ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X84056.1|HVPAF93 H.vulgare paf93 gene 678 0.0
2gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, c... 337 1e-89
3gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein ... 260 3e-66
4gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence 252 7e-64
5gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (... 252 7e-64
6gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein ... 250 3e-63
7emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin... 206 4e-50
8gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, com... 200 2e-48
9emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chr... 48 0.020
10gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, com... 42 1.2
11gb|DQ015701.1| Ovis aries endothelial nitric oxide synthase mRNA... 42 1.2
12gb|M99057.1|BOVNIOXSY Bovine nitric oxide synthase mRNA, complet... 42 1.2
13gb|M89952.1|BOVECNOS Bos taurus endothelial nitric oxide synthas... 42 1.2
14gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 4.8
15gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosom... 40 4.8
16ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypo... 40 4.8
17gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, com... 40 4.8
18emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 ... 40 4.8
19emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 i... 40 4.8
20dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07,... 40 4.8
21dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, ... 40 4.8
22gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, comple... 40 4.8
23dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.8
24dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 4.8

>emb|X84056.1|HVPAF93 H.vulgare paf93 gene
          Length = 1154

 Score =  678 bits (342), Expect = 0.0
 Identities = 354/358 (98%)
 Strand = Plus / Minus

                                                                        
Query: 5    ggcggaaatctttaatatcaaggcataatgcccagcaataagccaatacacaaagtgccc 64
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1154 ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 1095

                                                                        
Query: 65   gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 1035

                                                                        
Query: 125  cccgtatacccaaactgaacacaagcatccgtcacctaacgggcttcacagaccggacct 184
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1034 cccgtatacccaaactgaacacaagcatccgtcacctaacggacttcacagaccggacct 975

                                                                        
Query: 185  tcaaagacgatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacaca 244
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 974  tcaaagacgatcaatccctccatcttgacacggacttagacgtaaagcaaacacgacaca 915

                                                                        
Query: 245  cgccaacaatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctct 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  cgccaacaatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctct 855

                                                                      
Query: 305  gggcttgtgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  gggcttgtgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 797



to top

>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds
          Length = 2254

 Score =  337 bits (170), Expect = 1e-89
 Identities = 170/170 (100%)
 Strand = Plus / Minus

                                                                        
Query: 193  gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 2187

                                                                        
Query: 253  atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 2127

                                                              
Query: 313  gctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 gctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 2077



to top

>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA,
            complete cds
          Length = 1242

 Score =  260 bits (131), Expect = 3e-66
 Identities = 210/231 (90%), Gaps = 4/231 (1%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 978

                                                                        
Query: 193  gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 251
            |||||| |||||| | ||||||||  |||||| | |||||||||||| ||||||||||||
Sbjct: 977  gatcaacccctcccaccttgacaccaacttaa-cgtaaagcaaacacaacacacgccaac 919

                                                                        
Query: 252  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 311
            |||| ||| |||||||||| | |||||||||| ||||||||||||||||| |||||||||
Sbjct: 918  aattcaatcgaggtccggtcacgagtctcggg-cacggcggcgatcaagcgctgggcttg 860

                                                               
Query: 312  tgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 362
            |||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 859  tgctcgcctgcagcggcggcggccttgtcctcctcccctgtcttgtggtaa 809



 Score =  115 bits (58), Expect = 1e-22
 Identities = 104/116 (89%), Gaps = 5/116 (4%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaatatcaaggcataatgcccagcaataagccaatacacaaagtgcccgta 67
            |||||||||||||||||||||||||||||||||||  | ||||||||| ||| ||||   
Sbjct: 1138 ggaaatctttaatatcaaggcataatgcccagcaaataaccaatacac-aagcgccc--- 1083

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            |||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1082 ataataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1028



to top

>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence
          Length = 1130

 Score =  252 bits (127), Expect = 7e-64
 Identities = 209/231 (90%), Gaps = 4/231 (1%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||| |||
Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccggaccttcaa-gac 951

                                                                        
Query: 193  gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 251
            |||||| |||||| | ||||||||  ||||| || |||||||||||| ||||||||||||
Sbjct: 950  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 891

