ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC008255.9| Drosophila melanogaster clone BACR48D17, complete... 42 0.72
2gb|BC012434.1| Mus musculus cDNA clone IMAGE:3711007, **** WARNI... 42 0.72
3gb|AE014180.1| Mus musculus piebald deletion region section 8 of... 42 0.72
4dbj|AK084288.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 42 0.72
5gb|AC018488.7|AC018488 Drosophila melanogaster, chromosome X, re... 42 0.72
6gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 ... 42 0.72
7gb|AC141878.4| Mus musculus BAC clone RP24-257N14 from 14, compl... 42 0.72
8gb|AC161281.2| Pan troglodytes BAC clone CH251-392N12 from chrom... 40 2.8
9gb|AC079760.6| Homo sapiens BAC clone RP11-142A5 from 7, complet... 40 2.8
10emb|AL391260.13| Human DNA sequence from clone RP11-328B14 on ch... 40 2.8
11emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 2.8
12emb|CR378667.1| Photobacterium profundum SS9; segment 5/12 40 2.8
13gb|AF409100.1| Photobacterium profundum strain SS9 methyl-accept... 40 2.8
14gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, comple... 40 2.8
15gb|AC154628.2| Mus musculus BAC clone RP23-313L7 from 13, comple... 40 2.8

>gb|AC008255.9| Drosophila melanogaster clone BACR48D17, complete sequence
          Length = 183316

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 75     ccctccattccacacaactgg 95
              |||||||||||||||||||||
Sbjct: 160499 ccctccattccacacaactgg 160479



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>gb|BC012434.1| Mus musculus cDNA clone IMAGE:3711007, **** WARNING: chimeric clone
           ****
          Length = 3220

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 135 agacaataagacagcagctctgatg 159
           ||||||||||||||||||| |||||
Sbjct: 523 agacaataagacagcagctttgatg 499



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>gb|AE014180.1| Mus musculus piebald deletion region section 8 of 11 of the complete
              sequence
          Length = 400029

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 135    agacaataagacagcagctctgatg 159
              ||||||||||||||||||| |||||
Sbjct: 223392 agacaataagacagcagctttgatg 223368



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>dbj|AK084288.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230018E09 product:unclassifiable, full
            insert sequence
          Length = 3068

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 135  agacaataagacagcagctctgatg 159
            ||||||||||||||||||| |||||
Sbjct: 1324 agacaataagacagcagctttgatg 1300



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>gb|AC018488.7|AC018488 Drosophila melanogaster, chromosome X, region 13A-13B, BAC clone
              BACR09F03, complete sequence
          Length = 165118

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     ccctccattccacacaactgg 95
              |||||||||||||||||||||
Sbjct: 154487 ccctccattccacacaactgg 154507



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>gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 of 74 of the complete
              sequence
          Length = 341520

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     ccctccattccacacaactgg 95
              |||||||||||||||||||||
Sbjct: 155242 ccctccattccacacaactgg 155262



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>gb|AC141878.4| Mus musculus BAC clone RP24-257N14 from 14, complete sequence
          Length = 192097

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 135   agacaataagacagcagctctgatg 159
             ||||||||||||||||||| |||||
Sbjct: 71749 agacaataagacagcagctttgatg 71725



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>gb|AC161281.2| Pan troglodytes BAC clone CH251-392N12 from chromosome 7, complete
             sequence
          Length = 159549

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   atcaaaaatatacaaggaac 210
             ||||||||||||||||||||
Sbjct: 87540 atcaaaaatatacaaggaac 87559



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>gb|AC079760.6| Homo sapiens BAC clone RP11-142A5 from 7, complete sequence
          Length = 129808

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   atcaaaaatatacaaggaac 210
             ||||||||||||||||||||
Sbjct: 66464 atcaaaaatatacaaggaac 66445



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>emb|AL391260.13| Human DNA sequence from clone RP11-328B14 on chromosome 10, complete
             sequence
          Length = 172771

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   acactcatgtagtctgctca 135
             ||||||||||||||||||||
Sbjct: 12376 acactcatgtagtctgctca 12357



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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 185     tttccgatcaaaaatatacaagga 208
               ||||||||||||||||| ||||||
Sbjct: 1715936 tttccgatcaaaaatattcaagga 1715913



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>emb|CR378667.1| Photobacterium profundum SS9; segment 5/12
          Length = 349080

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    ccgatcaaaaatatacaagg 207
              ||||||||||||||||||||
Sbjct: 235795 ccgatcaaaaatatacaagg 235814



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>gb|AF409100.1| Photobacterium profundum strain SS9 methyl-accepting chemotaxis protein
             gene, partial cds; putative steroid dehydrogenase,
             putative acyl-CoA ligase, putative haloalkane
             dehalogenase, and 3-oxoacyl-acyl carrier protein synthase
             III (fabH) genes, complete cds; eicosapentaenoic fatty
             acid biosynthetic gene cluster pfa, complete sequence;
             alkaline serine protease gene, complete cds;
             formyltetrahydrofolate deformylase (purU) gene, partial
             cds; and unknown genes
          Length = 33099

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   ccgatcaaaaatatacaagg 207
             ||||||||||||||||||||
Sbjct: 31888 ccgatcaaaaatatacaagg 31869



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>gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, complete sequence
          Length = 39786

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   atcaaaaatatacaaggaac 210
             ||||||||||||||||||||
Sbjct: 25492 atcaaaaatatacaaggaac 25473



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>gb|AC154628.2| Mus musculus BAC clone RP23-313L7 from 13, complete sequence
          Length = 212309

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    ggagatgggacactgcaaat 113
             ||||||||||||||||||||
Sbjct: 51869 ggagatgggacactgcaaat 51850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,691,614
Number of Sequences: 3902068
Number of extensions: 1691614
Number of successful extensions: 110522
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110483
Number of HSP's gapped (non-prelim): 39
length of query: 222
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 200
effective length of database: 17,147,199,772
effective search space: 3429439954400
effective search space used: 3429439954400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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