ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC121101.8| Mus musculus chromosome 8, clone RP24-511A8, comp... 46 0.073
2gb|AC111011.6| Mus musculus BAC clone RP23-424D18 from 1, comple... 46 0.073
3emb|CR932579.1|CNS0KYB9 Paramecium tetraurelia, Small GTPase rab... 42 1.1
4emb|Z69380.1|SPAC4H3 S.pombe chromosome I cosmid c4H3 42 1.1
5emb|BX511175.5| Zebrafish DNA sequence from clone DKEY-197A18 in... 42 1.1
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
7dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
8dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
9emb|CR396590.9| Zebrafish DNA sequence from clone CH211-238P8 in... 42 1.1
10emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, c... 42 1.1
11emb|AL845426.9| Mouse DNA sequence from clone RP23-289M11 on chr... 42 1.1
12gb|AC146967.3| Bos taurus clone RP42-279M12, complete sequence 40 4.5
13gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
14gb|AC154384.2| Mus musculus BAC clone RP23-39K21 from chromosome... 40 4.5
15gb|DP000008.1| Bos taurus target 1 genomic scaffold 40 4.5
16gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosom... 40 4.5
17emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c2... 40 4.5
18emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in... 40 4.5
19gb|AC124766.3| Mus musculus BAC clone RP23-204I12 from 1, comple... 40 4.5
20gb|AC108838.20| Mus musculus chromosome 18, clone RP23-326N14, c... 40 4.5
21gb|AC164089.4| Mus musculus BAC clone RP23-70G12 from chromosome... 40 4.5
22gb|AC124962.19| Medicago truncatula clone mth2-24d19, complete s... 40 4.5
23gb|AC123975.16| Medicago truncatula clone mth2-12m13, complete s... 40 4.5
24emb|BX640546.13| Zebrafish DNA sequence from clone CH211-152L3 i... 40 4.5
25ref|NM_004022.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
26ref|NM_004021.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
27ref|NM_004014.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
28ref|NM_004023.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
29ref|NM_004011.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
30ref|NM_004015.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
31ref|NM_004013.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
32ref|NM_004006.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
33ref|NM_004012.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
34ref|NM_004007.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
35ref|NM_004009.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
36ref|NM_004010.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
37ref|NM_000109.2| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
38ref|NM_004020.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
39ref|NM_004016.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
40ref|NM_004017.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
41ref|NM_004018.1| Homo sapiens dystrophin (muscular dystrophy, Du... 40 4.5
42emb|AL390242.17| Human DNA sequence from clone RP11-31F15 on chr... 40 4.5
43emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in... 40 4.5
44gb|BC094758.1| Homo sapiens dystrophin (muscular dystrophy, Duch... 40 4.5
45gb|BC028720.1| Homo sapiens dystrophin (muscular dystrophy, Duch... 40 4.5
46gb|BC070078.1| Homo sapiens dystrophin (muscular dystrophy, Duch... 40 4.5
47emb|AL935165.5| Zebrafish DNA sequence from clone CH211-198D18 i... 40 4.5
48emb|BX248106.7| Zebrafish DNA sequence from clone CH211-123P13 i... 40 4.5
49emb|CR394567.7| Zebrafish DNA sequence from clone DKEY-88M1 in l... 40 4.5
50gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O1... 40 4.5
51emb|BX511270.9| Zebrafish DNA sequence from clone DKEY-35N12 in ... 40 4.5
52emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in... 40 4.5
53tpg|BK005032.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 4.5
54gb|AC006061.1| Homo sapiens X BAC GSHB-19O24 (Genome Systems Hum... 40 4.5
55gb|AC025800.10| Homo sapiens chromosome 8, clone RP11-600N23, co... 40 4.5
56gb|AF331456.1|AF331456 Heterodera glycines chemosensory receptor... 40 4.5
57emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 i... 40 4.5
58gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (AHC2)... 40 4.5
59gb|AC102189.13| Mus musculus chromosome 8, clone RP24-216J7, com... 40 4.5
60emb|BX539338.4| Zebrafish DNA sequence from clone DKEY-240P9 in ... 40 4.5
61dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
62dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
63emb|AL929396.18| Zebrafish DNA sequence from clone CH211-93G23 i... 40 4.5
64gb|AC087773.1|AC087773 Genomic Sequence For Lycopersicon esculen... 40 4.5
65gb|AC084653.1|CBRG45O14 Caenorhabditis briggsae cosmid G45O14, c... 40 4.5
66gb|M18533.1|HUMDYS Homo sapiens dystrophin (DMD) mRNA, complete cds 40 4.5
67dbj|AP003746.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
68emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 i... 40 4.5
69dbj|AK129855.1| Homo sapiens cDNA FLJ26345 fis, clone HRT03668 40 4.5
70gb|AC156367.3| Bos taurus clone RP42-394P24, complete sequence 40 4.5
71gb|AC004998.2|AC004998 Homo sapiens PAC clone RP1-164D5 from Xq2... 40 4.5
72gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, comple... 40 4.5
73emb|CR381594.6| Zebrafish DNA sequence from clone DKEY-12H3 in l... 40 4.5
74emb|CR847788.7| Zebrafish DNA sequence from clone CH211-249H16 i... 40 4.5
75emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 40 4.5
76emb|CT573090.2| RP43-052E01, complete sequence 40 4.5
77gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
78emb|AL928864.11| Zebrafish DNA sequence from clone CH211-10P21, ... 40 4.5
79emb|AL928672.14| Zebrafish DNA sequence from clone CH211-136O4, ... 40 4.5
80gb|AF052733.1|AF052733 Heterodera glycines beta-1,4-endoglucanas... 40 4.5
81emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chrom... 40 4.5
82emb|AL807832.6| Mouse DNA sequence from clone RP23-198D21 on chr... 40 4.5
83emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus co... 40 4.5
84dbj|AB208836.1| Homo sapiens mRNA for dystrophin Dp427c isoform ... 40 4.5 
>gb|AC121101.8| Mus musculus chromosome 8, clone RP24-511A8, complete sequence
          Length = 158957

