ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC092117.4| Homo sapiens chromosome 16 clone CTD-2270P14, com... 42 0.54
2gb|AC141586.2| Homo sapiens chromosome 16 clone CTD-3126B10, com... 42 0.54
3gb|AC093517.3| Homo sapiens chromosome 16 clone CTD-2593F12, com... 42 0.54
4gb|AC093525.3| Homo sapiens chromosome 16 clone RP11-20I23, comp... 42 0.54
5gb|U41553.1| Caenorhabditis elegans cosmid ZK1193, complete sequ... 40 2.2
6gb|AY213032.1| Buteo lineatus lineatus mitochondrial NADH dehydr... 40 2.2
7gb|AY213031.1| Buteo lineatus elegans mitochondrial NADH dehydro... 40 2.2
8gb|AY213030.1| Buteo lineatus alleni mitochondrial NADH dehydrog... 40 2.2
9dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 2.2
10gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, compl... 40 2.2
11gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, compl... 38 8.5
12gb|AY747623.1| Influenza A virus (A/swine/Fujian/F1/2001(H5N1)) ... 38 8.5
13gb|AY747615.1| Influenza A virus (A/swine/Fujian/1/2003(H5N1)) p... 38 8.5
14gb|AY651687.1| Influenza A virus (A/Ck/HK/SSP141/2003(H5N1)) pol... 38 8.5
15gb|AY651686.1| Influenza A virus (A/Ck/HK/NT93/2003(H5N1)) polym... 38 8.5
16gb|AC073326.6| Homo sapiens BAC clone RP11-358A10 from 7, comple... 38 8.5
17gb|AC122856.3| Mus musculus BAC clone RP23-121N19 from 3, comple... 38 8.5
18gb|AC124519.2| Mus musculus BAC clone RP23-393I12 from 1, comple... 38 8.5
19emb|AL606463.6| Human DNA sequence from clone RP11-485D21 on chr... 38 8.5
20emb|AL158075.11| Human DNA sequence from clone RP11-348K2 on chr... 38 8.5
21gb|CY010706.1| Influenza A virus (A/New York/625/1996(H3N2)) seg... 38 8.5
22emb|AL669822.10| Mouse DNA sequence from clone RP23-47J12 on chr... 38 8.5
23emb|AL954830.7| Mouse DNA sequence from clone RP23-12A10 on chro... 38 8.5
24gb|AC112498.3| Homo sapiens X BAC RP11-699A7 (Roswell Park Cance... 38 8.5
25gb|AC118562.3| Homo sapiens BAC clone RP11-454O15 from 4, comple... 38 8.5
26gb|AC087636.5| Homo sapiens chromosome 15, clone RP11-469K5, com... 38 8.5
27gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complet... 38 8.5
28gb|AC087633.5| Homo sapiens chromosome 15, clone RP11-255M2, com... 38 8.5
29gb|AC091893.3| Homo sapiens chromosome 5 clone RP11-12P19, compl... 38 8.5
30gb|AC007575.10| Drosophila melanogaster, chromosome 3R, region 8... 38 8.5
31gb|AC098982.7| Rattus norvegicus BAC CH230-46O20 (Children's Ho... 38 8.5
32dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
33gb|AC093735.2| Homo sapiens BAC clone RP11-17E2 from 4, complete... 38 8.5
34gb|AC084457.1|AC084457 Caenorhabditis briggsae cosmid CB032B18, ... 38 8.5
35gb|AC010881.8| Homo sapiens BAC clone RP11-289J14 from 2, comple... 38 8.5
36gb|CY004633.1| Influenza A virus (A/mallard duck/ALB/1012/1979(H... 38 8.5
37gb|CY004496.1| Influenza A virus (A/mallard duck/ALB/965/1979(H1... 38 8.5
38gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, compl... 38 8.5
39emb|AL772218.29| Mouse DNA sequence from clone RP23-129K21 on ch... 38 8.5
40dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
41dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
42gb|AF362832.1| Trypanosoma rangeli isolate AM11 internal transcr... 38 8.5
43emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, compl... 38 8.5
44gb|AE003603.4| Drosophila melanogaster chromosome 3R, section 5 ... 38 8.5
45gb|AC174597.2| Mus musculus BAC clone RP24-418F6 from chromosome... 38 8.5
46emb|AL928648.19| Mouse DNA sequence from clone RP23-379A6 on chr... 38 8.5
47gb|CY006769.1| Influenza A virus (A/Nanjing/49/77(H3N2)) segment... 38 8.5 
>gb|AC092117.4| Homo sapiens chromosome 16 clone CTD-2270P14, complete sequence
          Length = 211606

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    aagagaagagaacacacacaa 42
             |||||||||||||||||||||
Sbjct: 50497 aagagaagagaacacacacaa 50517
to top
>gb|AC141586.2| Homo sapiens chromosome 16 clone CTD-3126B10, complete sequence
          Length = 127397

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     aagagaagagaacacacacaa 42
              |||||||||||||||||||||
Sbjct: 123783 aagagaagagaacacacacaa 123803



