ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59a07 |
|---|---|
| Clone Library Name | barley_pub |
>ASNS_ASPOF (P31752) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (AS) Length = 589 Score = 118 bits (295), Expect = 7e-27 Identities = 65/100 (65%), Positives = 74/100 (74%), Gaps = 7/100 (7%) Frame = -1 Query: 426 TKEAYCTG*Y*E-VFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 250 TKEAY E FPQNSA TVPGGPS+ACSTAKA+EWDARWS NLDPSGRAALGVH Sbjct: 491 TKEAYYYRMIFERFFPQNSARFTVPGGPSIACSTAKAIEWDARWSNNLDPSGRAALGVHD 550 Query: 249 SAYEQEHLPATIMAG------TSKKPRMIKVAAPGVAIES 148 SAY+ LP++I AG T+KKPR++ VA PGV I + Sbjct: 551 SAYDPP-LPSSISAGKGAAMITNKKPRIVDVATPGVVIST 589
>ASNS1_PEA (P19251) Asparagine synthetase, nodule [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 585 Score = 105 bits (261), Expect = 6e-23 Identities = 59/95 (62%), Positives = 66/95 (69%), Gaps = 1/95 (1%) Frame = -1 Query: 429 DTKEAYCTG*Y*E-VFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVH 253 +TKEAY E FPQNSA LTVPGGPSVACST KA+EWDA WS NLDPSGRAALGVH Sbjct: 491 NTKEAYYYRMIFERFFPQNSARLTVPGGPSVACSTEKAIEWDASWSNNLDPSGRAALGVH 550 Query: 252 LSAYEQEHLPATIMAGTSKKPRMIKVAAPGVAIES 148 +SAYE + P T K I V+ GVAI++ Sbjct: 551 VSAYEHQINPVTKGVEPEKIIPKIGVSPLGVAIQT 585
>ASNS1_LOTJA (P49092) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 1) Length = 585 Score = 99.8 bits (247), Expect = 2e-21 Identities = 60/96 (62%), Positives = 67/96 (69%), Gaps = 3/96 (3%) Frame = -1 Query: 426 TKEAYCTG*Y*E-VFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 250 TKEAY E FPQNSA LTVPGGP+VACSTAKAVEWDA WS NLDPSGRAALGVHL Sbjct: 491 TKEAYYYRMIFERFFPQNSARLTVPGGPTVACSTAKAVEWDAAWSNNLDPSGRAALGVHL 550 Query: 249 SAYEQEHLPATIMAGTSKKPRMIKVAAP--GVAIES 148 SAY+ + I + ++I + AP GVAI S Sbjct: 551 SAYDDKQ-NNLINNKPVEFEKLIPMEAPSLGVAIHS 585
>ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 583 Score = 98.6 bits (244), Expect = 6e-21 Identities = 56/97 (57%), Positives = 67/97 (69%), Gaps = 3/97 (3%) Frame = -1 Query: 429 DTKEAYCTG*Y*E-VFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVH 253 +TKEAY E FPQNSA LTVPGG +VACSTAKAVEWDA WS N+DPSGRAA+GVH Sbjct: 490 NTKEAYYYRMIFERFFPQNSARLTVPGGATVACSTAKAVEWDASWSNNMDPSGRAAIGVH 549 Query: 252 LSAYEQEHLPATI--MAGTSKKPRMIKVAAPGVAIES 148 LSAY+ +++ TI + P M+ GV I+S Sbjct: 550 LSAYDGKNVALTIPPLKAIDNMPMMM---GQGVVIQS 583
>ASNS2_PEA (P19252) Asparagine synthetase, root [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 582 Score = 97.4 bits (241), Expect = 1e-20 Identities = 51/68 (75%), Positives = 54/68 (79%), Gaps = 1/68 (1%) Frame = -1 Query: 429 DTKEAYCTG*Y*E-VFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVH 253 +TKEAY E FPQNSA LTVPGGP+VACSTAKAVEWDA WS NLDPSGRAALGVH Sbjct: 490 NTKEAYYYRMIFERFFPQNSARLTVPGGPTVACSTAKAVEWDAAWSNNLDPSGRAALGVH 549 Query: 252 LSAYEQEH 229 SAYE + Sbjct: 550 DSAYENHN 557
>ASNS_BRAOL (P49091) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 94.0 bits (232), Expect = 1e-19 Identities = 48/64 (75%), Positives = 52/64 (81%), Gaps = 1/64 (1%) Frame = -1 Query: 426 TKEAYCTG*Y*E-VFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 250 TKEAY E FPQNSA LTVPGG +VACSTAKAVEWDA WS N+DPSGRAA+GVHL Sbjct: 492 TKEAYYYRMIFERFFPQNSARLTVPGGATVACSTAKAVEWDASWSNNMDPSGRAAIGVHL 551 Query: 249 SAYE 238 SAY+ Sbjct: 552 SAYD 555
