ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59b04 |
|---|---|
| Clone Library Name | barley_pub |
>FOX2_NEUCR (Q01373) Peroxisomal hydratase-dehydrogenase-epimerase (HDE)| (Multifunctional beta-oxidation protein) (MFP) [Includes: 2-enoyl-CoA hydratase (EC 4.2.1.-); D-3-hydroxyacyl CoA dehydrogenase (EC 1.1.1.-)] Length = 894 Score = 45.1 bits (105), Expect = 5e-05 Identities = 19/34 (55%), Positives = 25/34 (73%) Frame = -3 Query: 331 VYPGETLVTEMWVDGQRVQYQTKAKERDRAVLSG 230 V PG+TLVTEMW +G +V +QTK KE + +SG Sbjct: 855 VNPGQTLVTEMWKEGNKVVFQTKVKETGKLAISG 888
>DHB4_RAT (P97852) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5-b Length = 734 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = -3 Query: 331 VYPGETLVTEMWVDGQRVQYQTKAKERDRAVLS 233 VYPG+TL TEMW +G R+ +QTK +E V+S Sbjct: 565 VYPGQTLQTEMWKEGNRIHFQTKVQETGDIVIS 597
>DHB4_HUMAN (P51659) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5 Length = 735 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = -3 Query: 331 VYPGETLVTEMWVDGQRVQYQTKAKERDRAVLS 233 VYPG+TL TEMW +G R+ +QTK +E V+S Sbjct: 566 VYPGQTLQTEMWKEGNRIHFQTKVQETGDIVIS 598
>DHB4_MOUSE (P51660) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5 Length = 734 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/33 (54%), Positives = 23/33 (69%) Frame = -3 Query: 331 VYPGETLVTEMWVDGQRVQYQTKAKERDRAVLS 233 VYPG+TL TEMW +G R+ +QTK E V+S Sbjct: 565 VYPGQTLQTEMWKEGNRIHFQTKVHETGDVVIS 597
>SPY1_HUMAN (O43609) Sprouty homolog 1 (Spry-1)| Length = 319 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/51 (27%), Positives = 22/51 (43%) Frame = -1 Query: 303 RCGSMARGCSTRPRRKSATAPCSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 +CG G T PR + C+ CS + + C C+++ I CS Sbjct: 183 QCGKCKCGECTAPRTLPSCLACNRQCLCSAESMVEYGTCMCLVKGIFYHCS 233
>SPY1_MOUSE (Q9QXV9) Sprouty homolog 1 (Spry-1)| Length = 313 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/51 (27%), Positives = 21/51 (41%) Frame = -1 Query: 303 RCGSMARGCSTRPRRKSATAPCSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 +CG G T PR + C CS + + C C+++ I CS Sbjct: 177 QCGKCKCGECTAPRALPSCLACDRQCLCSAESMVEYGTCMCLVKGIFYHCS 227
>CELR3_RAT (O88278) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Multiple epidermal growth factor-like domains 2) Length = 3313 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 7/63 (11%) Frame = -1 Query: 318 KRWSPRCGSMARGCST-----RPRRKSATAPCS--PDTCCSNNTSPHHCKCRCVIRTIGE 160 K + P C + C RPR + PC P S + +PH +C C +G Sbjct: 2037 KGFDPNCNKTSGQCHCKEFHYRPRGSDSCLPCDCYPVGSTSRSCAPHSGQCPCRPGALGR 2096 Query: 159 ICS 151 C+ Sbjct: 2097 QCN 2099
>DLL4_MOUSE (Q9JI71) Delta-like protein 4 precursor (Drosophila Delta homolog| 4) Length = 686 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Frame = -1 Query: 297 GSMARGCSTRPRRKS-ATAPCSPDTCCSNNTSPHHCKCRCVIRTIGEICSY 148 G R C R + A+ PC C SP++ C C +G C + Sbjct: 470 GFSGRRCEVRITHDACASGPCFNGATCYTGLSPNNFVCNCPYGFVGSRCEF 520
