ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 159 8e-36
2dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic D... 159 8e-36
3dbj|AK107018.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 8e-36
4dbj|AK102510.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 8e-36
5dbj|AK067346.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 8e-36
6dbj|AK063975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 8e-36
7ref|XM_493721.1| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
9dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
10ref|XM_478702.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
11gb|AY342322.1| Oryza sativa (japonica cultivar-group) monosaccha... 54 3e-04
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
13dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
14ref|XM_506838.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.021
15ref|XM_466374.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.021
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
17dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
18dbj|AK121678.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
19dbj|AK119890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
20emb|X55349.1|CKHUP1G C.kessleri HUP1 gene for H(+)/hexose-cotran... 48 0.021
21emb|Y07520.1|CKHUP1 Chlorella kessleri HUP1 mRNA for H(+)/hexose... 48 0.021
22ref|XM_480356.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.084
23ref|XM_507147.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.084
24gb|AY683004.1| Zea mays monosaccharide transport protein 1 (MST1... 46 0.084
25dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
26dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
27dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
28dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
29dbj|AK072269.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
30dbj|AK070877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
31dbj|AK065807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
32gb|AY104890.1| Zea mays PCO071167 mRNA sequence 46 0.084
33gb|L21752.1|SCFGLUTRAA Saccharum hybrid cultivar H65-7052 glucos... 46 0.084
34gb|L21753.1|SCFGLUTRAB Saccharum hybrid cultivar H65-7052 glucos... 46 0.084
35ref|XM_450383.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.33
36ref|XM_477077.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.33
37dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
38dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
39dbj|AK119911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
40dbj|AK067908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
41gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 0.33
42ref|XM_472689.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
43gb|AC101948.10| Mus musculus chromosome 15, clone RP24-139K14, c... 42 1.3
44gb|AC158567.3| Mus musculus chromosome 15, clone RP24-93F2, comp... 42 1.3
45emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
46dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
47gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromo... 40 5.2
48gb|AC122370.4| Mus musculus BAC clone RP23-459B8 from chromosome... 40 5.2
49emb|BX649118.1|HSM809270 Homo sapiens mRNA; cDNA DKFZp686J0529 (... 40 5.2
50ref|XM_932259.1| PREDICTED: Homo sapiens hypothetical protein DK... 40 5.2
51gb|AC023754.3|AC023754 Arabidopsis thaliana chromosome I BAC F1B... 40 5.2
52gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana... 40 5.2
53emb|BX072566.10| Human DNA sequence from clone RP11-25L22 on chr... 40 5.2
54dbj|BS000002.1| Pan troglodytes chromosome 22 clone:PTB-056N14, ... 40 5.2
55dbj|AP006261.1| Homo sapiens genomic DNA, chromosome 18, clone:C... 40 5.2
56gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.2
57emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003 40 5.2
58dbj|AP005670.1| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.2
59dbj|AP001465.1| Homo sapiens genomic DNA, chromosome 21q11.1, cl... 40 5.2 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Plus

                                                                           
Query: 270     tggtggtgtccctggtactttgggtccttggtgacgatccgcttccagtaccagtgcttg 329
               |||||||| ||||| ||||| ||||||||  ||||||| |||||||| ||||||||||||
Sbjct: 9313826 tggtggtggccctgatacttggggtccttcctgacgatgcgcttccaataccagtgcttg 9313885

                                                                           
Query: 330     tcgaagagcagccatatctcctcgatgggcacctgcttggtctccggcagcaggaggatg 389
               |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9313886 tcgaagagcatccagatctcctcgatgggcacctgcttggtctccggcaggaggaggatg 9313945



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 345      atctcctcgatgggcacctgcttggtctccggcag 379
                |||||||||||||||||   |||||||||||||||
Sbjct: 14838274 atctcctcgatgggcacgcccttggtctccggcag 14838240



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 365     cttggtctccggcagcaggagg 386
               ||||||||||||||||||||||
Sbjct: 5087816 cttggtctccggcagcaggagg 5087795
to top
>dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1742_G01
          Length = 154912

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Plus

                                                                          
Query: 270    tggtggtgtccctggtactttgggtccttggtgacgatccgcttccagtaccagtgcttg 329
              |||||||| ||||| ||||| ||||||||  ||||||| |||||||| ||||||||||||
Sbjct: 139117 tggtggtggccctgatacttggggtccttcctgacgatgcgcttccaataccagtgcttg 139176

