ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59a01 |
|---|---|
| Clone Library Name | barley_pub |
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein LINE-1 (Long| interspersed element-1) (L1) [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1281 Score = 35.0 bits (79), Expect = 0.075 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -3 Query: 129 IPDGVNSTSIALVPKIPNH-VKISNYRPISLCNVIYKIISKCL 4 +P+ +I L+PK KI N+RPISL N+ KI++K L Sbjct: 512 LPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKIL 554
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog| Length = 1259 Score = 34.3 bits (77), Expect = 0.13 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -3 Query: 132 IIPDGVNSTSIALVPKIPNHV-KISNYRPISLCNVIYKIISKCL 4 I+P+ SI L+PK K N+RPISL N+ KI++K L Sbjct: 503 ILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKIL 546
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog| Length = 1260 Score = 33.5 bits (75), Expect = 0.22 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -3 Query: 132 IIPDGVNSTSIALVPKI-PNHVKISNYRPISLCNVIYKIISKCL 4 I+P+ +I L+PK + + NYRPISL N+ KI++K L Sbjct: 503 ILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKIL 546
>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein (ORF 2)| Length = 1308 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = -3 Query: 129 IPDGVNSTSIALVPKIPNHVKISNYRPISLCNVIYKIISKCL 4 +P ++L+PK + I N+RP+SL + YKI++K + Sbjct: 501 LPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAI 542
>ZEST_DROSI (P67856) Regulatory protein zeste (Fragment)| Length = 268 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 12/50 (24%) Frame = +1 Query: 28 YDIAQTYRPVIRDLN------------MIRNFWNESNRGRVYPIRDNSST 141 Y + +T+ +++D N I+ FW S + YP RD SS+ Sbjct: 31 YSVRETWDKIVKDFNSHPHVSAMRNIKQIQKFWLNSRLRKQYPYRDGSSS 80
>ZEST_DROSE (P67855) Regulatory protein zeste (Fragment)| Length = 268 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 12/50 (24%) Frame = +1 Query: 28 YDIAQTYRPVIRDLN------------MIRNFWNESNRGRVYPIRDNSST 141 Y + +T+ +++D N I+ FW S + YP RD SS+ Sbjct: 31 YSVRETWDKIVKDFNSHPHVSAMRNIKQIQKFWLNSRLRKQYPYRDGSSS 80
>ZEST_DROME (P09956) Regulatory protein zeste| Length = 574 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 12/50 (24%) Frame = +1 Query: 28 YDIAQTYRPVIRDLN------------MIRNFWNESNRGRVYPIRDNSST 141 Y + +T+ +++D N I+ FW S + YP RD SS+ Sbjct: 86 YSVRETWDKIVKDFNSHPHVSAMRNIKQIQKFWLNSRLRKQYPYRDGSSS 135
>ZEST_DROMA (P67854) Regulatory protein zeste (Fragment)| Length = 268 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 12/50 (24%) Frame = +1 Query: 28 YDIAQTYRPVIRDLN------------MIRNFWNESNRGRVYPIRDNSST 141 Y + +T+ +++D N I+ FW S + YP RD SS+ Sbjct: 31 YSVRETWDKIVKDFNSHPHVSAMRNIKQIQKFWLNSRLRKQYPYRDGSSS 80
>NADB_STRCO (Q9X8N8) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate| synthetase B) Length = 580 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 214 LIASHFLKSLWETKKPSVKAAMPTATTSLFFLAMSIAPSAHFRS 345 L A HF +++WE + P++ AA + +AP+AH+ S Sbjct: 318 LDARHFGRTMWEHRFPTILAACRAHGIDPVTEPVPVAPAAHYAS 361
>SYC_UREPA (Q9PR21) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 436 Score = 28.9 bits (63), Expect = 5.4 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -3 Query: 90 PKIPNHVKISNYRPISLCNVIYKIISK 10 P + NH+ I N RP+ +V+Y+ + K Sbjct: 26 PTVYNHIHIGNARPLITMDVLYRFLKK 52
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type-1| retrotransposable element R2 (Retrovirus-related Pol polyprotein from type I retrotransposable element R2) [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment) Length = 869 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -3 Query: 129 IPDGVNSTSIALVPKIPNHVKISNYRPISLCNVIYKIISKCL 4 +P + + PKI +RP+S+C+VI + +K L Sbjct: 206 VPSPIKGSRTVFTPKIEGGPDPGVFRPLSICSVILREFNKIL 247
>UCKL1_HUMAN (Q9NWZ5) Uridine/cytidine kinase-like 1| Length = 548 Score = 28.5 bits (62), Expect = 7.1 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Frame = +1 Query: 64 DLNMIRNFWNE-SNRGR-VYPIRDNSSTF*PRNTSHYILPTVRVCDIVILH--------S 213 D+ ++R + S RGR + + + F + YI PT+R+ DIV+ Sbjct: 231 DIRLVRRLRRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMRLADIVVPRGSGNTVAID 290 Query: 214 LIASHFLKSLWETKKPSVKAAMPTA 288 LI H + S E ++ SV+AA+ +A Sbjct: 291 LIVQH-VHSQLEERELSVRAALASA 314
>ZEST_DROVI (Q24762) Regulatory protein zeste| Length = 618 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 12/50 (24%) Frame = +1 Query: 28 YDIAQTYRPVIRDLN------------MIRNFWNESNRGRVYPIRDNSST 141 Y + T+ ++RD N I+ FW S + YP RD S++ Sbjct: 105 YSVRDTWDKIVRDFNSHPHVSAMRNIKQIQKFWLNSRLRKQYPYRDGSAS 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,920,048 Number of Sequences: 219361 Number of extensions: 762512 Number of successful extensions: 2311 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2282 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2311 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
