ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF307145.1| Hordeum vulgare subsp. vulgare glutamine-dependen... 797 0.0
2gb|BT009245.1| Triticum aestivum clone wlk1.pk0018.d4:fis, full ... 656 0.0
3gb|AY621539.1| Triticum aestivum glutamine-dependent asparagine ... 474 e-130
4gb|AY193714.1| Hordeum vulgare asparagine synthetase 2 (AS2) mRN... 170 2e-39
5gb|BT009049.1| Triticum aestivum clone wdk9n1.pk001.f6:fis, full... 170 2e-39
6gb|AF190729.1| Helianthus annuus asparagine synthetase (HAS2) mR... 58 2e-05
7emb|X89409.1|LJAS1GENE L.japonicus mRNA for asparagine synthetas... 50 0.006
8emb|Z72354.1|VFAS1 V.faba mRNA for asparagine synthetase 46 0.093
9emb|X52179.1|PSAS1 Pea AS1 nodule mRNA for asparagine synthase (... 46 0.093
10emb|AJ133522.1|PVU133522 Phaseolus vulgaris mRNA for asparagine ... 46 0.093
11emb|AJ496567.2|PSY496567 Pinus sylvestris mRNA for putative aspa... 46 0.093
12emb|CT573508.2| Medicago truncatula chromosome 5 clone mth2-29p1... 46 0.093
13gb|U77679.1|GMU77679 Glycine max asparagine synthetase 1 (AS1) m... 46 0.093
14gb|U77678.1|GMU77678 Glycine max asparagine synthetase 2 (AS2) m... 46 0.093
15gb|AC099500.2| Homo sapiens chromosome 19 clone RP11-209J6, comp... 42 1.5
16gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 1.5
17gb|AC139769.1| Homo sapiens chromosome 19 clone RP11-255H23, com... 42 1.5
18gb|AC138126.1| Homo sapiens chromosome 19 clone RP11-274A19, com... 42 1.5
19gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.8
20emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chro... 40 5.8
21emb|Y10196.1|HSPEX Homo sapiens PHEX gene 40 5.8
22emb|X99552.1|AOASPS A.officinalis gene encoding asparagine synth... 40 5.8
23emb|X67958.1|AOASPSYNM A.officinalis mRNA for asparagine synthetase 40 5.8
24emb|CR932777.1| Human DNA sequence from clone XX-NCIH2171_7H20, ... 40 5.8
25gb|AC087692.7| Homo sapiens chromosome 8, clone RP11-67D13, comp... 40 5.8
26gb|AC084880.12| Homo sapiens 12 BAC RP11-64B16 (Roswell Park Can... 40 5.8
27gb|AC021523.8| Homo sapiens chromosome 8, clone RP11-336N16, com... 40 5.8
28gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map ... 40 5.8
29gb|AC092754.4| Homo sapiens chromosome 15 clone RP11-112N19 map ... 40 5.8
30gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-... 40 5.8
31gb|AC005344.1| Homo sapiens 12 PAC RPCI1-53O8 (Roswell Park Canc... 40 5.8
32gb|AC132436.3| Mus musculus BAC clone RP23-226J18 from 1, comple... 40 5.8 
>gb|AF307145.1| Hordeum vulgare subsp. vulgare glutamine-dependent asparagine
            synthetase 1 mRNA, complete cds
          Length = 1973

 Score =  797 bits (402), Expect = 0.0
 Identities = 426/430 (99%), Gaps = 3/430 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    agaaatcatccggtctctgatttcataagaactatagaaacattaatgcacaatcttcac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 agaaatcatccggtctctgatttcataagaactatagaaacattaatgcacaatcttcac 1914

                                                                        
Query: 61   tcaaccttaggtctgcatcactctaatggcaagactaggtacaccttatttcttatcaga 120
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1913 tcaaccttaggtctgcatcactctaatggcaagactaggtacatcttatttcttatcaga 1854

                                                                        
Query: 121  aacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaacctt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 aacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaacctt 1794

                                                                        
Query: 181  gatcatcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgctc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 gatcatcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgctc 1734

                                                                        
Query: 241  ataggccgagagatggactccaagtgctgctctccctgagggatccaggttccccgacca 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 ataggccgagagatggactccaagtgctgctctccctgagggatccaggttccccgacca 1674

