>gb|AY104299.1| Zea mays PCO075569 mRNA sequence
          Length = 2139

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 118/145 (81%), Gaps = 3/145 (2%)
 Strand = Plus / Minus

                                                                        
Query: 189  acttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgcgg 248
            ||||||||||| ||||||||||| ||   ||||| ||| ||||| ||||| || || |||
Sbjct: 1955 acttacaatgacgaggggatgtgctg---gagcaacacatatccagagaggacagctcgg 1899

                                                                        
Query: 249  tcgcgctctttcgccttggtctggtactgcaccctctggccatcgacccacatctcggtg 308
            |  ||||| || ||||| || ||||| |||||| ||||||| || | ||||||||| |||
Sbjct: 1898 ttccgctccttggccttcgtttggtagtgcaccttctggccgtcaagccacatctcagtg 1839

                                     
Query: 309  accagcgtttcgccggggtagacgt 333
              || |||||| |||||||||||||
Sbjct: 1838 gacaacgtttccccggggtagacgt 1814

>dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B15, full
            insert sequence
          Length = 1256

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 102/124 (82%), Gaps = 3/124 (2%)
 Strand = Plus / Minus

                                                                        
Query: 187  gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 246
            |||||||||||||||||||||||   |||||||||| ||| ||||| || ||||||||||
Sbjct: 1041 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 985

                                                                        
Query: 247  ggtcgcgctctttcgccttggtctggtactgcaccctctggccatcgacccacatctcgg 306
            ||| ||| || ||  |||| || || ||  ||||||||||||| | || |||||| || |
Sbjct: 984  ggttgcgttccttgacctttgtttgataaagcaccctctggccttggagccacatttcag 925

                
Query: 307  tgac 310
            ||||
Sbjct: 924  tgac 921

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 56/63 (88%), Gaps = 3/63 (4%)
 Strand = Plus / Plus

                                                                            
Query: 187      gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 246
                |||||||||||||||||||||||   |||||||||| ||| ||||| || ||||||||||
Sbjct: 21236823 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 21236879

                   
Query: 247      ggt 249
                |||
Sbjct: 21236880 ggt 21236882

>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone: P0705E11
          Length = 140729

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 56/63 (88%), Gaps = 3/63 (4%)
 Strand = Plus / Plus

                                                                          
Query: 187    gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 246
              |||||||||||||||||||||||   |||||||||| ||| ||||| || ||||||||||
Sbjct: 107580 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 107636

                 
Query: 247    ggt 249
              |||
Sbjct: 107637 ggt 107639

>ref|XM_450198.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 330

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 50/57 (87%), Gaps = 3/57 (5%)
 Strand = Plus / Minus

                                                                    
Query: 193 acaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgcggt 249
           |||||||||||||||||   |||||||||| ||| ||||| || |||||||||||||
Sbjct: 301 acaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgcggt 248

>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 287    gccatcgacccacatctcggtgaccagcgtttcgccggg 325
              ||||||||||||||||||||||  |||||| ||||||||
Sbjct: 297779 gccatcgacccacatctcggtgcgcagcgtatcgccggg 297741

>gb|AC119982.6| Mus musculus chromosome 19, clone RP24-498L9, complete sequence
          Length = 177924

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 72     atatcttggcatagtttacaa 92
              |||||||||||||||||||||
Sbjct: 157927 atatcttggcatagtttacaa 157947

>gb|AY158078.1| Acetobacter aceti ChrA (chrA) gene, complete cds; and unknown genes
          Length = 3298

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   aactgaagcagcaccagaaag 35
            |||||||||||||||||||||
Sbjct: 1117 aactgaagcagcaccagaaag 1097

>gb|AC124973.8| Mus musculus strain C57BL/6J clone rp23-329l13 map 19, complete sequence
          Length = 199006

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     atatcttggcatagtttacaa 92
              |||||||||||||||||||||
Sbjct: 180265 atatcttggcatagtttacaa 180245

>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 293    gacccacatctcggtgaccagcgtttcgccggg 325
              ||||||||||||||||  |||||| ||||||||
Sbjct: 295862 gacccacatctcggtgcgcagcgtatcgccggg 295830

>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 294    acccacatctcggtgaccagcgtttcgccggg 325
              |||||||||||||||  |||||| ||||||||
Sbjct: 930189 acccacatctcggtgcgcagcgtgtcgccggg 930158

>emb|AL590244.5| Human DNA sequence from clone RP11-28H17 on chromosome 6 Contains  the 3'
              end of a novel gene, part of a novel gene,  a novel gene,
              cytochrome P450 pseudogene and the 3' end of the RHAG gene
              for Rhesus blood group-associated glycoprotein (RH50A),
              complete sequence
          Length = 133579

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 197    tgatgaggggatgtgttgtttgag 220
              ||||||||||||||| ||||||||
Sbjct: 114491 tgatgaggggatgtgatgtttgag 114514

>emb|AL021331.1|HS366N23 Human DNA sequence from clone RP3-366N23 on chromosome 6q27 Contains
             the UNC93A gene for unc-93 homolog A (C. elegans), the
             gene for NYD-TSPG protein,  a Mitotic Feedback Control
             Protein MADP2 Homolog LIKE pseudogene and the 3' end  of
             the TCP10 gene for t-complex 10 (mouse), complete sequence
          Length = 98517

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   acggcacttacaatgatgagggga 207
             |||||||||||||| |||||||||
Sbjct: 40880 acggcacttacaatcatgagggga 40903

>gb|AC136443.3| Homo sapiens chromosome 16 clone RP11-719K4, complete sequence
          Length = 193377

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    tctgcacaacacttgccata 74
             ||||||||||||||||||||
Sbjct: 44882 tctgcacaacacttgccata 44901

>dbj|AB047584.1| Vibrio parahaemolyticus rnpB, ORF1, ORF2 genes, partial cds
          Length = 1995

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 17   ctgaagcagcaccagaaagtttta 40
            |||||||||||||| |||||||||
Sbjct: 1619 ctgaagcagcaccaaaaagtttta 1642

>gb|AC020757.5| Homo sapiens chromosome 16 clone CTD-2270E3, complete sequence
          Length = 159153

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tctgcacaacacttgccata 74
              ||||||||||||||||||||
Sbjct: 144235 tctgcacaacacttgccata 144216

>gb|AC138932.4| Homo sapiens chromosome 16 clone RP11-680G24, complete sequence
          Length = 180798

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     tctgcacaacacttgccata 74
              ||||||||||||||||||||
Sbjct: 179369 tctgcacaacacttgccata 179388

>gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13N6 genomic sequence, complete
             sequence
          Length = 90698

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   caatagtacgtatgacacaa 184
             ||||||||||||||||||||
Sbjct: 18466 caatagtacgtatgacacaa 18485

>gb|AC136427.3| Homo sapiens chromosome 16 clone RP11-103G5, complete sequence
          Length = 145971

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     tctgcacaacacttgccata 74
              ||||||||||||||||||||
Sbjct: 144542 tctgcacaacacttgccata 144561

>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     ctgaagcagcaccagaaagtttta 40
              |||||||||||||| |||||||||
Sbjct: 453173 ctgaagcagcaccaaaaagtttta 453196

>gb|AC139236.1| Homo sapiens chromosome 16 clone RP11-1314D11, complete sequence
          Length = 199021

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tctgcacaacacttgccata 74
              ||||||||||||||||||||
Sbjct: 166997 tctgcacaacacttgccata 166978


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,105,866
Number of Sequences: 3902068
Number of extensions: 2105866
Number of successful extensions: 33694
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33638
Number of HSP's gapped (non-prelim): 50
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)