>ASNS_ORYSA (Q43011) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 590 Score = 93.6 bits (231), Expect = 2e-19 Identities = 48/64 (75%), Positives = 53/64 (82%), Gaps = 1/64 (1%) Frame = -1 Query: 426 TKEAYC-TG*Y*EVFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 250 TKEAY + + FP+N+A LTVPGGPSVACSTAKAVEWDA WS NLDPSGRAALGVH Sbjct: 491 TKEAYYYRTIFEKFFPKNAARLTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHD 550 Query: 249 SAYE 238 +AYE Sbjct: 551 AAYE 554
>ASNS2_LOTJA (P49093) Asparagine synthetase [glutamine-hydrolyzing] 2 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 2) Length = 585 Score = 92.8 bits (229), Expect = 3e-19 Identities = 56/98 (57%), Positives = 68/98 (69%), Gaps = 4/98 (4%) Frame = -1 Query: 429 DTKEAYCTG*Y*E-VFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVH 253 +TKEAY E FPQNSA L+VPGG S+ACST KA+EWDA WS NLDPSGRAALGVH Sbjct: 490 NTKEAYYYRMIFERFFPQNSARLSVPGGASIACSTEKAIEWDAAWSNNLDPSGRAALGVH 549 Query: 252 LSAYEQEHLPATIMAGTSKK---PRMIKVAAPGVAIES 148 SAY+ + L ++ G + P+M +V+ GVAI S Sbjct: 550 DSAYD-DQLNKSVSKGVEPEKIIPKM-EVSPLGVAILS 585
>ASNS_TRIVS (O24661) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 89.0 bits (219), Expect = 4e-18 Identities = 48/72 (66%), Positives = 51/72 (70%) Frame = -1 Query: 387 FPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEHLPATIMA 208 FPQNSA LTVPGGPSVACSTA AV WDA WS NLDPSGRAA GVH AYE H+P Sbjct: 505 FPQNSAKLTVPGGPSVACSTATAVAWDASWSKNLDPSGRAATGVHDLAYE-NHVP----I 559 Query: 207 GTSKKPRMIKVA 172 G K +M V+ Sbjct: 560 GNLKSKKMDSVS 571
>ASNB_ECOLI (P22106) Asparagine synthetase B [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 553 Score = 65.1 bits (157), Expect = 7e-11 Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Frame = -1 Query: 426 TKEAYC-TG*Y*EVFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 250 +KEAY + E+FP SA VPGGPSVACS+AKA+EWD + DPSGR A+GVH Sbjct: 491 SKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGR-AVGVHQ 549 Query: 249 SAYE 238 SAY+ Sbjct: 550 SAYK 553
>ASNS_MAIZE (P49094) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 55.8 bits (133), Expect = 4e-08 Identities = 24/40 (60%), Positives = 30/40 (75%) Frame = -1 Query: 390 VFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGR 271 +FPQ+SA TVP GPS+ACST A+EW +W + DPSGR Sbjct: 504 LFPQDSARETVPWGPSIACSTPAAIEWVEQWKASNDPSGR 543
>GLSA_AGRT5 (Q8UEA1) Glutaminase (EC 3.5.1.2)| Length = 309 Score = 31.2 bits (69), Expect = 1.1 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 8/90 (8%) Frame = +1 Query: 1 RNHPVSDFIRTIETLMHNLHSTLGLHHSN--------GKTRYTLFLIRNGKQDRTPSTLN 156 RN +++F+R+ L H + TLG++ +R LFL G+ + T+ Sbjct: 166 RNFALANFMRSFGNLHHPVEHTLGVYFHQCALSMTCAQLSRAGLFLANRGRNPLSGHTVV 225 Query: 157 CDTRCRNLDHPRLLAGSCHDGCWEMLLLIG 246 D R R ++ L G +DG + +G Sbjct: 226 SDRRARRINALMLTCGH-YDGSGDFAYHVG 254
>TENS1_BOVIN (Q9GLM4) Tensin-1| Length = 1715 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = -3 Query: 394 RGLPPELGNPDSARRAKRRMQHGEGSRVGCSVVGEPGSLRESSTWSPSLGL*AGASPSNH 215 R + P L P S + R++ G+ + P S ++ SPSLG GA SN Sbjct: 1179 RAVNPSLAAPSSPSLSHRQVMGPLGTGFHGNTGSSPQSSAATTPGSPSLGRHPGAQVSNL 1238 Query: 214 HG 209 HG Sbjct: 1239 HG 1240
