ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCNA_DROME (P35500) Sodium channel protein para (Protein paralytic) 28 5.4
2LEUD_CLOAB (Q97EE1) 3-isopropylmalate dehydratase small subunit ... 28 7.0

>SCNA_DROME (P35500) Sodium channel protein para (Protein paralytic)|
          Length = 2131

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 162 IIGKTDHICIYDCCFTFLPFSLW 94
           I+   D  C++DCC+ +L F  W
Sbjct: 788 ILKGIDVFCVWDCCWVWLKFQEW 810



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>LEUD_CLOAB (Q97EE1) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 163

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 130 VNTDVIRFANNVDTDVI 180
           VN DV+++ +N+DTDVI
Sbjct: 3   VNGDVLKYGDNIDTDVI 19


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,722,140
Number of Sequences: 219361
Number of extensions: 1056467
Number of successful extensions: 2263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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