                                                                          
Query: 330    tcgaagagcagccatatctcctcgatgggcacctgcttggtctccggcagcaggaggatg 389
              |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 139177 tcgaagagcatccagatctcctcgatgggcacctgcttggtctccggcaggaggaggatg 139236
to top
>dbj|AK107018.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H05, full
           insert sequence
          Length = 1998

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Plus

                                                                       
Query: 270 tggtggtgtccctggtactttgggtccttggtgacgatccgcttccagtaccagtgcttg 329
           |||||||| ||||| ||||| ||||||||  ||||||| |||||||| ||||||||||||
Sbjct: 73  tggtggtggccctgatacttggggtccttcctgacgatgcgcttccaataccagtgcttg 132

                                                                       
Query: 330 tcgaagagcagccatatctcctcgatgggcacctgcttggtctccggcagcaggaggatg 389
           |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 133 tcgaagagcatccagatctcctcgatgggcacctgcttggtctccggcaggaggaggatg 192
to top
>dbj|AK102510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095G20, full
           insert sequence
          Length = 1284

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Minus

                                                                       
Query: 270 tggtggtgtccctggtactttgggtccttggtgacgatccgcttccagtaccagtgcttg 329
           |||||||| ||||| ||||| ||||||||  ||||||| |||||||| ||||||||||||
Sbjct: 997 tggtggtggccctgatacttggggtccttcctgacgatgcgcttccaataccagtgcttg 938

                                                                       
Query: 330 tcgaagagcagccatatctcctcgatgggcacctgcttggtctccggcagcaggaggatg 389
           |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 937 tcgaagagcatccagatctcctcgatgggcacctgcttggtctccggcaggaggaggatg 878
to top
>dbj|AK067346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106G10, full
            insert sequence
          Length = 2150

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Minus

                                                                        
Query: 270  tggtggtgtccctggtactttgggtccttggtgacgatccgcttccagtaccagtgcttg 329
            |||||||| ||||| ||||| ||||||||  ||||||| |||||||| ||||||||||||
Sbjct: 1861 tggtggtggccctgatacttggggtccttcctgacgatgcgcttccaataccagtgcttg 1802

                                                                        
Query: 330  tcgaagagcagccatatctcctcgatgggcacctgcttggtctccggcagcaggaggatg 389
            |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1801 tcgaagagcatccagatctcctcgatgggcacctgcttggtctccggcaggaggaggatg 1742
to top
>dbj|AK063975.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B10, full
            insert sequence
          Length = 1532

 Score =  159 bits (80), Expect = 8e-36
 Identities = 110/120 (91%)
 Strand = Plus / Minus

                                                                        
Query: 270  tggtggtgtccctggtactttgggtccttggtgacgatccgcttccagtaccagtgcttg 329
            |||||||| ||||| ||||| ||||||||  ||||||| |||||||| ||||||||||||
Sbjct: 1182 tggtggtggccctgatacttggggtccttcctgacgatgcgcttccaataccagtgcttg 1123

                                                                        
Query: 330  tcgaagagcagccatatctcctcgatgggcacctgcttggtctccggcagcaggaggatg 389
            |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1122 tcgaagagcatccagatctcctcgatgggcacctgcttggtctccggcaggaggaggatg 1063
to top
>ref|XM_493721.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1563

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 347  ctcctcgatgggcacctgcttggtctccggcagcaggagg 386
            ||||||||||||||||  ||||||||||||||| ||||||
Sbjct: 1470 ctcctcgatgggcacccccttggtctccggcaggaggagg 1431
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 347     ctcctcgatgggcacctgcttggtctccggcagcaggagg 386
               ||||||||||||||||  ||||||||||||||| ||||||
Sbjct: 2154162 ctcctcgatgggcacccccttggtctccggcaggaggagg 2154201
to top
>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0535G04
          Length = 154180

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 347   ctcctcgatgggcacctgcttggtctccggcagcaggagg 386
             ||||||||||||||||  ||||||||||||||| ||||||
Sbjct: 13619 ctcctcgatgggcacccccttggtctccggcaggaggagg 13658
to top
>ref|XM_478702.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1593

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            ||||||||||||||||| | |||||||||||||||
Sbjct: 1457 atctcctcgatgggcacgttcttggtctccggcag 1423
to top
>gb|AY342322.1| Oryza sativa (japonica cultivar-group) monosaccharide transporter 6
            (MST6) mRNA, complete cds
          Length = 1590