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 104   atgttaattaattaattattcaa 126
             |||||||||||||||||||||||
Sbjct: 36206 atgttaattaattaattattcaa 36228
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>gb|AC111011.6| Mus musculus BAC clone RP23-424D18 from 1, complete sequence
          Length = 201846

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 4     attttaagagcataatgtgatta 26
             |||||||||||||||||||||||
Sbjct: 95684 attttaagagcataatgtgatta 95706
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>emb|CR932579.1|CNS0KYB9 Paramecium tetraurelia, Small GTPase rab, putative, complete gene
          Length = 3001

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 18   atgtgattatcacaattgaaaattataaa 46
            |||||||||||| ||||||||||| ||||
Sbjct: 1216 atgtgattatcagaattgaaaattttaaa 1188
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>emb|Z69380.1|SPAC4H3 S.pombe chromosome I cosmid c4H3
          Length = 34635

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   gttaattaattaattattcaa 126
             |||||||||||||||||||||
Sbjct: 15265 gttaattaattaattattcaa 15285
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>emb|BX511175.5| Zebrafish DNA sequence from clone DKEY-197A18 in linkage group 21,
              complete sequence
          Length = 231778

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 105    tgttaattaattaattattca 125
              |||||||||||||||||||||
Sbjct: 161513 tgttaattaattaattattca 161493
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 107      ttaattaattaattattcaac 127
                |||||||||||||||||||||
Sbjct: 20641526 ttaattaattaattattcaac 20641546
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>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1112_E07
          Length = 132055

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   ttaattaattaattattcaac 127
             |||||||||||||||||||||
Sbjct: 35137 ttaattaattaattattcaac 35157
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>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0515E01
          Length = 140063

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 107    ttaattaattaattattcaac 127
              |||||||||||||||||||||
Sbjct: 107184 ttaattaattaattattcaac 107204
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>emb|CR396590.9| Zebrafish DNA sequence from clone CH211-238P8 in linkage group 10,
             complete sequence
          Length = 153114

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   tgttaattaattaattattca 125
             |||||||||||||||||||||
Sbjct: 17576 tgttaattaattaattattca 17556
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>emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, complete sequence
          Length = 156592