                                                                        
Query: 301  ccgagcatcccactctactgccttcgccgtgctgcatgcgacgcttggcccgcctggcac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 ccgagcatcccactctactgccttcgccgtgctgcatgcgacgcttggcccgcctggcac 1614

                                                                        
Query: 361  tgtcaggattgccgagttctgggggaag-acctctc-aatatcatcctgt-acagtaggc 417
            |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct: 1613 tgtcaggattgccgagttctgggggaagaacctctcaaatatcatcctgtaacagtaggc 1554

                      
Query: 418  ctcttttgta 427
            ||||||||||
Sbjct: 1553 ctcttttgta 1544
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>gb|BT009245.1| Triticum aestivum clone wlk1.pk0018.d4:fis, full insert mRNA sequence
          Length = 2064

 Score =  656 bits (331), Expect = 0.0
 Identities = 410/431 (95%), Gaps = 4/431 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    agaaatcatccggtctctgatttcataagaactatagaaacattaatgcacaatcttcac 60
            ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1958 agaaatcatccggtctccgatttcataagaacaatagaaacattaatgcacaatcttcac 1899

                                                                        
Query: 61   tcaa-ccttaggtctgcatcactctaatggcaagactaggtacaccttatttcttatcag 119
            |||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1898 tcaaaccttaggtctgcaccactctaatggcaagaccaggtacatcttatttcttatcag 1839

                                                                        
Query: 120  aaacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaacct 179
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1838 aaacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggcgccgcaacct 1779

                                                                        
Query: 180  tgatcatcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgct 239
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1778 cgatcatccttggcttcttgctggttcctgccatgatggttgctgggagatgctcctgtt 1719

                                                                        
Query: 240  cataggccgagagatggactccaagtgctgctctccctgagggatccaggttccccgacc 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1718 cataggccgagagatggactccaagtgctgctctccctgagggatccaggttccctgacc 1659

                                                                        
Query: 300  accgagcatcccactctactgccttcgccgtgctgcatgcgacgcttggcccgcctggca 359
            || | |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1658 actgggcatcccactctaccgccttcgccgtgctgcatgcaacgcttggcccacctggca 1599

                                                                        
Query: 360  ctgtcaggattgccgagttctgggggaag-acctctc-aatatcatcctgt-acagtagg 416
            | |||||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct: 1598 ccgtcaggatcgccgagttctgggggaagaacctctcaaatatcatcctgtaacagtagg 1539

                       
Query: 417  cctcttttgta 427
            |||||||||||
Sbjct: 1538 cctcttttgta 1528
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>gb|AY621539.1| Triticum aestivum glutamine-dependent asparagine synthetase (ASN1)
            mRNA, complete cds
          Length = 1815

 Score =  474 bits (239), Expect = e-130
 Identities = 293/307 (95%), Gaps = 3/307 (0%)
 Strand = Plus / Minus

                                                                        
Query: 124  ggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaaccttgat 183
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 1800 ggcaagcaggacaggacaccatcaactctcaattgcgacaccaggcgccgcaacctcgat 1741

                                                                        
Query: 184  catcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgctcata 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1740 catcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgttcata 1681

                                                                        
Query: 244  ggccgagagatggactccaagtgctgctctccctgagggatccaggttccccgaccaccg 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 1680 ggccgagagatggactccaagtgctgctctccctgagggatccaggttccctgaccactg 1621

                                                                        
Query: 304  agcatcccactctactgccttcgccgtgctgcatgcgacgcttggcccgcctggcactgt 363
             |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct: 1620 ggcatcccactctaccgccttcgccgtgctgcatgcaacgcttggcccacctggcaccgt 1561

                                                                        
Query: 364  caggattgccgagttctgggggaag-acctctc-aatatcatcctgt-acagtaggcctc 420
            |||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||
Sbjct: 1560 caggatcgccgagttctgggggaagaacctctcaaatatcatcctgtaacagtaggcctc 1501

                   
Query: 421  ttttgta 427
            |||||||
Sbjct: 1500 ttttgta 1494
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>gb|AY193714.1| Hordeum vulgare asparagine synthetase 2 (AS2) mRNA, complete cds
          Length = 1867

 Score =  170 bits (86), Expect = 2e-39
 Identities = 170/194 (87%), Gaps = 3/194 (1%)
 Strand = Plus / Minus