>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) (M-Delta-3) Length = 592 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/51 (27%), Positives = 21/51 (41%) Frame = -1 Query: 303 RCGSMARGCSTRPRRKSATAPCSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 RCG R C+ P A + C P + +CRC+ G +C+ Sbjct: 197 RCGPGLRPCTPFPDECEAPSVCRPGCSPEHGYCEEPDECRCLEGWTGPLCT 247
>SLP2_DROME (P32031) Fork head domain transcription factor slp2 (Sloppy paired| locus protein 2) Length = 445 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 285 RGCSTRPRRKSATAPCSPDTCCSNNTSP 202 R S PR S+T+ CS ++CC N P Sbjct: 362 RPSSHHPRAVSSTSDCSTNSCCINMRQP 389
>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein| 5.9) (Ultrahigh sulfur keratin-associated protein 5.9) (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra high-sulfur matrix protein A) (UHS keratin A) (UHS KerA) Length = 169 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Frame = -1 Query: 330 STPAKRWSPRCGSMARGC-STRPRRKSATAPCSPDTCCSNNTSPHHCKCRC 181 S+ KR CG GC S + S PC CCS+ C+C C Sbjct: 55 SSCGKRGCGSCGGSKGGCGSCGCSQCSCCKPC----CCSSGCGSSCCQCSC 101
>LAMB2_MOUSE (Q61292) Laminin beta-2 chain precursor (S-laminin) (S-LAM)| Length = 1799 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -1 Query: 240 CSPDTCCSNNTSPHHCKCRCVIRTIGEIC 154 C P S+ SPH +CRC +G C Sbjct: 786 CDPQGSLSSECSPHGGQCRCKPGVVGRRC 814
>FX4L4_HUMAN (Q8WXT5) Forkhead box protein D4-like 4 (Forkhead box protein D4B)| (Myeloid factor-gamma) Length = 416 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = -1 Query: 267 PRRKSATAPCS--PDTCCSNNTSPHHCKCRCVIRTIGEICS 151 PR + ATA CS CC P CKC + +G+ CS Sbjct: 346 PRPRGATATCSSDHQACCIPKPLPLCCKCPPPL-LLGQFCS 385
>EMR2_HUMAN (Q9UHX3) EGF-like module-containing mucin-like hormone| receptor-like 2 precursor (EGF-like module EMR2) (CD312 antigen) Length = 823 Score = 28.5 bits (62), Expect = 4.4 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = -1 Query: 255 SATAPCSPDTCCSNNTSPHHCKCR 184 S PC T C NN + C+CR Sbjct: 169 SGQNPCHSSTHCLNNVGSYQCRCR 192
>CD97_HUMAN (P48960) CD97 antigen precursor (Leukocyte antigen CD97)| Length = 835 Score = 28.5 bits (62), Expect = 4.4 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = -1 Query: 255 SATAPCSPDTCCSNNTSPHHCKCR 184 S PC T C NN + C+CR Sbjct: 166 SGQNPCHSSTHCLNNVGSYQCRCR 189
>FBP1_DROME (Q04691) Fat-body protein 1 precursor (P1 protein)| Length = 1029 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = -3 Query: 304 EMWVDGQRVQYQTKAKERD 248 E WV QRVQYQ +ERD Sbjct: 296 EQWVGRQRVQYQDNNQERD 314
>ARVC_HUMAN (O00192) Armadillo repeat protein deleted in velo-cardio-facial| syndrome Length = 962 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = -1 Query: 324 PAKRWSPRCGSMARGCSTRPRRKSATAPCSPDTC 223 P R SP GS++RG RP R P D C Sbjct: 193 PEPRDSPSYGSLSRGLGMRPPRAGPLGPGPGDGC 226
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 7/63 (11%) Frame = -1 Query: 318 KRWSPRCGSMARGCST-----RPRRKSATAPCS--PDTCCSNNTSPHHCKCRCVIRTIGE 160 K + P C C RPR + PC P S + +PH +C C +G Sbjct: 2046 KGFDPNCNKTNGQCHCKEFHYRPRGSDSCLPCDCYPVGSTSRSCAPHSGQCPCRPGALGR 2105 Query: 159 ICS 151 C+ Sbjct: 2106 QCN 2108