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   catgttaattaattaattatt 123
             |||||||||||||||||||||
Sbjct: 73994 catgttaattaattaattatt 74014



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   catgttaattaattaattatt 123
             |||||||||||||||||||||
Sbjct: 73846 catgttaattaattaattatt 73866
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>emb|AL845426.9| Mouse DNA sequence from clone RP23-289M11 on chromosome 2, complete
              sequence
          Length = 181434

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    catgttaattaattaattatt 123
              |||||||||||||||||||||
Sbjct: 123608 catgttaattaattaattatt 123628
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>gb|AC146967.3| Bos taurus clone RP42-279M12, complete sequence
          Length = 186611

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tcacaattgaaaattataaa 46
             ||||||||||||||||||||
Sbjct: 17784 tcacaattgaaaattataaa 17765
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>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0004P24, complete sequence
          Length = 137721

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   acatgttaattaattaatta 121
             ||||||||||||||||||||
Sbjct: 13834 acatgttaattaattaatta 13815
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>gb|AC154384.2| Mus musculus BAC clone RP23-39K21 from chromosome 14, complete sequence
          Length = 242114

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ttaattaattaattattcaa 126
             ||||||||||||||||||||
Sbjct: 51375 ttaattaattaattattcaa 51394
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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      tcacaattgaaaattataaa 46
               ||||||||||||||||||||
Sbjct: 1903844 tcacaattgaaaattataaa 1903825
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>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence
          Length = 191104

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    atgttaattaattaattatt 123
              ||||||||||||||||||||
Sbjct: 102194 atgttaattaattaattatt 102213
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>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE
          Length = 243542

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      aaaattttaagagcataatg 20
              ||||||||||||||||||||
Sbjct: 203291 aaaattttaagagcataatg 203310
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>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5,
             complete sequence
          Length = 135495

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 18328 atgttaattaattaattatt 18347



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 9236 atgttaattaattaattatt 9255
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>gb|AC124766.3| Mus musculus BAC clone RP23-204I12 from 1, complete sequence
          Length = 196490

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    atgttaattaattaattatt 123
              ||||||||||||||||||||
Sbjct: 113292 atgttaattaattaattatt 113311
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>gb|AC108838.20| Mus musculus chromosome 18, clone RP23-326N14, complete sequence
          Length = 173862

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   gttaattaattaattattca 125
             ||||||||||||||||||||
Sbjct: 90098 gttaattaattaattattca 90117
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>gb|AC164089.4| Mus musculus BAC clone RP23-70G12 from chromosome 3, complete sequence
          Length = 223387

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   acatgttaattaattaatta 121
             ||||||||||||||||||||
Sbjct: 57997 acatgttaattaattaatta 57978
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>gb|AC124962.19| Medicago truncatula clone mth2-24d19, complete sequence
          Length = 126541

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    ttaattaattaattattcaacatc 130
              ||||||||||||||||||| ||||
Sbjct: 107467 ttaattaattaattattcatcatc 107444
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>gb|AC123975.16| Medicago truncatula clone mth2-12m13, complete sequence
          Length = 121884

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   ttaattaattaattattcaacatc 130
             ||||||||||||||||||| ||||
Sbjct: 91278 ttaattaattaattattcatcatc 91301
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>emb|BX640546.13| Zebrafish DNA sequence from clone CH211-152L3 in linkage group 5,
             complete sequence
          Length = 101103

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   ttaattaattaattattcaa 126
             ||||||||||||||||||||
Sbjct: 26583 ttaattaattaattattcaa 26564
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>ref|NM_004022.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant D140ab, mRNA
          Length = 7339

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 6557 atgttaattaattaattatt 6538
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>ref|NM_004021.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp140b, mRNA
          Length = 7378

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 6596 atgttaattaattaattatt 6577
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>ref|NM_004014.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp116, mRNA
          Length = 5623

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 4841 atgttaattaattaattatt 4822
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>ref|NM_004023.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp140bc, mRNA
          Length = 7048

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 6266 atgttaattaattaattatt 6247
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>ref|NM_004011.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp260-1, mRNA
          Length = 9773

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 8991 atgttaattaattaattatt 8972
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>ref|NM_004015.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp71, mRNA
          Length = 4623