                                                                        
Query: 233  tcctgctcataggccgagagatggactccaagtgctgctctccctgagggatccaggttc 292
            |||||||| ||||| ||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 1670 tcctgctcgtaggctgagagatggactccaagcgctgctctcccagaggggtccaggttc 1611

                                                                        
Query: 293  cccgaccaccgagcatcccactctactgccttcgccgtgctgcatgcgacgcttggcccg 352
            || |||||| | || |||||||||| |||||| || |||||||| || ||||||||||||
Sbjct: 1610 ccagaccactgcgcgtcccactctattgccttggctgtgctgcacgccacgcttggcccg 1551

                                                                        
Query: 353  cctggcactgtcaggattgccgagttctgggggaag-acctctc-aatatcatcctgt-a 409
            |||||||| || ||||| |||||| |||| |||||| ||||||| || |||||||||| |
Sbjct: 1550 cctggcaccgtgaggatcgccgagctctgagggaagtacctctcgaagatcatcctgtaa 1491

                          
Query: 410  cagtaggcctcttt 423
             |||||||||||||
Sbjct: 1490 tagtaggcctcttt 1477
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>gb|BT009049.1| Triticum aestivum clone wdk9n1.pk001.f6:fis, full insert mRNA
            sequence
          Length = 2119

 Score =  170 bits (86), Expect = 2e-39
 Identities = 170/194 (87%), Gaps = 3/194 (1%)
 Strand = Plus / Minus

                                                                        
Query: 233  tcctgctcataggccgagagatggactccaagtgctgctctccctgagggatccaggttc 292
            |||||||| ||||| ||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 1739 tcctgctcgtaggctgagagatggactccaagcgctgctctcccagaggggtccaggttc 1680

                                                                        
Query: 293  cccgaccaccgagcatcccactctactgccttcgccgtgctgcatgcgacgcttggcccg 352
            || |||||  | |||||||||||||  ||||| || |||||||| || ||||||||||||
Sbjct: 1679 ccagaccattgggcatcccactctatagccttggctgtgctgcacgccacgcttggcccg 1620

                                                                        
Query: 353  cctggcactgtcaggattgccgagttctgggggaag-acctctc-aatatcatcctgt-a 409
            |||||||| || ||||| |||||| ||||||||||| ||||||| || |||||||||| |
Sbjct: 1619 cctggcaccgtgaggatcgccgagctctgggggaagtacctctcaaagatcatcctgtaa 1560

                          
Query: 410  cagtaggcctcttt 423
             |||||||||||||
Sbjct: 1559 tagtaggcctcttt 1546
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>gb|AF190729.1| Helianthus annuus asparagine synthetase (HAS2) mRNA, complete cds
          Length = 1850

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 305  gcatcccactctactgccttcgccgtgctgcatgcgacgcttggcccgcctgg 357
            |||||||||||||| ||||| |||||||||||||| || ||||| || |||||
Sbjct: 1623 gcatcccactctaccgccttagccgtgctgcatgccacacttggaccccctgg 1571
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>emb|X89409.1|LJAS1GENE L.japonicus mRNA for asparagine synthetase (clone LJAS1)
          Length = 2053

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                        
Query: 251  agatggactccaagtgctgctctccctgagggatccaggttccccgaccaccgagcatcc 310
            ||||| ||||| ||||||||||| ||||| ||||| |||||    |||||   |||||||
Sbjct: 1750 agatgcactcctagtgctgctctacctgaaggatcaaggttattagaccaagcagcatcc 1691

                                         
Query: 311  cactctactgccttcgccgtgctgcatgc 339
            ||||| |||||||| || ||||| |||||
Sbjct: 1690 cactcaactgcctttgctgtgctacatgc 1662
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>emb|Z72354.1|VFAS1 V.faba mRNA for asparagine synthetase
          Length = 2154

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 104/131 (79%)
 Strand = Plus / Minus

                                                                        
Query: 257  actccaagtgctgctctccctgagggatccaggttccccgaccaccgagcatcccactct 316
            ||||||||||||||||| || || ||||| ||||| || |||||   ||||||||| || 
Sbjct: 1766 actccaagtgctgctctaccagatggatcaaggttgcctgaccaagaagcatcccattca 1707