                                                                        
Query: 252  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 311
            |||| ||| ||| |||||| | |||||||||| |||||||||||| |||| |||||||||
Sbjct: 890  aattcaatcgagctccggtcacgagtctcggg-cacggcggcgattaagcgctgggcttg 832

                                                               
Query: 312  tgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 362
            |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  tgctcgcctgcaggggcggcggccttgtcctcctcccctgtcttgtggtaa 781



 Score =  135 bits (68), Expect = 1e-28
 Identities = 111/123 (90%), Gaps = 8/123 (6%)
 Strand = Plus / Minus

                                                                        
Query: 1    actgggcggaaatctttaatatcaaggcataatgcccagcaataagccaatacacaaagt 60
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1114 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagt 1056

                                                                        
Query: 61   gcccgtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaact 120
            ||||      ||||| ||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct: 1055 gccc------ataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaact 1003

               
Query: 121  gaa 123
            |||
Sbjct: 1002 gaa 1000



to top

>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete
            cds
          Length = 1136

 Score =  252 bits (127), Expect = 7e-64
 Identities = 208/231 (90%), Gaps = 3/231 (1%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| || ||||| |||||||  |||||||||||| ||||||||||||||||||
Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccggaccttcaaagac 979

                                                                        
Query: 193  gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 251
            |||||| |||||| | ||||||||  ||||| || |||||||||||| ||||||||||||
Sbjct: 978  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 919

                                                                        
Query: 252  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 311
            |||| ||| |||||||||| | | |||||||| ||||||||||||||||| |||||||||
Sbjct: 918  aattcaatcgaggtccggtcacgggtctcggg-cacggcggcgatcaagcgctgggcttg 860

                                                               
Query: 312  tgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 362
            |||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 859  tgctcgcctgtagcggcggcggccttgtcctcctcccctgtcttgtggtaa 809



 Score =  113 bits (57), Expect = 4e-22
 Identities = 103/116 (88%), Gaps = 8/116 (6%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaatatcaaggcataatgcccagcaataagccaatacacaaagtgcccgta 67
            |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||   
Sbjct: 1136 ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgccc--- 1081

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
               ||||| ||| ||||||  ||||||||||||||||||||||| |||||||||||
Sbjct: 1080 ---ataagtaaacaaactt-gacaacatccaggacctgactctgaaccaaactgaa 1029



to top

>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA,
            complete cds
          Length = 1181

 Score =  250 bits (126), Expect = 3e-63
 Identities = 200/222 (90%), Gaps = 2/222 (0%)
 Strand = Plus / Minus

                                                                        
Query: 142  aacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatcc 201
            |||| ||||| |||||||  |||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaaccc 979

                                                                        
Query: 202  ctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatg 260
            |||| | ||||||||  ||||| || |||||||||||| |||||||||||||||| ||| 
Sbjct: 978  ctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatc 919

                                                                        
Query: 261  gaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcgcct 320
            |||||||||| | | |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 918  gaggtccggtcacgggtctcggg-cacggcggcgatcaagcgctgggcttgtgctcgcct 860

                                                      
Query: 321  gaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 362
            | || |||||||||||||||||||||||||||||||||||||
Sbjct: 859  gtagcggcggcggccttgtcctcctcccctgtcttgtggtaa 818



 Score =  105 bits (53), Expect = 1e-19
 Identities = 56/57 (98%)
 Strand = Plus / Minus

                                                                     
Query: 1    actgggcggaaatctttaatatcaaggcataatgcccagcaataagccaatacacaa 57
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1145 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaa 1089



to top

>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene)
          Length = 1127

 Score =  206 bits (104), Expect = 4e-50
 Identities = 205/232 (88%), Gaps = 5/232 (2%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 976

                                                                        
Query: 193  gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 251
            |||||| |||| ||| ||||||||  |||| ||| |||||||||||| ||||||||||||
Sbjct: 975  gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 917

                                                                        
Query: 252  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 311
            |||| ||| | |||||||| | ||||||| ||||||||||||| ||||||  |||| |||
Sbjct: 916  aattcaatcggggtccggtcacgagtctc-gggcacggcggcgttcaagcgttgggattg 858

                                                                
Query: 312  tgctcg-cctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 362
            |||||| |||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 857  tgctcgccctgcagcggcggcggacttgtcctcctcccctgtcttgtggtaa 806