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 3841 atgttaattaattaattatt 3822
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>ref|NM_004013.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp140, mRNA
          Length = 7410

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 6628 atgttaattaattaattatt 6609
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>ref|NM_004006.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker types)
             (DMD), transcript variant Dp427m, mRNA
          Length = 13993

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 13211 atgttaattaattaattatt 13192
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>ref|NM_004012.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp260-2, mRNA
          Length = 9916

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 9134 atgttaattaattaattatt 9115
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>ref|NM_004007.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker types)
             (DMD), transcript variant Dp427l, mRNA
          Length = 13764

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 12982 atgttaattaattaattatt 12963
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>ref|NM_004009.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker types)
             (DMD), transcript variant Dp427p1, mRNA
          Length = 14000

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 13218 atgttaattaattaattatt 13199
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>ref|NM_004010.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker types)
             (DMD), transcript variant Dp427p2, mRNA
          Length = 14082

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 13300 atgttaattaattaattatt 13281
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>ref|NM_000109.2| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker types)
             (DMD), transcript variant Dp427c, mRNA
          Length = 14069

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 13287 atgttaattaattaattatt 13268
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>ref|NM_004020.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp140c, mRNA
          Length = 7050

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 6268 atgttaattaattaattatt 6249
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>ref|NM_004016.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp71b, mRNA
          Length = 4591

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 3809 atgttaattaattaattatt 3790
to top
>ref|NM_004017.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp71a, mRNA
          Length = 4584

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 3802 atgttaattaattaattatt 3783
to top
>ref|NM_004018.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types) (DMD), transcript variant Dp71ab, mRNA
          Length = 4552

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 3770 atgttaattaattaattatt 3751
to top
>emb|AL390242.17| Human DNA sequence from clone RP11-31F15 on chromosome 1p13.1-13.3
             Contains the 3' end of a novel gene, the 5' end of a novel
             gene and the 3' end of a novel gene, complete sequence
          Length = 68883

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 56554 atgttaattaattaattatt 56535
to top
>emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in linkage group 21,
             complete sequence
          Length = 243457

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ttaattaattaattattcaa 126
             ||||||||||||||||||||
Sbjct: 45438 ttaattaattaattattcaa 45457
to top
>gb|BC094758.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types), transcript variant Dp71b, mRNA (cDNA clone
            IMAGE:30336570), complete cds
          Length = 4621

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 3823 atgttaattaattaattatt 3804
to top
>gb|BC028720.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types), transcript variant Dp71b, mRNA (cDNA clone
            IMAGE:4822807), complete cds
          Length = 4658

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 3860 atgttaattaattaattatt 3841
to top
>gb|BC070078.1| Homo sapiens dystrophin (muscular dystrophy, Duchenne and Becker
            types), transcript variant Dp71a, mRNA (cDNA clone
            IMAGE:5262850), complete cds
          Length = 4598

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 3801 atgttaattaattaattatt 3782
to top
>emb|AL935165.5| Zebrafish DNA sequence from clone CH211-198D18 in linkage group 4
             Contains the cugbp2 gene for CUG triplet repeat, RNA
             binding protein 2, the 5' end of a novel gene and a CpG
             island, complete sequence
          Length = 182748

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ttaattaattaattattcaa 126
             ||||||||||||||||||||
Sbjct: 70232 ttaattaattaattattcaa 70251
to top
>emb|BX248106.7| Zebrafish DNA sequence from clone CH211-123P13 in linkage group 17,
             complete sequence
          Length = 140228

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   ttaattaattaattattcaa 126
             ||||||||||||||||||||
Sbjct: 42520 ttaattaattaattattcaa 42501
to top
>emb|CR394567.7| Zebrafish DNA sequence from clone DKEY-88M1 in linkage group 9,
             complete sequence
          Length = 60177

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ttaattaattaattattcaa 126
             ||||||||||||||||||||
Sbjct: 40330 ttaattaattaattattcaa 40349
to top
>gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence
          Length = 70347