>SIX3_CHICK (O42406) Homeobox protein SIX3 (Sine oculis homeobox homolog 3)| (CSIX3) Length = 314 Score = 30.8 bits (68), Expect = 1.4 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Frame = -3 Query: 385 PPELGN-------PDSARRAKRRMQHGEGSRVGCSVVGEPGSLRESSTWSPSLGL*AGAS 227 P ++GN D A AK R+QH + G + EPG SS SPS AS Sbjct: 229 PTQVGNWFKNRRQRDRAAAAKNRLQHQAIGQSGMRSLAEPGCPTHSSAESPS----TAAS 284 Query: 226 PSNHHGRNQQEAE 188 P+ + AE Sbjct: 285 PTTSVSSLTERAE 297
>FUT7_HUMAN (Q11130) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 7) (FUCT-VII) (Selectin-ligand synthase) Length = 342 Score = 30.0 bits (66), Expect = 2.4 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 192 ASCWFLP*WLLGDAPAHRPRDGLQVLLSLRDPGSPTTEHPTLLPSPCCMR-RLARLALS 365 A+ W L WLLG AP P Q +++ P T+ P LPS C R +AR LS Sbjct: 25 AALWLL--WLLGSAPRGTPAP--QPTITILVWHWPFTDQPPELPSDTCTRYGIARCHLS 79
>DNLJ_MYCLE (O33102) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 694 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 222 LGDAPAHRPRDGLQVLLSLRDPGSPTTEHPTLL 320 LG RP Q L+LRD G P +EH TL+ Sbjct: 238 LGHIEGFRPATQHQAYLALRDWGLPVSEHTTLV 270
>GLYA_GLUOX (Q5FNK4) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 434 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = -1 Query: 321 AVEWDARWSGNLDPSGRAALGV----HLSAYEQEHLPATIMAGTSKKPRMIKVA 172 A + +W ++ RA G+ + A +EH P I+AG+S PR+I A Sbjct: 142 APNYSGKWFNSVQYGVRAEDGLIDYDQMEALAREHKPKIIVAGSSAYPRVIDFA 195
>GELS_DROME (Q07171) Gelsolin precursor| Length = 798 Score = 29.3 bits (64), Expect = 4.1 Identities = 22/81 (27%), Positives = 33/81 (40%) Frame = +2 Query: 167 GAATLIILGFLLVPAMMVAGRCSCS*AERWTPSAALPEGSRFPDHRASHSTAFAVLHATL 346 GAAT+ +L LLV + + CS P+ + G P + S A V+H + Sbjct: 5 GAATMAVLSSLLVFLALSSSLCSAG-TLNARPAFPVQSGEIQPSGQNSKQAARRVMHPSF 63 Query: 347 GPPGTVRIAEFWGKTSQYHPV 409 G E W + + PV Sbjct: 64 ANAGRTPGLEIW-RIENFEPV 83
>PSD2_PEA (P81930) Defense-related peptide 2 (Defensin-2) (Antifungal protein| Psd2) Length = 47 Score = 29.3 bits (64), Expect = 4.1 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Frame = +1 Query: 154 NCDTRCRNLDHPRLLAGSCHDG--CW 225 NC+ CRN +H LL+G C D CW Sbjct: 19 NCNKHCRNNEH--LLSGRCRDDFRCW 42
>10KD_VIGUN (P18646) 10 kDa protein precursor (Clone PSAS10)| Length = 75 Score = 29.3 bits (64), Expect = 4.1 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +1 Query: 145 STLNCDTRCRNLDHPRLLAGSCHDG--CW 225 +T +CD C+N +H LL+G C D CW Sbjct: 44 TTGSCDDHCKNKEH--LLSGRCRDDVRCW 70
>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4| Length = 799 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 322 LRRAACDAWPAWHCQDCRVLGEDLSISSCT 411 LR AA W A+ C+ CR L + + SC+ Sbjct: 603 LRAAAAPRWEAFCCKTCRALMQGNDVLSCS 632
>CXCC1_HUMAN (Q9P0U4) CpG-binding protein (PHD finger and CXXC domain-containing| protein 1) (CXXC finger protein 1) Length = 656 Score = 28.9 bits (63), Expect = 5.4 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 3/86 (3%) Frame = -3 Query: 370 NPDSARRAKRRMQHGEGSRVGCSVVGEPGSLRESSTWSPSLGL*AGASPSNHHGRNQQEA 191 +PD RRA G G+ VG + S +SS P + A+PS HH + QQ+ Sbjct: 115 DPDLQRRA------GSGTGVGAMLARGSASPHKSSP-QPLV-----ATPSQHHQQQQQQI 162 Query: 190 E-DDQGCGTW--CRN*ELMVSCPACR 122 + + CG CR E C CR Sbjct: 163 KRSARMCGECEACRRTEDCGHCDFCR 188
>RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III) (Drosha) (p241)| Length = 1374 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Frame = -3 Query: 361 SARRAKRRMQHGEGSRVGCSVVGEPGS---------LRESSTWSPSLGL*AGASPSNHHG 209 S R+ ++ G G SVV EP ++ + +W+P L + SPS Sbjct: 302 SLERSYKKEYKRSGRSYGLSVVPEPAGCTPELPGEIIKNTDSWAPPLEIVNHRSPSREKK 361 Query: 208 RNQQEAEDDQ 179 R + E E D+ Sbjct: 362 RARWEEEKDR 371
>FOXH1_XENLA (P70056) Forkhead box protein H1 (Forkhead activin signal| transducer 1) (Fast-1) (xFAST-1) Length = 518 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = -3 Query: 277 RESSTWSPSLGL*AGASPSNHHG 209 RE TWSP G G SP H G Sbjct: 62 REGGTWSPDRGSMYGLSPGTHEG 84
>ATP6_PYLLI (Q37601) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 248 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = +2 Query: 137 GHHQLSIATPGAATLIILGFLLVPAMMVA 223 G H LS+ PG T I+L FLLVP +V+ Sbjct: 137 GFHMLSLFLPG-GTSIVLAFLLVPIEIVS 164
>R4RL1_RAT (Q80WD0) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor| homolog 2) (Nogo-66 receptor-related protein 3) (NgR3) (Nogo receptor-like 2) Length = 445 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +3 Query: 315 LLPSPCCMRRLARLALSGLPSSGGRPLNIILYSRPL 422 +L CC+ L L LP SGG P + + Y P+ Sbjct: 1 MLRKGCCVELLLLLLAGELPLSGGCPRDCVCYPSPM 36
>D108B_PANTR (Q5IAA6) Beta-defensin 108B precursor (Defensin, beta 108B)| (Defensin, beta 108) (Beta-defensin 8) (DEFB-8) (BD-8) (cBD-8) (Fragment) Length = 53 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 202 GSCHDGCWEMLLLIGREMDSK-CCSP*GIQ 288 GSC D C E + +GR ++S+ CC P G Q Sbjct: 13 GSCRDFCLETEIHVGRCLNSRPCCLPLGHQ 42
>S10AE_BOVIN (Q3MHP3) Protein S100-A14 (S100 calcium-binding protein A14)| Length = 104 Score = 28.5 bits (62), Expect = 7.1 Identities = 26/84 (30%), Positives = 36/84 (42%) Frame = +1 Query: 13 VSDFIRTIETLMHNLHSTLGLHHSNGKTRYTLFLIRNGKQDRTPSTLNCDTRCRNLDHPR 192 +SD R IETL+ N H + + GK+ TPS L D + L P Sbjct: 15 LSDVERAIETLIKNFHQ---------------YSVEGGKETLTPSELR-DLVTQQL--PH 56 Query: 193 LLAGSCHDGCWEMLLLIGREMDSK 264 L+ +C G E + +G DSK Sbjct: 57 LMPSNC--GLEEKIANLGNCNDSK 78
>CJ111_HUMAN (Q8N326) Protein C10orf111| Length = 155 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Frame = -1 Query: 297 SGNLDPSGRAALGVHL-SAYEQEHLPATIMAGTSKKPRM 184 +GNL+P R A+ V L SA +++P+++ G SK+ R+ Sbjct: 31 AGNLEPEKRKAVRVALSSATAAQNIPSSVHCGCSKQWRL 69
>AMPA_CAUCR (Q9A7M9) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 493 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -1 Query: 339 ACSTAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEHLPATIMAGTSKKPRMIKVAA 169 A T+ VE + + + + RAA G L+AY + T A +++K+AA Sbjct: 99 AVKTSGVVELVLKLGADAETAARAAFGARLAAYRFDKYRTTEKAEKKPSVQVVKIAA 155
>MFGM_RAT (P70490) Lactadherin precursor (Milk fat globule-EGF factor 8)| (MFG-E8) (O-acetyl GD3 ganglioside synthase) (AGS) (MFGM) Length = 427 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = +1 Query: 124 GKQDRTPSTLNCDTRCRNLDHPRLLAGSCHDGCWEMLLLIGREMDSKCCSP*GIQ 288 G QD +N + RL SCH GC L+G E+ C P G++ Sbjct: 226 GNQDNNSLKINMFNPTLEAQYIRLYPVSCHRGCTLRFELLGCELHG-CSEPLGLK 279
