>gb|AC106776.4| Homo sapiens chromosome 5 clone RP11-325M13, complete sequence
          Length = 114419

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 122   gtcacaggtaggtgacctcaccagtg 147
             ||||||||||||||||||||| ||||
Sbjct: 50708 gtcacaggtaggtgacctcacaagtg 50733

>gb|AC087361.5| Homo sapiens chromosome 8, clone RP11-494N20, complete sequence
          Length = 164536

 Score = 42.1 bits (21), Expect = 0.55
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 66    aagagttttgaagagttgaga 86
             |||||||||||||||||||||
Sbjct: 61688 aagagttttgaagagttgaga 61668

>emb|AJ300468.1|BTA300468 Bos taurus partial ed1 gene for Ectodysplasin 1, exon 1 and joined
            cds
          Length = 9596

 Score = 42.1 bits (21), Expect = 0.55
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 121  agtcacaggtaggtgacctca 141
            |||||||||||||||||||||
Sbjct: 9502 agtcacaggtaggtgacctca 9522

>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence
          Length = 161199

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    tttgaagagttgagacaaca 91
             ||||||||||||||||||||
Sbjct: 82892 tttgaagagttgagacaaca 82911

>emb|AL591175.6| Zebrafish DNA sequence from clone BUSM1-37I06 in linkage group 8
             Contains four novel genes for a protein similar to MHC
             class II alpha chain proteins, the novel retrotransposon
             SUSHIIDR1 similar to SUSHI-ICHI (Fugu rubripes), a
             putative novel gene, a novel gene for a protein similar to
             MHC class I heavy chain proteins and two novel genes for a
             protein similar toMHC class II beta chain, complete
             sequence
          Length = 89232

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    agagttgagacaacaaacaa 96
             ||||||||||||||||||||
Sbjct: 23982 agagttgagacaacaaacaa 24001

>gb|AC012070.8| Homo sapiens BAC clone RP11-318K6 from 2, complete sequence
          Length = 149776

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    aagagttttgaagagttgag 85
             ||||||||||||||||||||
Sbjct: 26671 aagagttttgaagagttgag 26652

>emb|AL732628.18| Zebrafish DNA sequence from clone CH211-144F18 in linkage group 19,
             complete sequence
          Length = 174130

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 147   gcgaaaactaacgtgcacaaacaa 170
             |||||||||||| |||||||||||
Sbjct: 31065 gcgaaaactaacatgcacaaacaa 31042

>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete
             sequence
          Length = 209560

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    tttgaagagttgagacaaca 91
             ||||||||||||||||||||
Sbjct: 61488 tttgaagagttgagacaaca 61507

>gb|AC161376.2| Mus musculus BAC clone RP23-264M10 from chromosome 16, complete
             sequence
          Length = 199086

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 118   ggaagtcacaggtaggtga 136
             |||||||||||||||||||
Sbjct: 64969 ggaagtcacaggtaggtga 64987

>gb|AE013199.1| Thermoanaerobacter tengcongensis MB4, section 226 of 244 of the
            complete genome
          Length = 13138

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 28   gcttaagccaccattcctttcatacca 54
            |||||| | ||||||||||||||||||
Sbjct: 1318 gcttaaacaaccattcctttcatacca 1292

>gb|AC129296.2| Mus musculus BAC clone RP24-574O8 from chromosome 3, complete sequence
          Length = 149793

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 54     aatcaccagccaaagagtt 72
              |||||||||||||||||||
Sbjct: 117140 aatcaccagccaaagagtt 117158

>gb|AC127036.3| Mus musculus BAC clone RP23-39I4 from chromosome 3, complete sequence
          Length = 190168

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 54   aatcaccagccaaagagtt 72
            |||||||||||||||||||
Sbjct: 9447 aatcaccagccaaagagtt 9465

>gb|AC018557.9| Homo sapiens chromosome 16 clone RP11-63M22, complete sequence
          Length = 180709

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 68     gagttttgaagagttgaga 86
              |||||||||||||||||||
Sbjct: 107376 gagttttgaagagttgaga 107394

>gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 155235

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    gttttgaagagttgagaca 88
             |||||||||||||||||||
Sbjct: 76368 gttttgaagagttgagaca 76350

>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains part
              of the gene for a novel protein (likely ortholog to homo
              sapiens FLJ38335), complete sequence
          Length = 198148

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 46     ttcataccaatcaccagcc 64
              |||||||||||||||||||
Sbjct: 123352 ttcataccaatcaccagcc 123370

>gb|AC157350.29| Medicago truncatula clone mth2-143n6, complete sequence
          Length = 131960

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    aacaaacaaattacacgcg 106
             |||||||||||||||||||
Sbjct: 25031 aacaaacaaattacacgcg 25049

>emb|BX276185.11| Zebrafish DNA sequence from clone CH211-276M23, complete sequence
          Length = 157119

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     cataccaatcaccagccaa 66
              |||||||||||||||||||
Sbjct: 105791 cataccaatcaccagccaa 105773

>dbj|AB058956.2| Nicotiana sylvestris NsRpoT-A gene for T7 bacteriophage-type single
             subunit RNA polymerase, complete cds
          Length = 21375

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    agttgagacaacaaacaaa 97
             |||||||||||||||||||
Sbjct: 10320 agttgagacaacaaacaaa 10302

>gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, complete sequence
          Length = 196085

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 64     caaagagttttgaagagttgaga 86
              |||||| ||||||||||||||||
Sbjct: 152841 caaagaattttgaagagttgaga 152819

>gb|AC171684.1| Mus musculus BAC clone RP23-69D21 from chromosome 8, complete sequence
          Length = 255017

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 44     ctttcataccaatcaccagccaa 66
              |||||| ||||||||||||||||
Sbjct: 198825 ctttcacaccaatcaccagccaa 198803


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,691,427
Number of Sequences: 3902068
Number of extensions: 1691427
Number of successful extensions: 120704
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120658
Number of HSP's gapped (non-prelim): 46
length of query: 176
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 154
effective length of database: 17,147,199,772
effective search space: 2640668764888
effective search space used: 2640668764888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)