagtcacaacaacaaggca 78856
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>gb|AC002411.1|F20D22 Arabidopsis thaliana chromosome 1 BAC F20D22 sequence, complete
             sequence
          Length = 78259

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   gcgatccacgccgccttccc 329
             ||||||||||||||||||||
Sbjct: 74918 gcgatccacgccgccttccc 74899
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>gb|U48401.1|RNU48401 Rattus norvegicus TGF-beta type I receptor gene, exon 1
          Length = 1766

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 347  tccccgccaccgccgcggcctcgc 370
            |||||||| |||||||||||||||
Sbjct: 1559 tccccgccgccgccgcggcctcgc 1536
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>dbj|AB215778.1| Equus caballus DNA, microsatellite TKY1835
          Length = 264

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  gataacagacacagacacac 108
           ||||||||||||||||||||
Sbjct: 72  gataacagacacagacacac 91
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>emb|AL627211.13| Mouse DNA sequence from clone RP23-104G20 on chromosome 4, complete
            sequence
          Length = 216944

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  aagaggagagatttatttgg 193
            ||||||||||||||||||||
Sbjct: 3329 aagaggagagatttatttgg 3348
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>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10,
             complete sequence
          Length = 156772

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   caaaatgaaatgtgaaggac 163
             ||||||||||||||||||||
Sbjct: 45606 caaaatgaaatgtgaaggac 45625
to top
>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0098I11, complete sequence
          Length = 122970

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   caaaatgaaatgtgaaggac 163
             ||||||||||||||||||||
Sbjct: 54993 caaaatgaaatgtgaaggac 55012
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>gb|M30948.1|GORRGIT Gorilla rRNA gene internal transcribed spacer 1 (ITS1)
          Length = 987

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 cgccaccgccgcggcctcgc 370
           ||||||||||||||||||||
Sbjct: 32  cgccaccgccgcggcctcgc 13
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>gb|AC003027.1| Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence,
            complete sequence
          Length = 119914

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  gcgatccacgccgccttccc 329
            ||||||||||||||||||||
Sbjct: 5921 gcgatccacgccgccttccc 5902


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,860,877
Number of Sequences: 3902068
Number of extensions: 3860877
Number of successful extensions: 111134
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110583
Number of HSP's gapped (non-prelim): 551
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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