 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 22   aagagaagagaacacacacaa 42
            |||||||||||||||||||||
Sbjct: 6289 aagagaagagaacacacacaa 6269
to top
>gb|AC093517.3| Homo sapiens chromosome 16 clone CTD-2593F12, complete sequence
          Length = 160606

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    aagagaagagaacacacacaa 42
             |||||||||||||||||||||
Sbjct: 43917 aagagaagagaacacacacaa 43937
to top
>gb|AC093525.3| Homo sapiens chromosome 16 clone RP11-20I23, complete sequence
          Length = 157518

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    aagagaagagaacacacacaa 42
             |||||||||||||||||||||
Sbjct: 51307 aagagaagagaacacacacaa 51327
to top
>gb|U41553.1| Caenorhabditis elegans cosmid ZK1193, complete sequence
          Length = 33075

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   aaattacaatgagtcaaaaatcaa 162
             ||||||| ||||||||||||||||
Sbjct: 28693 aaattactatgagtcaaaaatcaa 28716
to top
>gb|AY213032.1| Buteo lineatus lineatus mitochondrial NADH dehydrogenase subunit 6
           gene, complete cds; tRNA-Glu gene, and pseudo-control
           region, complete sequence
          Length = 881

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  cacaaacggtacgcccagac 57
           ||||||||||||||||||||
Sbjct: 367 cacaaacggtacgcccagac 386
to top
>gb|AY213031.1| Buteo lineatus elegans mitochondrial NADH dehydrogenase subunit 6
           gene, complete cds; tRNA-Glu gene, and pseudo-control
           region, complete sequence
          Length = 881

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  cacaaacggtacgcccagac 57
           ||||||||||||||||||||
Sbjct: 367 cacaaacggtacgcccagac 386
to top
>gb|AY213030.1| Buteo lineatus alleni mitochondrial NADH dehydrogenase subunit 6
           gene, complete cds; tRNA-Glu gene, and pseudo-control
           region, complete sequence
          Length = 881

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  cacaaacggtacgcccagac 57
           ||||||||||||||||||||
Sbjct: 367 cacaaacggtacgcccagac 386
to top
>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19
          Length = 84129

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   aacacaacaaacacctcgaa 126
             ||||||||||||||||||||
Sbjct: 58252 aacacaacaaacacctcgaa 58271
to top
>gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, complete sequence
          Length = 167628

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   gtcaaaaatcaaactcaagc 170
             ||||||||||||||||||||
Sbjct: 71144 gtcaaaaatcaaactcaagc 71163
to top
>gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, complete sequence
          Length = 268158

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 15    agtaccgaagagaagagaacacacaca 41
             ||||| ||||||||||||| |||||||
Sbjct: 82735 agtacagaagagaagagaaaacacaca 82761
to top
>gb|AY747623.1| Influenza A virus (A/swine/Fujian/F1/2001(H5N1)) polymerase PB1
           (PB1) gene, complete cds
          Length = 2341

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  caggatacacaatggacac 94
           |||||||||||||||||||
Sbjct: 131 caggatacacaatggacac 149
to top
>gb|AY747615.1| Influenza A virus (A/swine/Fujian/1/2003(H5N1)) polymerase PB1
           (PB1) gene, complete cds
          Length = 2341

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  caggatacacaatggacac 94
           |||||||||||||||||||
Sbjct: 131 caggatacacaatggacac 149
to top
>gb|AY651687.1| Influenza A virus (A/Ck/HK/SSP141/2003(H5N1)) polymerase basic
           subunit 1 (PB1) gene, partial cds
          Length = 1472

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  caggatacacaatggacac 94
           |||||||||||||||||||
Sbjct: 107 caggatacacaatggacac 125
to top
>gb|AY651686.1| Influenza A virus (A/Ck/HK/NT93/2003(H5N1)) polymerase basic
           subunit 1 (PB1) gene, partial cds
          Length = 1472

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  caggatacacaatggacac 94
           |||||||||||||||||||
Sbjct: 107 caggatacacaatggacac 125
to top
>gb|AC073326.6| Homo sapiens BAC clone RP11-358A10 from 7, complete sequence
          Length = 160629

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    agagaagagaacacacaca 41
             |||||||||||||||||||
Sbjct: 38693 agagaagagaacacacaca 38675
to top
>gb|AC122856.3| Mus musculus BAC clone RP23-121N19 from 3, complete sequence
          Length = 187311

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   ctagacagataaattacaa 147
             |||||||||||||||||||
Sbjct: 35322 ctagacagataaattacaa 35340
to top
>gb|AC124519.2| Mus musculus BAC clone RP23-393I12 from 1, complete sequence
          Length = 195739

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    attcaggatacacaatgga 91
             |||||||||||||||||||
Sbjct: 72160 attcaggatacacaatgga 72178
to top
>emb|AL606463.6| Human DNA sequence from clone RP11-485D21 on chromosome 1 Contains the 5'
              end of a novel gene, complete sequence
          Length = 159304

