ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart59b05 |
|---|---|
| Clone Library Name | barley_pub |
>MIOX4_ARATH (Q8H1S0) Inositol oxygenase 4 (EC 1.13.99.1) (Myo-inositol| oxygenase 4) (AtMIOX4) Length = 317 Score = 102 bits (255), Expect = 2e-22 Identities = 45/51 (88%), Positives = 48/51 (94%) Frame = -3 Query: 389 MNEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 MNEEDKENLKWLHVFNKYDLYSKS V +DVEKVKPYYMSLI+KYFPE L+W Sbjct: 267 MNEEDKENLKWLHVFNKYDLYSKSKVHVDVEKVKPYYMSLIKKYFPENLRW 317
>MIOX5_ARATH (Q9FJU4) Inositol oxygenase 5 (EC 1.13.99.1) (Myo-inositol| oxygenase 5) (AtMIOX5) Length = 314 Score = 100 bits (250), Expect = 6e-22 Identities = 44/51 (86%), Positives = 48/51 (94%) Frame = -3 Query: 389 MNEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 MNEEDKENLKWLHVFNKYDLYSKS V ++VEKVKPYYMSLI+KYFPE L+W Sbjct: 264 MNEEDKENLKWLHVFNKYDLYSKSKVHVNVEKVKPYYMSLIKKYFPENLRW 314
>MIOX_ORYSA (Q5Z8T3) Probable inositol oxygenase (EC 1.13.99.1) (Myo-inositol| oxygenase) Length = 308 Score = 100 bits (248), Expect = 1e-21 Identities = 45/51 (88%), Positives = 48/51 (94%) Frame = -3 Query: 389 MNEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 MN+EDKENLKWL VFNKYDLYSKS+ RIDVEKVKPYYMSLIEKYFP KL+W Sbjct: 258 MNDEDKENLKWLRVFNKYDLYSKSNERIDVEKVKPYYMSLIEKYFPAKLRW 308
>MIOX2_ARATH (O82200) Inositol oxygenase 2 (EC 1.13.99.1) (Myo-inositol| oxygenase 2) (AtMIOX2) Length = 317 Score = 94.0 bits (232), Expect = 8e-20 Identities = 40/51 (78%), Positives = 47/51 (92%) Frame = -3 Query: 389 MNEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 MN+ED+++LKWLHVFNKYDLYSKS V +DVE+VKPYY+SLI KYFP KLKW Sbjct: 267 MNDEDRDDLKWLHVFNKYDLYSKSKVLVDVEQVKPYYISLINKYFPAKLKW 317
>MIOX1_ARATH (Q8L799) Inositol oxygenase 1 (EC 1.13.99.1) (Myo-inositol| oxygenase 1) (AtMIOX1) Length = 311 Score = 91.7 bits (226), Expect = 4e-19 Identities = 39/51 (76%), Positives = 45/51 (88%) Frame = -3 Query: 389 MNEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 MN ED+EN+KWL VFNKYDLYSKS VR++VE+VKPYY+SL KYFP KLKW Sbjct: 261 MNNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSLTNKYFPSKLKW 311
>MIOX_BRARE (Q4V8T0) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| Length = 278 Score = 65.9 bits (159), Expect = 2e-11 Identities = 28/50 (56%), Positives = 39/50 (78%) Frame = -3 Query: 386 NEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 NE+D++ L W+ FNK+DLY+KS+ DVE++KPYY SLI+KY P L+W Sbjct: 229 NEKDQQMLPWVKEFNKFDLYTKSTELPDVERLKPYYQSLIDKYCPGVLQW 278
>MIOX_PIG (Q8WN98) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| (Aldehyde reductase-like 6) Length = 282 Score = 58.2 bits (139), Expect = 5e-09 Identities = 25/50 (50%), Positives = 34/50 (68%) Frame = -3 Query: 386 NEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 NE+D L W+ FNK+DLY+K S DV++++PYY LI+KY P L W Sbjct: 233 NEQDLAMLPWVQEFNKFDLYTKGSDMPDVDELRPYYQGLIDKYCPGVLCW 282
>MIOX_MOUSE (Q9QXN5) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| (Aldehyde reductase-like 6) (Renal-specific oxidoreductase) Length = 285 Score = 55.8 bits (133), Expect = 2e-08 Identities = 23/50 (46%), Positives = 33/50 (66%) Frame = -3 Query: 386 NEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 +++D + L W+ FNK+DLY+K DVE ++PYY LI+KY P L W Sbjct: 236 SQQDLDMLPWVQEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 285
>MIOX_PONPY (Q5REY9) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| Length = 285 Score = 54.7 bits (130), Expect = 5e-08 Identities = 23/50 (46%), Positives = 33/50 (66%) Frame = -3 Query: 386 NEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 +++D L W+ FNK+DLY+K DV+K++PYY LI+KY P L W Sbjct: 236 SQQDLAMLPWVQEFNKFDLYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW 285
>MIOX_HUMAN (Q9UGB7) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| (Aldehyde reductase-like 6) (Renal-specific oxidoreductase) (Kidney-specific protein 32) Length = 285 Score = 54.7 bits (130), Expect = 5e-08 Identities = 23/50 (46%), Positives = 33/50 (66%) Frame = -3 Query: 386 NEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 +++D L W+ FNK+DLY+K DV+K++PYY LI+KY P L W Sbjct: 236 SQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW 285