>YKPC_SCHPO (Q9HDZ2) Hypothetical protein C589.12 in chromosome I| Length = 971 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3 Query: 166 W*DLFLLGAMISC*PWWSGKRPVARCKLCQDMASVVQMIYS 44 W D+F++G +IS PW+ V++C MAS ++ I S Sbjct: 129 WHDIFMIGYLISNAPWFI---LVSKCSPVNSMASRIRNIGS 166
>ZIPA_SALTY (P0A2N6) Cell division protein zipA homolog| Length = 328 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +2 Query: 203 GDV-LFEQHVSGEHGAVALFRLGLVLHPLAIDPHLGDQRFAGV 328 GD+ +F +H+S + ALF L +++P DP + D GV Sbjct: 224 GDMNIFHRHLSPDGSGPALFSLANMVNPGTFDPEMTDFTTPGV 266
>ZIPA_SALTI (P0A2N7) Cell division protein zipA homolog| Length = 328 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +2 Query: 203 GDV-LFEQHVSGEHGAVALFRLGLVLHPLAIDPHLGDQRFAGV 328 GD+ +F +H+S + ALF L +++P DP + D GV Sbjct: 224 GDMNIFHRHLSPDGSGPALFSLANMVNPGTFDPEMTDFTTPGV 266
>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)| Length = 4289 Score = 28.1 bits (61), Expect = 5.7 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 14/64 (21%) Frame = -1 Query: 300 CG--SMARGCSTRPRRKSATAPCSPDTC---CSNNTSPHHC---------KCRCVIRTIG 163 CG S RGCS R R K C P C + P C +C C G Sbjct: 306 CGVRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGTRSCPWDCGEGGRCVDGRCVCWPGYTG 365 Query: 162 EICS 151 E CS Sbjct: 366 EDCS 369
>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL| receptor) (Scavenger receptor class F member 1) Length = 830 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Frame = -1 Query: 297 GSMARGCSTRPRRKSATAPCSPDT----CCSNNTSPHHCKCRCVIRTIGEIC 154 GS C+ R PCSPDT C + C+ C+ T GE C Sbjct: 255 GSHGVQCAHSCGRCKHNEPCSPDTGSCESCEPGWNGTQCQQPCLPGTFGESC 306
>TIE2_HUMAN (Q02763) Angiopoietin-1 receptor precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor TIE-2) (hTIE2) (Tyrosine-protein kinase receptor TEK) (p140 TEK) (Tunica interna endothelial cell kinase) (CD202b antigen) Length = 1124 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/56 (23%), Positives = 18/56 (32%) Frame = -1 Query: 321 AKRWSPRCGSMARGCSTRPRRKSATAPCSPDTCCSNNTSPHHCKCRCVIRTIGEIC 154 A++W P C + C T C C C+ C + T G C Sbjct: 213 AQKWGPECNHLCTACMNNGVCHEDTGEC----ICPPGFMGRTCEKACELHTFGRTC 264
>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| Length = 3301 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 7/63 (11%) Frame = -1 Query: 318 KRWSPRCGSMARGCST-----RPRRKSATAPCS--PDTCCSNNTSPHHCKCRCVIRTIGE 160 K + P C C RPR + PC P S + +PH +C C +G Sbjct: 2035 KGFDPNCNKTNGQCHCKEFHYRPRGSDSCLPCDCYPVGSTSRSCAPHSGQCPCRPGALGR 2094 Query: 159 ICS 151 C+ Sbjct: 2095 QCN 2097
>K1H2_HUMAN (Q14532) Keratin, type I cuticular Ha2 (Hair keratin, type I Ha2)| Length = 448 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 243 PCSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 PCS +C + SP + CV RT+G CS Sbjct: 411 PCSTPSCTTCVPSPCVTRTVCVPRTVGMPCS 441