                                                                        
Query: 317  actgccttcgccgtgctgcatgcgacgcttggcccgcctggcactgtcaggattgccgag 376
            |  || ||  | ||||||||||| || || || || || || ||||||||  ||||||||
Sbjct: 1706 atagctttttctgtgctgcatgcaacactaggtcctccaggaactgtcagccttgccgag 1647

                       
Query: 377  ttctgggggaa 387
            ||||| |||||
Sbjct: 1646 ttctgagggaa 1636
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>emb|X52179.1|PSAS1 Pea AS1 nodule mRNA for asparagine synthase (EC 6.3.5.4)
          Length = 2200

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 257  actccaagtgctgctctccctgagggatccaggtt 291
            ||||||||||||||||| || || |||||||||||
Sbjct: 1742 actccaagtgctgctctaccagaaggatccaggtt 1708
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>emb|AJ133522.1|PVU133522 Phaseolus vulgaris mRNA for asparagine synthetase type-I
          Length = 2086

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 257  actccaagtgctgctctccctgagggatccaggtt 291
            ||||||||||||||||| ||||| ||||| |||||
Sbjct: 1793 actccaagtgctgctctacctgatggatcaaggtt 1759
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>emb|AJ496567.2|PSY496567 Pinus sylvestris mRNA for putative asparagine synthetase (asn1 gene)
          Length = 2110

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 304  agcatcccactctactgccttcgccgtgctgcatgcgacgcttggcccgcc 354
            ||||||||| || |||||||| || ||||| || || ||||||||||||||
Sbjct: 1691 agcatcccattccactgcctttgcggtgctacaagccacgcttggcccgcc 1641
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>emb|CT573508.2| Medicago truncatula chromosome 5 clone mth2-29p15, COMPLETE SEQUENCE
          Length = 125647

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                        
Query: 257  actccaagtgctgctctccctgagggatccaggttccccgaccaccgagcatcccactct 316
            ||||||||||||||||| || || ||||| ||||||   |||||   |||||||||||| 
Sbjct: 7521 actccaagtgctgctctaccagaaggatcaaggttcttggaccaagaagcatcccactca 7462

                                   
Query: 317  actgccttcgccgtgctgcatgc 339
            || ||||| || ||||| |||||
Sbjct: 7461 acagccttagctgtgctacatgc 7439
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>gb|U77679.1|GMU77679 Glycine max asparagine synthetase 1 (AS1) mRNA, complete cds
          Length = 2108

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 257  actccaagtgctgctctccctgagggatccaggtt 291
            ||||||||||||||||| ||||| ||||| |||||
Sbjct: 1796 actccaagtgctgctctacctgatggatcaaggtt 1762
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>gb|U77678.1|GMU77678 Glycine max asparagine synthetase 2 (AS2) mRNA, complete cds
          Length = 2143

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 257  actccaagtgctgctctccctgagggatccaggtt 291
            ||||||||||||||||| || |||||||| |||||
Sbjct: 1800 actccaagtgctgctctaccagagggatcaaggtt 1766
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>gb|AC099500.2| Homo sapiens chromosome 19 clone RP11-209J6, complete sequence
          Length = 138627

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 380   tgggggaagacctctcaatat 400
             |||||||||||||||||||||
Sbjct: 71555 tgggggaagacctctcaatat 71535
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 298     ccaccgagcatcccactctac 318
               |||||||||||||||||||||
Sbjct: 3292410 ccaccgagcatcccactctac 3292390
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>gb|AC139769.1| Homo sapiens chromosome 19 clone RP11-255H23, complete sequence
          Length = 136449

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 380   tgggggaagacctctcaatat 400
             |||||||||||||||||||||
Sbjct: 22597 tgggggaagacctctcaatat 22577
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>gb|AC138126.1| Homo sapiens chromosome 19 clone RP11-274A19, complete sequence
          Length = 169063

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 380    tgggggaagacctctcaatat 400
              |||||||||||||||||||||
Sbjct: 102424 tgggggaagacctctcaatat 102404
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 228     gatgctcctgctcataggcc 247
               ||||||||||||||||||||
Sbjct: 2224484 gatgctcctgctcataggcc 2224503
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>emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chromosome 13 Contains the
            3' end of the COL4A2 gene for collagen type IV alpha 2,
            the RAB20 gene for a RAS oncogene family member, a novel
            gene (FLJ10769 FLJ25038 FLJ14198), the 5' end of a novel
            gene (FLJ12118) and three CpG islands, complete sequence
          Length = 177392