>LUXS_STRPY (P0C0C7) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -2 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKVYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>LUXS_STRP8 (P0A3P9) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -2 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKVYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>LUXS_STRP6 (Q5XAN3) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -2 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKVYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>LUXS_STRP3 (P0A3P8) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -2 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKVYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>LUXS_STRP1 (P0C0C8) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -2 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKVYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>D108B_HUMAN (Q8NET1) Beta-defensin 108B precursor (Defensin, beta 108B)| (Defensin, beta 108) (Beta-defensin 8) (DEFB-8) (BD-8) (hBD-8) Length = 73 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 202 GSCHDGCWEMLLLIGREMDSK-CCSP*GIQ 288 GSC D C E + +GR ++S+ CC P G Q Sbjct: 33 GSCRDFCLETEIHVGRCLNSQPCCLPLGHQ 62
>R4RL1_HUMAN (Q86UN2) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor| homolog 2) (Nogo-66 receptor-related protein 3) (NgR3) (Nogo receptor-like 2) Length = 441 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 315 LLPSPCCMRRLARLALSGLPSSGGRPLNIILYSRPL 422 +L CC+ L L + LP GG P + + Y P+ Sbjct: 1 MLRKGCCVELLLLLVAAELPLGGGCPRDCVCYPAPM 36
>JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylation protein 2B| (EC 1.14.11.-) (Jumonji domain-containing protein 1B) (Nuclear protein 5qNCA) Length = 1761 Score = 28.1 bits (61), Expect = 9.2 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Frame = -3 Query: 388 LPPELGNPDSARRAKRRMQHGEGSRVGCSVV----GEPGSLRESSTWSPSLGL*AGASPS 221 L PE+G ++ K Q G+G +VV P ++R S T GL AG P Sbjct: 394 LAPEVGGAENKEAGKTLEQVGQGIVASAAVVTTASSTPNTVRISDT-----GLAAGTVPE 448 Query: 220 NHHGRNQQEAEDD 182 G Q + ++ Sbjct: 449 KQKGSRSQASGEN 461
>EMR2_HUMAN (Q9UHX3) EGF-like module-containing mucin-like hormone| receptor-like 2 precursor (EGF-like module EMR2) (CD312 antigen) Length = 823 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -3 Query: 196 EAEDDQGCGTWCRN*ELMVSCPACR 122 E +D +GC WC V+ ACR Sbjct: 22 ETQDSRGCARWCPQDSSCVNATACR 46
>CD97_HUMAN (P48960) CD97 antigen precursor (Leukocyte antigen CD97)| Length = 835 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -3 Query: 196 EAEDDQGCGTWCRN*ELMVSCPACR 122 E +D +GC WC V+ ACR Sbjct: 19 ETQDSRGCARWCPQNSSCVNATACR 43
>VST2_HEVME (Q03500) Structural protein 2 precursor| Length = 659 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/64 (29%), Positives = 27/64 (42%) Frame = +3 Query: 231 APAHRPRDGLQVLLSLRDPGSPTTEHPTLLPSPCCMRRLARLALSGLPSSGGRPLNIILY 410 A RP L+ P T+ P + +RR L+ S L SS N++LY Sbjct: 97 ASRRRPATAGAAALTAVAPAHDTSPVPDVDSRGAILRRQYNLSTSPLTSSVASGTNLVLY 156 Query: 411 SRPL 422 + PL Sbjct: 157 AAPL 160 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,756,570 Number of Sequences: 219361 Number of extensions: 1561197 Number of successful extensions: 5075 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 4886 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5074 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