>FOX2_YEAST (Q02207) Peroxisomal hydratase-dehydrogenase-epimerase (HDE)| (Multifunctional beta-oxidation protein) (MFP) [Includes: 2-enoyl-CoA hydratase (EC 4.2.1.-); D-3-hydroxyacyl CoA dehydrogenase (EC 1.1.1.-)] Length = 900 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 331 VYPGETLVTEMWVDGQRVQYQTKAKERDRAVLSGYVLLKQHIPSSL 194 V+PG+TL + W G V +QT R+ VL + S L Sbjct: 855 VFPGDTLKVKAWKQGSVVVFQTIDTTRNVIVLDNAAVKLSQAKSKL 900
>EMR3_HUMAN (Q9BY15) EGF-like module-containing mucin-like hormone| receptor-like 3 precursor (EGF-like module-containing mucin-like receptor EMR3) Length = 652 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 264 RRKSATAPCSPDTCCSNNTSPHHCKC 187 + K++ A C P+ C NNT HC C Sbjct: 23 KTKTSCAKCPPNASCVNNT---HCTC 45
>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor| Length = 297 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%) Frame = -1 Query: 306 PRCGSMARGCSTRPRRKSATAP---CSPDTCCSNNTSPHHCK 190 PRC + C T P R T P +P TC T P CK Sbjct: 43 PRCETEPPRCETEPPRCETTTPKCETTPPTC---RTEPPTCK 81
>SPIKE_CVBV (P25194) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 240 CSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 C+PD S +T P+ C + IGE CS Sbjct: 534 CTPDPITSKSTGPYKCPQTKYLVGIGEHCS 563
>SPIKE_CVBQ (P25193) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 240 CSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 C+PD S +T P+ C + IGE CS Sbjct: 534 CTPDPITSKSTGPYKCPQTKYLVGIGEHCS 563
>SPIKE_CVBM (P15777) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 240 CSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 C+PD S +T P+ C + IGE CS Sbjct: 534 CTPDPITSKSTGPYKCPQTKYLVGIGEHCS 563
>SPIKE_CVBLY (P25192) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 240 CSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 C+PD S +T P+ C + IGE CS Sbjct: 534 CTPDPITSKSTGPYKCPQTKYLVGIGEHCS 563
>SPIKE_CVBL9 (P25191) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 240 CSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 C+PD S +T P+ C + IGE CS Sbjct: 534 CTPDPITSKSTGPYKCPQTKYLVGIGEHCS 563
>SPIKE_CVBF (P25190) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 240 CSPDTCCSNNTSPHHCKCRCVIRTIGEICS 151 C+PD S +T P+ C + IGE CS Sbjct: 534 CTPDPITSKSTGPYKCPQTKYLVGIGEHCS 563
>LAMB2_RAT (P15800) Laminin beta-2 chain precursor (S-laminin) (Laminin chain| B3) Length = 1801 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/29 (34%), Positives = 14/29 (48%) Frame = -1 Query: 240 CSPDTCCSNNTSPHHCKCRCVIRTIGEIC 154 C P S+ +PH +CRC +G C Sbjct: 788 CDPQGSLSSECNPHGGQCRCKPGVVGRRC 816
>LAP4_MOUSE (Q80U72) LAP4 protein (Scribble homolog protein)| Length = 1612 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 Query: 306 PRCGSMARGCSTRPRRKSATAPCSP 232 P GS+ RG S K+ APCSP Sbjct: 1261 PSAGSLQRGPSATTGGKTTEAPCSP 1285 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,339,490 Number of Sequences: 219361 Number of extensions: 917880 Number of successful extensions: 2889 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2561 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2887 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