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 95/107 (88%), Gaps = 5/107 (4%)
 Strand = Plus / Minus

                                                                        
Query: 17   taatatcaaggcataatgcccagcaataagccaatacacaaagtgcccgtaataataagc 76
            ||||||||||||||||||||||||||  | ||||||||||| | ||||   |||||||| 
Sbjct: 1127 taatatcaaggcataatgcccagcaaataaccaatacacaa-gcgccc---ataataagt 1072

                                                           
Query: 77   aaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1071 aaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1026



to top

>gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, complete cds
          Length = 808

 Score =  200 bits (101), Expect = 2e-48
 Identities = 104/105 (99%)
 Strand = Plus / Minus

                                                                       
Query: 258 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 749

                                                        
Query: 318 cctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaa 362
           |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 748 cctgaaggggcggcggccttgtcctcctcctctgtcttgtggtaa 704



to top

>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete
              sequence
          Length = 205838

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 103    ctgactctggaccaaactgaagcc 126
              ||||||||||||||||||||||||
Sbjct: 138293 ctgactctggaccaaactgaagcc 138316



to top

>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence
          Length = 156547

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 132    acccaaactgaacacaagcat 152
              |||||||||||||||||||||
Sbjct: 134241 acccaaactgaacacaagcat 134261



to top

>gb|DQ015701.1| Ovis aries endothelial nitric oxide synthase mRNA, complete cds
          Length = 4097

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 325  gggcggcggccttgtcctcctcccc 349
            |||||||||||||| ||||||||||
Sbjct: 2195 gggcggcggccttggcctcctcccc 2171



to top

>gb|M99057.1|BOVNIOXSY Bovine nitric oxide synthase mRNA, complete cds
          Length = 4096

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 325  gggcggcggccttgtcctcctcccc 349
            |||||||||||||| ||||||||||
Sbjct: 2196 gggcggcggccttggcctcctcccc 2172



to top

>gb|M89952.1|BOVECNOS Bos taurus endothelial nitric oxide synthase mRNA, complete cds
          Length = 3738

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 325  gggcggcggccttgtcctcctcccc 349
            |||||||||||||| ||||||||||
Sbjct: 2186 gggcggcggccttggcctcctcccc 2162



to top

>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   cggcggccttgtcctcctcc 347
             ||||||||||||||||||||
Sbjct: 72754 cggcggccttgtcctcctcc 72735



to top

>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence
          Length = 221754

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 153660 aataagcaaataaacttaaa 153679



to top

>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0511) partial mRNA
          Length = 5448

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   aaataaacttaaacaacatc 96
            ||||||||||||||||||||
Sbjct: 4865 aaataaacttaaacaacatc 4884



to top

>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence
          Length = 211515

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 65     gtaataataagcaaataaacttaaacaa 92
              |||||||||||||||| || ||||||||
Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841



to top

>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5,
             complete sequence
          Length = 177385

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    taataataagcaaataaacttaaa 89
             |||||||||| |||||||||||||
Sbjct: 63646 taataataagtaaataaacttaaa 63623



to top

>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5,
             complete sequence
          Length = 157791

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    taataataagcaaataaacttaaa 89
             |||||||||| |||||||||||||
Sbjct: 81135 taataataagtaaataaacttaaa 81112



to top

>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete
            sequences
          Length = 181678

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 97   caggacctgactctggaccaaactgaag 124
            |||||| ||||||||||||| |||||||
Sbjct: 3276 caggacttgactctggaccagactgaag 3249



to top

>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete
              sequences
          Length = 155513

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 131204 caggacttgactctggaccagactgaag 131177



to top

>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence
          Length = 176649

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 121495 aataagcaaataaacttaaa 121476



to top

>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 97    caggacctgactctggaccaaactgaag 124
             |||||| ||||||||||||| |||||||
Sbjct: 80688 caggacttgactctggaccagactgaag 80661



to top

>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete
              sequence
          Length = 136804

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 102805 caggacttgactctggaccagactgaag 102778


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,010,350
Number of Sequences: 3902068
Number of extensions: 3010350
Number of successful extensions: 56697
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56638
Number of HSP's gapped (non-prelim): 45
length of query: 362
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 340
effective length of database: 17,147,199,772
effective search space: 5830047922480
effective search space used: 5830047922480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top