>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA|
           N-glycosidase)
          Length = 560

 Score =  109 bits (272), Expect = 2e-24
 Identities = 56/78 (71%), Positives = 58/78 (74%)
 Frame = -1

Query: 381 GVHVRPGEPVXXXXXXXXXXXXXXLTIELDLRRGGSGDEIVRGELEFKTAIDGLHTERLV 202
           GV VRPGE V              LTIELD+R GGSGDEIVRGELEFKTAIDGLHT RLV
Sbjct: 483 GVRVRPGELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAIDGLHTGRLV 542

Query: 201 GVNGAEFEVTISWSDYPW 148
           GVN AEFEVTI WS+YPW
Sbjct: 543 GVNDAEFEVTILWSEYPW 560

>NGN3_MOUSE (P70661) Neurogenin 3 (Atonal protein homolog 5) (Helix-loop-helix|
           protein mATH-4B) (MATH4B)
          Length = 214

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 146 YQG*SDHEIVTSNSAPLTPT 205
           + G SDHE+++SNS P +PT
Sbjct: 21  FPGASDHEVLSSNSTPPSPT 40

>KRE2_CANAL (Q00310) Glycolipid 2-alpha-mannosyltransferase (EC 2.4.1.131)|
           (Alpha-1,2-mannosyltransferase)
          Length = 431

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 386 SRECTCDPGSRFRWRG 339
           +R C CDP   F WRG
Sbjct: 392 ARNCNCDPNKDFTWRG 407

>MEF2D_HUMAN (Q14814) Myocyte-specific enhancer factor 2D|
          Length = 521

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 86  LVRSSIVFVVDSSPLVHMDVYQG*SDHEIVTSNSAPLTPTR-RSVCRPSMAVLNSSSP 256
           LV  S+  ++  SPL H+      + H  ++  S P++P+R RS   P  AV  ++ P
Sbjct: 407 LVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARP 464

>NUP53_HUMAN (Q8NFH5) Nucleoporin NUP53 (Nuclear pore complex protein Nup53)|
           (Nucleoporin Nup35) (35 kDa nucleoporin) (Mitotic
           phosphoprotein 44) (MP-44)
          Length = 326

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 188 APLTPTRRSVCRPSMAVLNSSSPL 259
           AP+TP  RS+  PS+ V+   SPL
Sbjct: 45  APVTPQPRSISGPSVGVMEMRSPL 68

>MEF2D_MOUSE (Q63943) Myocyte-specific enhancer factor 2D|
          Length = 514

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 86  LVRSSIVFVVDSSPLVHMDVYQG*SDHEIVTSNSAPLTPTR-RSVCRPSMAVLNSSSP 256
           LV  S+  ++  SPL H+      + H  ++  S P++P+R RS   P  AV  ++ P
Sbjct: 400 LVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARP 457

>NUP53_RAT (Q68FY1) Nucleoporin NUP53 (Nuclear pore complex protein Nup53)|
           (Nucleoporin Nup35) (35 kDa nucleoporin)
          Length = 325

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 188 APLTPTRRSVCRPSMAVLNSSSPL 259
           AP+TP  RS+  PS+ V+   SPL
Sbjct: 45  APVTPQPRSISGPSVGVMEMRSPL 68

>NUP53_MOUSE (Q8R4R6) Nucleoporin NUP53 (Nuclear pore complex protein Nup53)|
           (Nucleoporin Nup35) (35 kDa nucleoporin) (Mitotic
           phosphoprotein 44) (MP-44)
          Length = 325

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 188 APLTPTRRSVCRPSMAVLNSSSPL 259
           AP+TP  RS+  PS+ V+   SPL
Sbjct: 45  APVTPQPRSISGPSVGVMEMRSPL 68

>MTLD_BUCAP (Q8K912) Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)|
          Length = 388

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
 Frame = +1

Query: 139 GCLPRIVRP*DCHLEFSTIDTN--------KTFRMQAVDGSFELKLASNNFISGSAATKV 294
           G + R++   D +L FS +D N        K ++++ +D SFE  +  NN  + ++    
Sbjct: 14  GFIARVLLKSDFNLIFSDVDQNIINAINNYKKYKIKLIDNSFEKIININNISAINSYDPN 73

Query: 295 KLNRQRHV 318
            LN   HV
Sbjct: 74  VLNVISHV 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,160,124
Number of Sequences: 219361
Number of extensions: 964578
Number of successful extensions: 2426
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2426
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)