ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN566_PANTR (Q6J6I6) Zinc finger protein 566 29 3.0
2ZN566_HUMAN (Q969W8) Zinc finger protein 566 29 3.0
3DXR_PSEU2 (Q4ZWS2) 1-deoxy-D-xylulose 5-phosphate reductoisomera... 28 6.8

>ZN566_PANTR (Q6J6I6) Zinc finger protein 566|
          Length = 418

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 9   YRKSTLGLSHHSFHTNHQPKSFEELRQQTNY 101
           Y +S+  +SHH  HT+ +P  + E  +  NY
Sbjct: 376 YSQSSQLISHHRIHTSEKPYEYRECGKNFNY 406



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>ZN566_HUMAN (Q969W8) Zinc finger protein 566|
          Length = 418

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 9   YRKSTLGLSHHSFHTNHQPKSFEELRQQTNY 101
           Y +S+  +SHH  HT+ +P  + E  +  NY
Sbjct: 376 YSQSSQLISHHRIHTSEKPYEYRECGKNFNY 406



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>DXR_PSEU2 (Q4ZWS2) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 396

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 135 HLPVTSVEFCACNLFVVSTLQNSLAGDWYERNG 37
           H PVT+VE     +F        LAG W+ER+G
Sbjct: 364 HEPVTAVEGLEA-VFAADAKARLLAGQWFERHG 395


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,431,368
Number of Sequences: 219361
Number of extensions: 370729
Number of successful extensions: 1129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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