>MIOX_RAT (Q9QXN4) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| (Aldehyde reductase-like 6) (Renal-specific oxidoreductase) (Kidney-specific protein 32) Length = 285 Score = 52.0 bits (123), Expect = 3e-07 Identities = 21/50 (42%), Positives = 33/50 (66%) Frame = -3 Query: 386 NEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 237 +++D + L W+ FNK+DLY+K +V+ ++PYY LI+KY P L W Sbjct: 236 SQQDLDMLPWVQEFNKFDLYTKCPDLPEVKSLRPYYQGLIDKYCPGILSW 285
>RIN2_HUMAN (Q8WYP3) Ras and Rab interactor 2 (Ras interaction/interference| protein 2) (Ras inhibitor JC265) (Ras association domain family 4) Length = 895 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Frame = -3 Query: 374 KENLKWLHVFNKYDL--YSKSSVRIDVEKVKPYYMSLIEKYFPEK 246 KENL+ + N +L ++ + +DVEK+K +M++ + Y PEK Sbjct: 625 KENLQLVRQRNPQELGVFAPTPDFVDVEKIKVKFMTMQKMYSPEK 669
>SPB1_CRYNE (Q5KM86) AdoMet-dependent rRNA methyltransferase SPB1 (EC 2.1.1.-)| (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) Length = 908 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -3 Query: 362 KWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPE 249 K +H+ KYDL SK+ ID+ ++ + EKY P+ Sbjct: 32 KLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKYMPK 69
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +3 Query: 114 VTIHDSLE---QSLFLLFSMASGSWNNNTIICCLGSVPC 221 +T H++ Q+L LLF A+G +N ++ CL PC Sbjct: 1684 ITEHNNFRTFFQALMLLFRSATGEAWHNIMLSCLSGKPC 1722
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +3 Query: 114 VTIHDSLE---QSLFLLFSMASGSWNNNTIICCLGSVPC 221 +T H++ Q+L LLF A+G +N ++ CL PC Sbjct: 1636 ITEHNNFRTFFQALMLLFRSATGEAWHNIMLSCLSGKPC 1674
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +3 Query: 114 VTIHDSLE---QSLFLLFSMASGSWNNNTIICCLGSVPC 221 +T H++ Q+L LLF A+G +N ++ CL PC Sbjct: 1733 ITEHNNFRTFFQALMLLFRSATGEAWHNIMLSCLSGKPC 1771
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +3 Query: 114 VTIHDSLE---QSLFLLFSMASGSWNNNTIICCLGSVPC 221 +T H++ Q+L LLF A+G +N ++ CL PC Sbjct: 1742 ITEHNNFRTFFQALMLLFRSATGEAWHNIMLSCLSGKPC 1780
>MTM2_METJA (Q58843) Modification methylase MjaII (EC 2.1.1.113) (N-4| cytosine-specific methyltransferase MjaII) (M.MjaII) Length = 530 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = -3 Query: 383 EEDKENLKWLHVFNKYDLYS-KSSVRIDVEKVKPYYMSLIEKYFPEKLKWXXXXXXXXXX 207 E + N+ +L + + + Y K+ V +D+++V+ YY L +F ++ +W Sbjct: 32 EIKEHNISYLVQYGRVNKYKIKNRVYVDIDEVENYYKKL---FFEKRKEWEEKLGFKLDW 88 Query: 206 XXTYDSIIIPASTRH 162 +D + T+H Sbjct: 89 DLAFDLLSEKERTKH 103
>Y3407_METJA (Q60306) Hypothetical protein MJECS07| Length = 441 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Frame = -3 Query: 374 KENLKWLHVFNKY--DLYSKSSVRID-----VEKVKPYYMSLIEKYFPEKL 243 KEN+ F+ Y D+ K+ + I VEK KP Y+ ++ YF KL Sbjct: 211 KENMTVTAPFSLYYADIEGKTPISIPFPINKVEKFKPIYLQNVKPYFIRKL 261
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 692 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = +2 Query: 71 TGVDTTSNAHSTRMSDNTRQLGTISFPSVFHGEWKLE**YYHMLFGFRSLP 223 + +D S + R+ +NT+ L S P H EW + + FG + P Sbjct: 294 SSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNV------LSFGLKQAP 338
>SECY_PEA (Q9XQU4) Preprotein translocase secY subunit, chloroplast precursor| (CpSecY) Length = 527 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +3 Query: 135 EQSLFLLFSMASGSWNNNTIICCLGSVPCLGASSPFQLLREV 260 + SL SG IC LG VP + A FQLL +V Sbjct: 152 QNSLLTTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQV 193
>BGLA_THEMA (Q08638) Beta-glucosidase A (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 446 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = -3 Query: 383 EEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKYFPEKLK 240 EED ++++H FN Y L+ R D ++ + +Y PE K Sbjct: 233 EEDIRAVRFMHQFNNYPLFLNPIYRGDYPEL---VLEFAREYLPENYK 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,134,575 Number of Sequences: 219361 Number of extensions: 782476 Number of successful extensions: 2200 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2200 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
