Clone Name | rbart59b08 |
---|---|
Clone Library Name | barley_pub |
>gb|AC133123.3| Homo sapiens 3 BAC RP11-441E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114080 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 59281 acaaaaatttgggaaataggtaaaa 59305
>gb|AC140112.3| Homo sapiens BAC clone RP11-1278I4 from UL, complete sequence Length = 216658 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 33363 acaaaaatttgggaaataggtaaaa 33339
>emb|AL359181.28| Human DNA sequence from clone RP11-392N11 on chromosome 9 Contains the 3' end of the PHF2 gene for PHD finger protein 2 (GRC5, KIAA0662), complete sequence Length = 165415 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 137509 acaaaaatttgggaaataggtaaaa 137485
>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence Length = 191144 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 28926 acaaaaatttgggaaataggtaaaa 28950
>gb|AC008813.6| Homo sapiens chromosome 19 clone CTD-2102P23, complete sequence Length = 162914 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 110749 acaaaaatttgggaaataggtaaaa 110773
>gb|AC148939.8| Pan troglodytes BAC clone CH251-51M11 from chromosome 7, complete sequence Length = 183313 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 70525 acaaaaatttgggaaataggtaaaa 70549
>dbj|AK131448.1| Homo sapiens cDNA FLJ16592 fis, clone TESTI4001984 Length = 3944 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 2648 acaaaaatttgggaaataggtaaaa 2672
>gb|AC114954.2| Homo sapiens chromosome 5 clone RP11-103A10, complete sequence Length = 157980 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 105144 acaaaaatttgggaaataggtaaaa 105120
>gb|AC046144.15| Homo sapiens 3 BAC RP11-628J14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188840 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 tgggaaataggtaaaaacata 154 ||||||||||||||||||||| Sbjct: 143378 tgggaaataggtaaaaacata 143358
>emb|BX511000.12| Zebrafish DNA sequence from clone DKEY-217F4 in linkage group 2, complete sequence Length = 191671 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 gttttataatagggtttaatg 81 ||||||||||||||||||||| Sbjct: 164635 gttttataatagggtttaatg 164615
>gb|AC150749.3| Pan troglodytes BAC clone CH251-553P23 from chromosome 7, complete sequence Length = 237211 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 105323 acaaaaatttgggaaataggtaaaa 105299
>emb|BX546492.4| Human DNA sequence from clone RP11-441E2 on chromosome 22, complete sequence Length = 165333 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 acaaaaatctgggaaataggtaaaa 149 |||||||| |||||||||||||||| Sbjct: 59282 acaaaaatttgggaaataggtaaaa 59306
>dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15I22 Length = 59648 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 tacacacacaaaaatctggga 138 ||||||||||||||||||||| Sbjct: 6042 tacacacacaaaaatctggga 6022
>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence Length = 205289 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 acattttacatgaggagtac 120 |||||||||||||||||||| Sbjct: 86957 acattttacatgaggagtac 86976
>gb|AC139171.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0024B09, complete sequence Length = 132563 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ttattccatcctttgcatcc 38 |||||||||||||||||||| Sbjct: 118263 ttattccatcctttgcatcc 118244
>gb|AC135596.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032D10 map E20933S, complete sequence Length = 146118 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ttattccatcctttgcatcc 38 |||||||||||||||||||| Sbjct: 2651 ttattccatcctttgcatcc 2632
>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence Length = 210819 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 caaaaatctgggaaataggtaaaa 149 ||||||||||||||| |||||||| Sbjct: 28379 caaaaatctgggaaagaggtaaaa 28402
>gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, complete sequence Length = 217989 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 caaaaatctgggaaataggtaaaa 149 ||||||||||||||| |||||||| Sbjct: 10578 caaaaatctgggaaagaggtaaaa 10555
>emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on chromosome 10 Contains part of the CACNB2 gene for calcium channel voltage-dependent beta 2 subunit and a novel gene, complete sequence Length = 177656 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 130 aatctgggaaataggtaaaaacataaac 157 ||||||||||||||||| ||||||||| Sbjct: 108527 aatctgggaaataggtattaacataaac 108500
>gb|AF203743.1| Eonycteris spelaea 16S ribosomal RNA gene, complete sequence; mitochondrial gene for mitochondrial product Length = 1572 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 catgtagtcgttgagcttga 312 |||||||||||||||||||| Sbjct: 554 catgtagtcgttgagcttga 535
>emb|AL929495.21| Zebrafish DNA sequence from clone CH211-136M16 in linkage group 12, complete sequence Length = 157568 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 119 acacacacaaaaatctgggaaataggtaaaaa 150 ||||||||||||| |||| ||||| ||||||| Sbjct: 23475 acacacacaaaaaactggaaaatacgtaaaaa 23444
>gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, complete sequence Length = 206693 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gaggagtacacacacaaaaa 131 |||||||||||||||||||| Sbjct: 77623 gaggagtacacacacaaaaa 77642
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ttattccatcctttgcatcc 38 |||||||||||||||||||| Sbjct: 10378652 ttattccatcctttgcatcc 10378633
>gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, complete sequence Length = 213942 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 107 tacatgaggagtacacacacaaaa 130 ||||||| |||||||||||||||| Sbjct: 175815 tacatgaagagtacacacacaaaa 175792
>emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, locus ECVHL88 Length = 595 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 tacatgaggagtacacacac 126 |||||||||||||||||||| Sbjct: 317 tacatgaggagtacacacac 298
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ttattccatcctttgcatcc 38 |||||||||||||||||||| Sbjct: 10450349 ttattccatcctttgcatcc 10450330
>emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chromosome X, complete sequence Length = 148507 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 agtgtcatggtatttttcca 294 |||||||||||||||||||| Sbjct: 139391 agtgtcatggtatttttcca 139410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,450,513 Number of Sequences: 3902068 Number of extensions: 3450513 Number of successful extensions: 66469 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66391 Number of HSP's gapped (non-prelim): 78 length of query: 354 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 332 effective length of database: 17,147,199,772 effective search space: 5692870324304 effective search space used: 5692870324304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)