>ref|XM_476017.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 945

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 242 tgtgggagacgaagaagccgagtgtgaaggcggcgatgccgacggccaccacctccttgt 301
           |||||||||||||||||||||| | ||||||||||| | ||  ||| |  || |||||||
Sbjct: 925 tgtgggagacgaagaagccgagggagaaggcggcgacggcggtggcgatgacatccttgt 866

                                              
Query: 302 tcttcctcgccatgtccattgcgccctccgcccac 336
           || |||||||| | ||||   ||||||||||||||
Sbjct: 865 tcctcctcgccgtctccaccacgccctccgcccac 831

>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 242   tgtgggagacgaagaagccgagtgtgaaggcggcgatgccgacggccaccacctccttgt 301
             |||||||||||||||||||||| | ||||||||||| | ||  ||| |  || |||||||
Sbjct: 54016 tgtgggagacgaagaagccgagggagaaggcggcgacggcggtggcgatgacatccttgt 53957

                                                
Query: 302   tcttcctcgccatgtccattgcgccctccgcccac 336
             || |||||||| | ||||   ||||||||||||||
Sbjct: 53956 tcctcctcgccgtctccaccacgccctccgcccac 53922

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 242      tgtgggagacgaagaagccgagtgtgaaggcggcgatgccgacggccaccacctccttgt 301
                |||||||||||||||||||||| | ||||||||||| | ||  ||| |  || |||||||
Sbjct: 29275359 tgtgggagacgaagaagccgagggagaaggcggcgacggcggtggcgatgacatccttgt 29275300

                                                   
Query: 302      tcttcctcgccatgtccattgcgccctccgcccac 336
                || |||||||| | ||||   ||||||||||||||
Sbjct: 29275299 tcctcctcgccgtctccaccacgccctccgcccac 29275265

>ref|NM_192552.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 810

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 246 ggagacgaagaagccgagtgtgaaggcggcgatgccgacggccaccacctccttgttctt 305
           ||||||||||| |||||||| ||| ||||||| | |   ||| |||||||||||||||||
Sbjct: 783 ggagacgaagacgccgagtgcgaacgcggcgacggccgtggcgaccacctccttgttctt 724

             
Query: 306 cc 307
           ||
Sbjct: 723 cc 722

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                            
Query: 246      ggagacgaagaagccgagtgtgaaggcggcgatgccgacggccaccacctccttgttctt 305
                ||||||||||| |||||||| ||| ||||||| | |   ||| |||||||||||||||||
Sbjct: 22897304 ggagacgaagacgccgagtgcgaacgcggcgacggccgtggcgaccacctccttgttctt 22897363

                  
Query: 306      cc 307
                ||
Sbjct: 22897364 cc 22897365

>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0700A11
          Length = 136321

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                          
Query: 246    ggagacgaagaagccgagtgtgaaggcggcgatgccgacggccaccacctccttgttctt 305
              ||||||||||| |||||||| ||| ||||||| | |   ||| |||||||||||||||||
Sbjct: 100861 ggagacgaagacgccgagtgcgaacgcggcgacggccgtggcgaccacctccttgttctt 100920

                
Query: 306    cc 307
              ||
Sbjct: 100921 cc 100922

>dbj|AK109917.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D11, full
           insert sequence
          Length = 1072

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 246 ggagacgaagaagccgagtgtgaaggcggcgatgccgacggccaccacctccttgttctt 305
           ||||||||||| |||||||| ||| ||||||| | |   ||| |||||||||||||||||
Sbjct: 946 ggagacgaagacgccgagtgcgaacgcggcgacggccgtggcgaccacctccttgttctt 887

             
Query: 306 cc 307
           ||
Sbjct: 886 cc 885

>gb|DQ229202.1| Phytophthora ramorum elicitin-like protein RAL1A gene, complete cds
          Length = 594

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 393 cgccgtggccgccgccttcttct 415
           |||||||||||||||||||||||
Sbjct: 570 cgccgtggccgccgccttcttct 592

>dbj|AB232152.2| Chlamydomonas reinhardtii DHC9 mRNA for dynein heavy chain 9,
           complete cds
          Length = 13205

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 383 agccgttgcacgccgtggccgccgcc 408
           ||||||||| ||||||||||||||||
Sbjct: 704 agccgttgcgcgccgtggccgccgcc 679