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            ||||||||||||||||| | |||||||||||||||
Sbjct: 1454 atctcctcgatgggcacgttcttggtctccggcag 1420
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 345      atctcctcgatgggcacctgcttggtctccggcag 379
                ||||||||||||||||| | |||||||||||||||
Sbjct: 22299919 atctcctcgatgggcacgttcttggtctccggcag 22299953



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 345     atctcctcgatgggcacctgcttggtctccggcagcag 382
               ||||| ||||||||||||  ||| ||||||||||||||
Sbjct: 5779789 atctcgtcgatgggcacccccttcgtctccggcagcag 5779826
to top
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0567H04
          Length = 181420

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 345    atctcctcgatgggcacctgcttggtctccggcag 379
              ||||||||||||||||| | |||||||||||||||
Sbjct: 105165 atctcctcgatgggcacgttcttggtctccggcag 105199
to top
>ref|XM_506838.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0046L23.14
            mRNA
          Length = 1939

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 350  ctcgatgggcacctgcttggtctccggcagcaggag 385
            |||||||||||||  ||||||||||||||| |||||
Sbjct: 1539 ctcgatgggcacccccttggtctccggcaggaggag 1504
to top
>ref|XM_466374.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1927

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 350  ctcgatgggcacctgcttggtctccggcagcaggag 385
            |||||||||||||  ||||||||||||||| |||||
Sbjct: 1544 ctcgatgggcacccccttggtctccggcaggaggag 1509
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 350      ctcgatgggcacctgcttggtctccggcagcaggag 385
                |||||||||||||  ||||||||||||||| |||||
Sbjct: 22021512 ctcgatgggcacccccttggtctccggcaggaggag 22021477
to top
>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046L23
          Length = 100041

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 350   ctcgatgggcacctgcttggtctccggcagcaggag 385
             |||||||||||||  ||||||||||||||| |||||
Sbjct: 70134 ctcgatgggcacccccttggtctccggcaggaggag 70099
to top
>dbj|AK121678.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H05, full
            insert sequence
          Length = 1940

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 350  ctcgatgggcacctgcttggtctccggcagcaggag 385
            |||||||||||||  ||||||||||||||| |||||
Sbjct: 1540 ctcgatgggcacccccttggtctccggcaggaggag 1505
to top
>dbj|AK119890.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-A05, full
            insert sequence
          Length = 1927

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 350  ctcgatgggcacctgcttggtctccggcagcaggag 385
            |||||||||||||  ||||||||||||||| |||||
Sbjct: 1544 ctcgatgggcacccccttggtctccggcaggaggag 1509
to top
>emb|X55349.1|CKHUP1G C.kessleri HUP1 gene for H(+)/hexose-cotransporter
          Length = 6494

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 350  ctcgatgggcacctgcttggtctccggcagcaggaggatg 389
            |||||||||||||  ||||||||| |||||||||| ||||
Sbjct: 5256 ctcgatgggcacccccttggtctcaggcagcaggaagatg 5217
to top
>emb|Y07520.1|CKHUP1 Chlorella kessleri HUP1 mRNA for H(+)/hexose cotransporter
          Length = 2481

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 350  ctcgatgggcacctgcttggtctccggcagcaggaggatg 389
            |||||||||||||  ||||||||| |||||||||| ||||
Sbjct: 1571 ctcgatgggcacccccttggtctcaggcagcaggaagatg 1532
to top
>ref|XM_480356.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1743

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            ||||||||||||||||||  ||| |||||||||||
Sbjct: 1524 atctcctcgatgggcacccccttcgtctccggcag 1490
to top
>ref|XM_507147.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1120_C08.22 mRNA
          Length = 2059

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            ||||||||||||||||||  ||| |||||||||||
Sbjct: 1524 atctcctcgatgggcacccccttcgtctccggcag 1490
to top
>gb|AY683004.1| Zea mays monosaccharide transport protein 1 (MST1) mRNA, complete cds
          Length = 1770

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            ||||||||||||||||| | ||||||||| |||||
Sbjct: 1481 atctcctcgatgggcacgttcttggtctcgggcag 1447
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 345     atctcctcgatgggcacctgcttggtctccggcag 379
               ||||||||||||||||||  ||| |||||||||||
Sbjct: 4576610 atctcctcgatgggcacccccttcgtctccggcag 4576576
to top
>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1120_C08
          Length = 150300