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 195  tcttgctggttcctgccatgatgg 218
            |||||||| |||||||||||||||
Sbjct: 8457 tcttgctgtttcctgccatgatgg 8480
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>emb|Y10196.1|HSPEX Homo sapiens PHEX gene
          Length = 242825

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ctatagaaacattaatgcac 51
             ||||||||||||||||||||
Sbjct: 22051 ctatagaaacattaatgcac 22070
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>emb|X99552.1|AOASPS A.officinalis gene encoding asparagine synthetase
          Length = 3812

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 253  atggactccaagtgctgctctccctgagggatccaggttccccgaccaccgagcatccca 312
            |||||| || || ||||||||||| || |||||||  ||   |||||| ||||| |||||
Sbjct: 3689 atggacgccgagagctgctctccccgacggatccaaattgttcgaccagcgagcgtccca 3630

                                    
Query: 313  ctctactgccttcgccgtgctgca 336
             || |  |||||||||||||||||
Sbjct: 3629 ttcgatagccttcgccgtgctgca 3606
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>emb|X67958.1|AOASPSYNM A.officinalis mRNA for asparagine synthetase
          Length = 1978

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 253  atggactccaagtgctgctctccctgagggatccaggttccccgaccaccgagcatccca 312
            |||||| || || ||||||||||| || |||||||  ||   |||||| ||||| |||||
Sbjct: 1705 atggacgccgagagctgctctccccgacggatccaaattgttcgaccagcgagcgtccca 1646

                                    
Query: 313  ctctactgccttcgccgtgctgca 336
             || |  |||||||||||||||||
Sbjct: 1645 ttcgatagccttcgccgtgctgca 1622
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>emb|CR932777.1| Human DNA sequence from clone XX-NCIH2171_7H20, complete sequence
          Length = 115459

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ttcactcaaccttaggtctg 75
             ||||||||||||||||||||
Sbjct: 16589 ttcactcaaccttaggtctg 16570
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>gb|AC087692.7| Homo sapiens chromosome 8, clone RP11-67D13, complete sequence
          Length = 146549

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 264  gtgctgctctccctgagggatcca 287
            |||||||||||| |||||||||||
Sbjct: 3400 gtgctgctctccatgagggatcca 3423
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>gb|AC084880.12| Homo sapiens 12 BAC RP11-64B16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110001

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 17    ctgatttcataagaactatagaaa 40
             ||||| ||||||||||||||||||
Sbjct: 64664 ctgatctcataagaactatagaaa 64641
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>gb|AC021523.8| Homo sapiens chromosome 8, clone RP11-336N16, complete sequence
          Length = 170299

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 264    gtgctgctctccctgagggatcca 287
              |||||||||||| |||||||||||
Sbjct: 156531 gtgctgctctccatgagggatcca 156554
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>gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map 15q22, complete
             sequence
          Length = 187429

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ccttaggtctgcatcactct 84
             ||||||||||||||||||||
Sbjct: 14165 ccttaggtctgcatcactct 14184
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>gb|AC092754.4| Homo sapiens chromosome 15 clone RP11-112N19 map 15q22, complete sequence
          Length = 173411

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     ccttaggtctgcatcactct 84
              ||||||||||||||||||||
Sbjct: 152367 ccttaggtctgcatcactct 152386
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>gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-22.2, complete sequence
          Length = 38476

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ctatagaaacattaatgcac 51
             ||||||||||||||||||||
Sbjct: 31688 ctatagaaacattaatgcac 31707
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>gb|AC005344.1| Homo sapiens 12 PAC RPCI1-53O8 (Roswell Park Cancer Institute Human PAC
             library) complete sequence
          Length = 153836

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ttcactcaaccttaggtctg 75
             ||||||||||||||||||||
Sbjct: 21723 ttcactcaaccttaggtctg 21704
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>gb|AC132436.3| Mus musculus BAC clone RP23-226J18 from 1, complete sequence
          Length = 248067

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 264    gtgctgctctccctgagggatcca 287
              ||||||||||||| ||||||||||
Sbjct: 165502 gtgctgctctcccagagggatcca 165479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,411,054
Number of Sequences: 3902068
Number of extensions: 3411054
Number of successful extensions: 60500
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 60410
Number of HSP's gapped (non-prelim): 82
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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