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 393    cgccgtggccgccgccttcttc 414
              ||||||||||||||||||||||
Sbjct: 563424 cgccgtggccgccgccttcttc 563445

>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 393    cgccgtggccgccgccttcttctcctgct 421
              |||| |||||||||||||| |||||||||
Sbjct: 212269 cgccttggccgccgccttcatctcctgct 212297

>dbj|AB052895.1| Myrmecia croslandi genes for 18S rRNA, 5.8S rRNA, 28S rRNA
          Length = 5480

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 398 tggccgccgccttcttctcct 418
           |||||||||||||||||||||
Sbjct: 311 tggccgccgccttcttctcct 291

>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940135D9, complete sequence
          Length = 93659

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 270   ggcggcgatgccgacggccaccac 293
             |||||||||||||| |||||||||
Sbjct: 90025 ggcggcgatgccgatggccaccac 90002

>ref|XM_582206.2| PREDICTED: Bos taurus similar to transcriptional regulating factor 1
            (LOC505848), mRNA
          Length = 3747

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 406  gccttcttctcctgctccgc 425
            ||||||||||||||||||||
Sbjct: 3197 gccttcttctcctgctccgc 3178

>gb|AC024256.16| Homo sapiens 3 BAC RP11-214P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92009

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     actttgagataattttatat 28
             ||||||||||||||||||||
Sbjct: 66141 actttgagataattttatat 66122

>gb|AC109341.7| Homo sapiens chromosome 11, clone CTD-2504M7, complete sequence
          Length = 202761

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    taattttatatatgacattg 37
             ||||||||||||||||||||
Sbjct: 35431 taattttatatatgacattg 35412

>gb|AC116156.3| Homo sapiens chromosome 11, clone RP11-44D14, complete sequence
          Length = 176597

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     taattttatatatgacattg 37
              ||||||||||||||||||||
Sbjct: 122800 taattttatatatgacattg 122781

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 23      ttatatatgacattgcacaaactt 46
               |||||||||||| |||||||||||
Sbjct: 1418799 ttatatatgacagtgcacaaactt 1418822

>gb|AF464906.1| Glycine max repressor protein (Dr1) mRNA, complete cds
          Length = 885

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 287 ccaccacctccttgttcttc 306
           ||||||||||||||||||||
Sbjct: 82  ccaccacctccttgttcttc 101

>gb|AC149038.2| Medicago truncatula chromosome 7 BAC clone mth2-29a5, complete sequence
          Length = 136566

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    taacatgattaggaattttt 88
             ||||||||||||||||||||
Sbjct: 24599 taacatgattaggaattttt 24580

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 69       taacatgattaggaattttt 88
                ||||||||||||||||||||
Sbjct: 26005015 taacatgattaggaattttt 26004996

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 272     cggcgatgccgacggccacc 291
               ||||||||||||||||||||
Sbjct: 3338265 cggcgatgccgacggccacc 3338246

>gb|AY106368.1| Zea mays PCO142961 mRNA sequence
          Length = 774

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 392 acgccgtggccgccgccttc 411
           ||||||||||||||||||||
Sbjct: 160 acgccgtggccgccgccttc 179

>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
             complete sequence
          Length = 163039

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    taacatgattaggaattttt 88
             ||||||||||||||||||||
Sbjct: 39342 taacatgattaggaattttt 39323

>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13,
              complete sequence
          Length = 139226

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     taacatgattaggaattttt 88
              ||||||||||||||||||||
Sbjct: 131277 taacatgattaggaattttt 131258

>gb|AC139761.4| Mus musculus BAC clone RP23-223C23 from 6, complete sequence
          Length = 187169

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 286   gccaccacctccttgttcttcctc 309
             |||||||||||||| |||||||||
Sbjct: 92894 gccaccacctccttcttcttcctc 92917

>gb|AC131574.4| Homo sapiens chromosome 11, clone RP11-957H15, complete sequence
          Length = 166214

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     taattttatatatgacattg 37
              ||||||||||||||||||||
Sbjct: 138027 taattttatatatgacattg 138008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,896,243
Number of Sequences: 3902068
Number of extensions: 3896243
Number of successful extensions: 109184
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108815
Number of HSP's gapped (non-prelim): 362
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)