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   ttaattaattaattattcaacatc 130
             ||||||||||||||||||| ||||
Sbjct: 49679 ttaattaattaattattcatcatc 49702
to top
>emb|BX511270.9| Zebrafish DNA sequence from clone DKEY-35N12 in linkage group 14,
              complete sequence
          Length = 246102

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    ttaattaattaattattcaa 126
              ||||||||||||||||||||
Sbjct: 169799 ttaattaattaattattcaa 169818
to top
>emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in linkage group 13,
             complete sequence
          Length = 193538

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 99    agcacatgttaattaattaattattcaa 126
             ||||||| ||||||||||||||| ||||
Sbjct: 79117 agcacattttaattaattaattaatcaa 79144
to top
>tpg|BK005032.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
            transcription factor 29 (WRKY29) gene, complete cds
          Length = 3368

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  cacatgttaattaattaatt 120
            ||||||||||||||||||||
Sbjct: 2901 cacatgttaattaattaatt 2882
to top
>gb|AC006061.1| Homo sapiens X BAC GSHB-19O24 (Genome Systems Human BAC Library)
             complete sequence
          Length = 98056

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 91783 atgttaattaattaattatt 91802
to top
>gb|AC025800.10| Homo sapiens chromosome 8, clone RP11-600N23, complete sequence
          Length = 185359

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    atcacaattgaaaattataa 45
             ||||||||||||||||||||
Sbjct: 72609 atcacaattgaaaattataa 72628
to top
>gb|AF331456.1|AF331456 Heterodera glycines chemosensory receptor gene, complete sequence
          Length = 7127

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 107  ttaattaattaattattcaa 126
            ||||||||||||||||||||
Sbjct: 2040 ttaattaattaattattcaa 2021
to top
>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15,
              complete sequence
          Length = 205794

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ttaattaattaattattcaa 126
              ||||||||||||||||||||
Sbjct: 123459 ttaattaattaattattcaa 123440
to top
>gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (AHC2) gene, complete cds
          Length = 68460

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 102   acatgttaattaattaattattcaacat 129
             |||||| |||||||||||| ||||||||
Sbjct: 35917 acatgtaaattaattaatttttcaacat 35944
to top
>gb|AC102189.13| Mus musculus chromosome 8, clone RP24-216J7, complete sequence
          Length = 136839

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 7480 atgttaattaattaattatt 7499
to top
>emb|BX539338.4| Zebrafish DNA sequence from clone DKEY-240P9 in linkage group 2,
             complete sequence
          Length = 99688

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ttttaagagcataatgtgat 24
             ||||||||||||||||||||
Sbjct: 17445 ttttaagagcataatgtgat 17464
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     acatgttaattaattaatta 121
               ||||||||||||||||||||
Sbjct: 7803121 acatgttaattaattaatta 7803140
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    cacatgttaattaattaatt 120
              ||||||||||||||||||||
Sbjct: 630286 cacatgttaattaattaatt 630305
to top
>emb|AL929396.18| Zebrafish DNA sequence from clone CH211-93G23 in linkage group 1,
              complete sequence
          Length = 169067

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    gttaattaattaattattca 125
              ||||||||||||||||||||
Sbjct: 100615 gttaattaattaattattca 100634
to top
>gb|AC087773.1|AC087773 Genomic Sequence For Lycopersicon esculentum Clone T62O11, complete
             sequence
          Length = 70497

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   ttaattaattaattattcaacatc 130
             ||||||||||||||||||| ||||
Sbjct: 49679 ttaattaattaattattcatcatc 49702
to top
>gb|AC084653.1|CBRG45O14 Caenorhabditis briggsae cosmid G45O14, complete sequence
          Length = 43983

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   acatgttaattaattaattattca 125
             |||| |||||||||||||||||||
Sbjct: 43689 acattttaattaattaattattca 43666
to top
>gb|M18533.1|HUMDYS Homo sapiens dystrophin (DMD) mRNA, complete cds
          Length = 13957

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 13175 atgttaattaattaattatt 13156
to top
>dbj|AP003746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1123_C12
          Length = 114309

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   cacatgttaattaattaatt 120
             ||||||||||||||||||||
Sbjct: 64788 cacatgttaattaattaatt 64807
to top
>emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 in linkage group 6,
             complete sequence
          Length = 167320

