Clone Name | rbart59b10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_385813.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05637.1) partial mRNA Length = 1032 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 236 acagcaactgcagacgatgatg 257 |||||||||||||||||||||| Sbjct: 436 acagcaactgcagacgatgatg 457
>emb|BX813333.7| Mouse DNA sequence from clone RP23-255A6 on chromosome 2, complete sequence Length = 163063 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 146 aaacaagcaaattaaccaacaaaga 170 |||||||||||||||| |||||||| Sbjct: 138494 aaacaagcaaattaactaacaaaga 138470
>emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chromosome 4, complete sequence Length = 223854 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 cttccacctcgccttctttctcctc 294 |||||||||| |||||||||||||| Sbjct: 157067 cttccacctctccttctttctcctc 157091
>ref|NM_202942.1| Arabidopsis thaliana unknown protein AT4G32900 transcript variant AT4G32900.2 mRNA, complete cds Length = 840 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acaagcaaattaaccaacaa 167 |||||||||||||||||||| Sbjct: 780 acaagcaaattaaccaacaa 761
>ref|NM_119443.1| Arabidopsis thaliana unknown protein AT4G32900 transcript variant AT4G32900.1 mRNA, complete cds Length = 862 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acaagcaaattaaccaacaa 167 |||||||||||||||||||| Sbjct: 788 acaagcaaattaaccaacaa 769
>gb|BC103727.1| Homo sapiens kinesin light chain 4, transcript variant 1, mRNA (cDNA clone MGC:111777 IMAGE:6157949), complete cds Length = 2351 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 561 tcgccttctttctcctccga 542
>ref|XM_518486.1| PREDICTED: Pan troglodytes similar to PTK7 protein tyrosine kinase 7 isoform a precursor; colon carcinoma kinase-4; protein-tyrosine kinase PTK7 (LOC462708), mRNA Length = 6377 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 971 tcgccttctttctcctccga 952
>gb|BC080637.1| Homo sapiens kinesin light chain 4, transcript variant 1, mRNA (cDNA clone MGC:99549 IMAGE:6573021), complete cds Length = 2361 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 563 tcgccttctttctcctccga 544
>gb|BC012357.1| Homo sapiens kinesin light chain 4, transcript variant 4, mRNA (cDNA clone IMAGE:4654235), complete cds Length = 1265 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 564 tcgccttctttctcctccga 545
>gb|AC005538.3| Homo sapiens BAC clone RP11-332L11 from 2, complete sequence Length = 193627 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 caaacaagcaaattaaccaacaaa 168 ||||||||||||| |||||||||| Sbjct: 156411 caaacaagcaaataaaccaacaaa 156434
>ref|NM_138343.2| Homo sapiens kinesin light chain 4 (KLC4), transcript variant 4, mRNA Length = 1284 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 583 tcgccttctttctcctccga 564
>ref|NM_201523.1| Homo sapiens kinesin light chain 4 (KLC4), transcript variant 3, mRNA Length = 2674 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 879 tcgccttctttctcctccga 860
>ref|NM_201522.1| Homo sapiens kinesin light chain 4 (KLC4), transcript variant 2, mRNA Length = 2488 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 693 tcgccttctttctcctccga 674
>ref|NM_201521.1| Homo sapiens kinesin light chain 4 (KLC4), transcript variant 1, mRNA Length = 2378 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 583 tcgccttctttctcctccga 564
>gb|AC129211.3| Mus musculus BAC clone RP24-348E18 from chromosome 8, complete sequence Length = 167455 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggatacttggccctcaagg 40 |||||||||||||||||||| Sbjct: 80704 tggatacttggccctcaagg 80685
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gtgccttccacctcgccttc 285 |||||||||||||||||||| Sbjct: 29955 gtgccttccacctcgccttc 29974
>emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78 Length = 198669 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 acaagcaaattaaccaacaa 167 |||||||||||||||||||| Sbjct: 100564 acaagcaaattaaccaacaa 100583
>emb|AL031804.1|ATF26P21 Arabidopsis thaliana DNA chromosome 4, BAC clone F26P21 (ESSA project) Length = 94482 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 acaagcaaattaaccaacaa 167 |||||||||||||||||||| Sbjct: 9868 acaagcaaattaaccaacaa 9887
>emb|BX640717.1|HSM806788 Homo sapiens mRNA; cDNA DKFZp686J01192 (from clone DKFZp686J01192) Length = 2676 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 820 tcgccttctttctcctccga 801
>dbj|AK127894.1| Homo sapiens cDNA FLJ46000 fis, clone SMINT2010753, highly similar to Probable kinesin light chain 3 Length = 2373 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 596 tcgccttctttctcctccga 577
>dbj|AK127018.1| Homo sapiens cDNA FLJ45074 fis, clone BRAWH3027440, highly similar to Probable kinesin light chain 3 Length = 3604 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 1888 tcgccttctttctcctccga 1869
>dbj|AK094102.1| Homo sapiens cDNA FLJ36783 fis, clone ADRGL2001830, moderately similar to KINESIN LIGHT CHAIN Length = 2654 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 879 tcgccttctttctcctccga 860
>dbj|AK056393.1| Homo sapiens cDNA FLJ31831 fis, clone NT2RP6000123, moderately similar to KINESIN LIGHT CHAIN Length = 2364 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 583 tcgccttctttctcctccga 564
>dbj|AK055293.1| Homo sapiens cDNA FLJ30731 fis, clone FEBRA2000105, moderately similar to KINESIN LIGHT CHAIN Length = 2770 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcgccttctttctcctccga 297 |||||||||||||||||||| Sbjct: 1001 tcgccttctttctcctccga 982
>emb|BX829060.1|CNS0A4J2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL65ZC03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 778 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acaagcaaattaaccaacaa 167 |||||||||||||||||||| Sbjct: 717 acaagcaaattaaccaacaa 698
>emb|BX828774.1|CNS0A4J9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL37ZF03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 836 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acaagcaaattaaccaacaa 167 |||||||||||||||||||| Sbjct: 774 acaagcaaattaaccaacaa 755
>gb|AC159031.1| Pan troglodytes BAC clone CH251-381B17 from chromosome unknown, complete sequence Length = 177940 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 caaacaagcaaattaaccaacaaa 168 ||||||||||||| |||||||||| Sbjct: 83548 caaacaagcaaataaaccaacaaa 83525
>gb|AY089129.1| Arabidopsis thaliana clone 36835 mRNA, complete sequence Length = 862 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acaagcaaattaaccaacaa 167 |||||||||||||||||||| Sbjct: 788 acaagcaaattaaccaacaa 769
>emb|AL806525.23| Mouse DNA sequence from clone RP23-254N4 on chromosome 4, complete sequence Length = 209356 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 caaacaagcaaattaaccaacaaa 168 ||||||||||||| |||||||||| Sbjct: 132360 caaacaagcaaataaaccaacaaa 132337
>gb|AC172878.1| Brassica rapa subsp. pekinensis clone KBrH069E01, complete sequence Length = 53923 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 caaacaagcaaattaaccaa 164 |||||||||||||||||||| Sbjct: 29370 caaacaagcaaattaaccaa 29389 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,089,783 Number of Sequences: 3902068 Number of extensions: 2089783 Number of successful extensions: 36611 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36572 Number of HSP's gapped (non-prelim): 39 length of query: 329 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 307 effective length of database: 17,147,199,772 effective search space: 5264190330004 effective search space used: 5264190330004 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)