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 345    atctcctcgatgggcacctgcttggtctccggcag 379
              ||||||||||||||||||  ||| |||||||||||
Sbjct: 100458 atctcctcgatgggcacccccttcgtctccggcag 100424
to top
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0707C02
          Length = 163609

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 345    atctcctcgatgggcacctgcttggtctccggcag 379
              |||||||||||||||||   |||||||||||||||
Sbjct: 123663 atctcctcgatgggcacgcccttggtctccggcag 123629
to top
>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0014G10
          Length = 164147

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 345   atctcctcgatgggcacctgcttggtctccggcag 379
             |||||||||||||||||   |||||||||||||||
Sbjct: 46613 atctcctcgatgggcacgcccttggtctccggcag 46579
to top
>dbj|AK072269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008O22, full
            insert sequence
          Length = 1743

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            ||||||||||||||||||  ||| |||||||||||
Sbjct: 1524 atctcctcgatgggcacccccttcgtctccggcag 1490
to top
>dbj|AK070877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065C06, full
            insert sequence
          Length = 2059

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            ||||||||||||||||||  ||| |||||||||||
Sbjct: 1524 atctcctcgatgggcacccccttcgtctccggcag 1490
to top
>dbj|AK065807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037F14, full
            insert sequence
          Length = 1850

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            |||||||||||||||||   |||||||||||||||
Sbjct: 1549 atctcctcgatgggcacgcccttggtctccggcag 1515
to top
>gb|AY104890.1| Zea mays PCO071167 mRNA sequence
          Length = 1683

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            |||| ||| ||||||| ||||||||||||||||||
Sbjct: 1442 atctgctccatgggcagctgcttggtctccggcag 1476
to top
>gb|L21752.1|SCFGLUTRAA Saccharum hybrid cultivar H65-7052 glucose transporter mRNA,
           partial cds
          Length = 1215

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 345 atctcctcgatgggcacctgcttggtctccggcag 379
           |||||||||||||||||   |||||||||||||||
Sbjct: 760 atctcctcgatgggcacgcccttggtctccggcag 726
to top
>gb|L21753.1|SCFGLUTRAB Saccharum hybrid cultivar H65-7052 glucose transporter mRNA, complete
            cds
          Length = 1726

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 345  atctcctcgatgggcacctgcttggtctccggcag 379
            |||||||||||||||||   |||||||||||||||
Sbjct: 1523 atctcctcgatgggcacgcccttggtctccggcag 1489
to top
>ref|XM_450383.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1794

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 365  cttggtctccggcagcaggagg 386
            ||||||||||||||||||||||
Sbjct: 1490 cttggtctccggcagcaggagg 1469
to top
>ref|XM_477077.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1548

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 345  atctcctcgatgggcacctgcttggtctccggcagcag 382
            ||||| ||||||||||||  ||| ||||||||||||||
Sbjct: 1466 atctcgtcgatgggcacccccttcgtctccggcagcag 1429
to top
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1119_B04
          Length = 151721

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 345   atctcctcgatgggcacctgcttggtctccggcagcag 382
             ||||| ||||||||||||  ||| ||||||||||||||
Sbjct: 86817 atctcgtcgatgggcacccccttcgtctccggcagcag 86854
to top
>dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1008E06
          Length = 170228

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 365   cttggtctccggcagcaggagg 386
             ||||||||||||||||||||||
Sbjct: 89933 cttggtctccggcagcaggagg 89912
to top
>dbj|AK119911.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C06, full
            insert sequence
          Length = 1750

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 345  atctcctcgatgggcacctgcttggtctccggcagcag 382
            ||||| ||||||||||||  ||| ||||||||||||||
Sbjct: 1507 atctcgtcgatgggcacccccttcgtctccggcagcag 1470
to top
>dbj|AK067908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126N07, full
            insert sequence
          Length = 1795

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 365  cttggtctccggcagcaggagg 386
            ||||||||||||||||||||||
Sbjct: 1491 cttggtctccggcagcaggagg 1470
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 356   gggcacctgcttggtctccggc 377
             ||||||||||||||||||||||
Sbjct: 17059 gggcacctgcttggtctccggc 17080
to top
>ref|XM_472689.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1524

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 308  ccgcttccagtaccagtgctt 328
            |||||||||||||||||||||
Sbjct: 1479 ccgcttccagtaccagtgctt 1459
to top
>gb|AC101948.10| Mus musculus chromosome 15, clone RP24-139K14, complete sequence
          Length = 182534