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   acatgttaattaattaatta 121
             ||||||||||||||||||||
Sbjct: 46405 acatgttaattaattaatta 46424
to top
>dbj|AK129855.1| Homo sapiens cDNA FLJ26345 fis, clone HRT03668
          Length = 2563

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 1781 atgttaattaattaattatt 1762
to top
>gb|AC156367.3| Bos taurus clone RP42-394P24, complete sequence
          Length = 78774

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tcacaattgaaaattataaa 46
             ||||||||||||||||||||
Sbjct: 77867 tcacaattgaaaattataaa 77848
to top
>gb|AC004998.2|AC004998 Homo sapiens PAC clone RP1-164D5 from Xq23, complete sequence
          Length = 135572

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   acatgttaattaattaatta 121
             ||||||||||||||||||||
Sbjct: 98091 acatgttaattaattaatta 98110
to top
>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence
          Length = 176649

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 12773 atgttaattaattaattatt 12792
to top
>emb|CR381594.6| Zebrafish DNA sequence from clone DKEY-12H3 in linkage group 19,
             complete sequence
          Length = 182645

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ttaattaattaattattcaa 126
             ||||||||||||||||||||
Sbjct: 30935 ttaattaattaattattcaa 30954
to top
>emb|CR847788.7| Zebrafish DNA sequence from clone CH211-249H16 in linkage group 10,
             complete sequence
          Length = 176964

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gttaattaattaattattca 125
             ||||||||||||||||||||
Sbjct: 53125 gttaattaattaattattca 53106
to top
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    ttaattaattaattattcaa 126
              ||||||||||||||||||||
Sbjct: 242506 ttaattaattaattattcaa 242525
to top
>emb|CT573090.2| RP43-052E01, complete sequence
          Length = 161118

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   atgttaattaattaattatt 123
             ||||||||||||||||||||
Sbjct: 88948 atgttaattaattaattatt 88929
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     acatgttaattaattaatta 121
               ||||||||||||||||||||
Sbjct: 7873208 acatgttaattaattaatta 7873227
to top
>emb|AL928864.11| Zebrafish DNA sequence from clone CH211-10P21, complete sequence
          Length = 181508

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ttaattaattaattattcaa 126
             ||||||||||||||||||||
Sbjct: 58905 ttaattaattaattattcaa 58924
to top
>emb|AL928672.14| Zebrafish DNA sequence from clone CH211-136O4, complete sequence
          Length = 187939

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ttaattaattaattattcaa 126
              ||||||||||||||||||||
Sbjct: 137803 ttaattaattaattattcaa 137784
to top
>gb|AF052733.1|AF052733 Heterodera glycines beta-1,4-endoglucanase-1 precursor (HG-eng-1)
           gene, complete cds
          Length = 5368

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 ttaattaattaattattcaa 126
           ||||||||||||||||||||
Sbjct: 456 ttaattaattaattattcaa 475
to top
>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete
              sequence
          Length = 232110

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    atgttaattaattaattatt 123
              ||||||||||||||||||||
Sbjct: 227715 atgttaattaattaattatt 227696
to top
>emb|AL807832.6| Mouse DNA sequence from clone RP23-198D21 on chromosome 2, complete
             sequence
          Length = 192480

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ttaattaattaattattcaa 126
             ||||||||||||||||||||
Sbjct: 78908 ttaattaattaattattcaa 78927
to top
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial
              variable region, strain 129/Sv
          Length = 1382053

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ttaattaattaattattcaa 126
              ||||||||||||||||||||
Sbjct: 161665 ttaattaattaattattcaa 161646
to top
>dbj|AB208836.1| Homo sapiens mRNA for dystrophin Dp427c isoform variant protein
          Length = 6801

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  atgttaattaattaattatt 123
            ||||||||||||||||||||
Sbjct: 6012 atgttaattaattaattatt 5993


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,944,630
Number of Sequences: 3902068
Number of extensions: 2944630
Number of successful extensions: 141462
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140767
Number of HSP's gapped (non-prelim): 695
length of query: 339
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 317
effective length of database: 17,147,199,772
effective search space: 5435662327724
effective search space used: 5435662327724
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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