ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O1002_MOUSE (Q8VFK2) Olfactory receptor 1002 (Olfactory receptor... 30 1.5
2SPA4L_MOUSE (Q9DA32) Sperm-associated antigen 4-like protein 29 2.5
3UR2R_HUMAN (Q9UKP6) Urotensin II receptor (UR-II-R) (G-protein c... 28 5.5
4UD13_RAT (Q64637) UDP-glucuronosyltransferase 1-3 precursor (EC ... 28 7.2
5UD15_HUMAN (P35504) UDP-glucuronosyltransferase 1-5 precursor (E... 27 9.4
6Y3428_MYCTU (Q50700) Putative transposase Rv3428c 27 9.4

>O1002_MOUSE (Q8VFK2) Olfactory receptor 1002 (Olfactory receptor 175-2)|
          Length = 318

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
 Frame = -3

Query: 232 RYLSIIKPILY-----MRACVVHVVRAR-----TTLLRDESIMYE*YCMVQLLNLF---L 92
           RY++I KP+LY      R CV  V+        +T++   S     YC   L+N F   L
Sbjct: 122 RYVAICKPLLYTLIMSQRVCVQLVIGPYSIGLISTVVHTTSAFILPYCGPNLINHFFCDL 181

Query: 91  LCIFMMYMHDMHMNKYV 41
           L +  +   D  MNK++
Sbjct: 182 LPVLSLACADTQMNKHL 198



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>SPA4L_MOUSE (Q9DA32) Sperm-associated antigen 4-like protein|
          Length = 348

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 118 MVQLLNLFLLCIFMMYMHDMHMNKYVSVW 32
           +++ + L +LC+F  +M  MH+   V VW
Sbjct: 74  VMEKMGLLVLCVFGFWMFSMHLPSKVEVW 102



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>UR2R_HUMAN (Q9UKP6) Urotensin II receptor (UR-II-R) (G-protein coupled|
           receptor 14)
          Length = 389

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +3

Query: 120 QYHSYIMLSSRSRVVRALTTCTTHARMYSMGLIILR*RTLCGCSYSDH------GLASGS 281
           QYH   +    +R+V  LTTC T+    +   +     TL   +Y DH      G  SG 
Sbjct: 282 QYHQAPLAPRTARIVNYLTTCLTYGNSCANPFLY----TLLTRNYRDHLRGRVRGPGSGG 337

Query: 282 GK 287
           G+
Sbjct: 338 GR 339



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>UD13_RAT (Q64637) UDP-glucuronosyltransferase 1-3 precursor (EC 2.4.1.17)|
           (UDPGT) (UGT1*3) (UGT1-03) (UGT1.3) (UGT1A3) (B3)
          Length = 531

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 222 VLSNPYYTCARVLYMSLEPALLYFVTRALC 133
           VL++P++ C  VL M L    ++F+   LC
Sbjct: 146 VLTDPFFPCGAVLAMYLRVPAVFFLQSMLC 175



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>UD15_HUMAN (P35504) UDP-glucuronosyltransferase 1-5 precursor (EC 2.4.1.17)|
           (UDP-glucuronosyltransferase 1A5) (UDPGT) (UGT1*5)
           (UGT1-05) (UGT1.5) (UGT-1E) (UGT1E)
          Length = 534

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 222 VLSNPYYTCARVLYMSLEPALLYFVTRALCMSDTAWCSCSICSFYV 85
           VL++P++ CA VL   L    ++F+    C  D     C   S Y+
Sbjct: 149 VLTDPFHLCAAVLAKYLSIPAVFFLRNIPCDLDFKGTQCPNPSSYI 194



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>Y3428_MYCTU (Q50700) Putative transposase Rv3428c|
          Length = 410

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 153 FVTRALCMSDTAWCSCSICSF 91
           FV   + M  TAWC+C + +F
Sbjct: 86  FVRPVIRMDQTAWCACHVAAF 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,559,972
Number of Sequences: 219361
Number of extensions: 763704
Number of successful extensions: 1582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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