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    cattgtaatcttattaaaaca 174
              |||||||||||||||||||||
Sbjct: 181001 cattgtaatcttattaaaaca 181021
to top
>gb|AC158567.3| Mus musculus chromosome 15, clone RP24-93F2, complete sequence
          Length = 188718

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    cattgtaatcttattaaaaca 174
              |||||||||||||||||||||
Sbjct: 158161 cattgtaatcttattaaaaca 158181
to top
>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07,
             complete sequence
          Length = 179021

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 308   ccgcttccagtaccagtgctt 328
             |||||||||||||||||||||
Sbjct: 36221 ccgcttccagtaccagtgctt 36201
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 308      ccgcttccagtaccagtgctt 328
                |||||||||||||||||||||
Sbjct: 22594121 ccgcttccagtaccagtgctt 22594101
to top
>gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromosome 18, complete
            sequence
          Length = 195115

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 341  ccatatctcctcgatgggca 360
            ||||||||||||||||||||
Sbjct: 2496 ccatatctcctcgatgggca 2477
to top
>gb|AC122370.4| Mus musculus BAC clone RP23-459B8 from chromosome 8, complete sequence
          Length = 176045

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   agcatctgattctgatgtgg 228
             ||||||||||||||||||||
Sbjct: 76854 agcatctgattctgatgtgg 76873
to top
>emb|BX649118.1|HSM809270 Homo sapiens mRNA; cDNA DKFZp686J0529 (from clone DKFZp686J0529)
          Length = 6098

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  ccatatctcctcgatgggca 360
            ||||||||||||||||||||
Sbjct: 3430 ccatatctcctcgatgggca 3449
to top
>ref|XM_932259.1| PREDICTED: Homo sapiens hypothetical protein DKFZp686J0529,
            transcript variant 2 (DKFZp686J0529), mRNA
          Length = 6079

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  ccatatctcctcgatgggca 360
            ||||||||||||||||||||
Sbjct: 3423 ccatatctcctcgatgggca 3442
to top
>gb|AC023754.3|AC023754 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence,
            complete sequence
          Length = 100685

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   aactcgtaagaactaagaac 104
            ||||||||||||||||||||
Sbjct: 2186 aactcgtaagaactaagaac 2205
to top
>gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence
          Length = 129547

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aactcgtaagaactaagaac 104
             ||||||||||||||||||||
Sbjct: 99693 aactcgtaagaactaagaac 99712
to top
>emb|BX072566.10| Human DNA sequence from clone RP11-25L22 on chromosome 22, complete
              sequence
          Length = 164239

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    ccatatctcctcgatgggca 360
              ||||||||||||||||||||
Sbjct: 106728 ccatatctcctcgatgggca 106709
to top
>dbj|BS000002.1| Pan troglodytes chromosome 22 clone:PTB-056N14, map 22, complete
             sequences
          Length = 168180

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   ccatatctcctcgatgggca 360
             ||||||||||||||||||||
Sbjct: 17539 ccatatctcctcgatgggca 17558
to top
>dbj|AP006261.1| Homo sapiens genomic DNA, chromosome 18, clone:CTD-2594A10, complete
              sequence
          Length = 189276

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    ccatatctcctcgatgggca 360
              ||||||||||||||||||||
Sbjct: 121062 ccatatctcctcgatgggca 121043
to top
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 259     tttcctggcgttggtggtgt 278
               ||||||||||||||||||||
Sbjct: 4683523 tttcctggcgttggtggtgt 4683504
to top
>emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    ccatatctcctcgatgggca 360
              ||||||||||||||||||||
Sbjct: 338128 ccatatctcctcgatgggca 338147
to top
>dbj|AP005670.1| Homo sapiens genomic DNA, chromosome 18 clone:RP11-72P4, complete
              sequence
          Length = 184770

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    ccatatctcctcgatgggca 360
              ||||||||||||||||||||
Sbjct: 105405 ccatatctcctcgatgggca 105386
to top
>dbj|AP001465.1| Homo sapiens genomic DNA, chromosome 21q11.1, clone:B663H15, centromere
              region, complete sequence
          Length = 104785

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    ccatatctcctcgatgggca 360
              ||||||||||||||||||||
Sbjct: 100613 ccatatctcctcgatgggca 100632


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,564,672
Number of Sequences: 3902068
Number of extensions: 2564672
Number of successful extensions: 42975
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42727
Number of HSP's gapped (non-prelim): 248
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top