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 135    agataaattacaatgagtc 153
              |||||||||||||||||||
Sbjct: 147015 agataaattacaatgagtc 146997
to top
>emb|AL158075.11| Human DNA sequence from clone RP11-348K2 on chromosome 9q33.1-34.13
             Contains two novel genes and part of the NR6A1 gene for
             nuclear receptor (subfamily 6, group A) member 1, complete
             sequence
          Length = 102867

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 130   tagacagataaattacaat 148
             |||||||||||||||||||
Sbjct: 37948 tagacagataaattacaat 37930
to top
>gb|CY010706.1| Influenza A virus (A/New York/625/1996(H3N2)) segment 2, complete
           sequence
          Length = 2309

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  caggatacacaatggacac 94
           |||||||||||||||||||
Sbjct: 119 caggatacacaatggacac 137
to top
>emb|AL669822.10| Mouse DNA sequence from clone RP23-47J12 on chromosome 11 Contains the
             5' end of the Cobl gene for cordon-bleu and a CpG island,
             complete sequence
          Length = 137869

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 123   cgaactctagacagataaa 141
             |||||||||||||||||||
Sbjct: 55978 cgaactctagacagataaa 55960
to top
>emb|AL954830.7| Mouse DNA sequence from clone RP23-12A10 on chromosome 11 Contains the
             3' end of the Car10 gene for carbonic anhydrase 10,
             complete sequence
          Length = 109889

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    cgaagagaagagaacacac 38
             |||||||||||||||||||
Sbjct: 14337 cgaagagaagagaacacac 14355
to top
>gb|AC112498.3| Homo sapiens X BAC RP11-699A7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 175559

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 150   agtcaaaaatcaaactcaa 168
             |||||||||||||||||||
Sbjct: 67478 agtcaaaaatcaaactcaa 67496
to top
>gb|AC118562.3| Homo sapiens BAC clone RP11-454O15 from 4, complete sequence
          Length = 178014

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 137   ataaattacaatgagtcaaaaat 159
             |||||||| ||||||||||||||
Sbjct: 92374 ataaattaaaatgagtcaaaaat 92396
to top
>gb|AC087636.5| Homo sapiens chromosome 15, clone RP11-469K5, complete sequence
          Length = 143410

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 130  tagacagataaattacaat 148
            |||||||||||||||||||
Sbjct: 8081 tagacagataaattacaat 8099
to top
>gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complete sequence
          Length = 138604

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    gaagagaacacacacaaac 44
             |||||||||||||||||||
Sbjct: 88141 gaagagaacacacacaaac 88123
to top
>gb|AC087633.5| Homo sapiens chromosome 15, clone RP11-255M2, complete sequence
          Length = 179163

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 130    tagacagataaattacaat 148
              |||||||||||||||||||
Sbjct: 164883 tagacagataaattacaat 164901
to top
>gb|AC091893.3| Homo sapiens chromosome 5 clone RP11-12P19, complete sequence
          Length = 154364

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    agaagagaacacacacaaa 43
             |||||||||||||||||||
Sbjct: 39351 agaagagaacacacacaaa 39369
to top
>gb|AC007575.10| Drosophila melanogaster, chromosome 3R, region 82F-83A, BAC clone
             BACR42H10, complete sequence
          Length = 181009

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   atatgaacacaacaaacac 120
             |||||||||||||||||||
Sbjct: 52996 atatgaacacaacaaacac 53014
to top
>gb|AC098982.7| Rattus norvegicus  BAC CH230-46O20 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 227790

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    gatagattcaggatacaca 86
             |||||||||||||||||||
Sbjct: 64793 gatagattcaggatacaca 64775
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 25      agaagagaacacacacaaa 43
               |||||||||||||||||||
Sbjct: 3590087 agaagagaacacacacaaa 3590105
to top
>gb|AC093735.2| Homo sapiens BAC clone RP11-17E2 from 4, complete sequence
          Length = 111389

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 146   aatgagtcaaaaatcaaactcaa 168
             ||||| |||||||||||||||||
Sbjct: 39453 aatgattcaaaaatcaaactcaa 39431
to top
>gb|AC084457.1|AC084457 Caenorhabditis briggsae cosmid CB032B18, complete sequence
          Length = 72221

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 149   gagtcaaaaatcaaactca 167
             |||||||||||||||||||
Sbjct: 37598 gagtcaaaaatcaaactca 37580
to top
>gb|AC010881.8| Homo sapiens BAC clone RP11-289J14 from 2, complete sequence
          Length = 174927

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 143    tacaatgagtcaaaaatca 161
              |||||||||||||||||||
Sbjct: 172235 tacaatgagtcaaaaatca 172217
to top
>gb|CY004633.1| Influenza A virus (A/mallard duck/ALB/1012/1979(H3N4)) segment 2,
           complete sequence
          Length = 2341

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  caggatacacaatggacac 94
           |||||||||||||||||||
Sbjct: 131 caggatacacaatggacac 149
to top
>gb|CY004496.1| Influenza A virus (A/mallard duck/ALB/965/1979(H1N1)) segment 2,
           complete sequence
          Length = 2341

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  caggatacacaatggacac 94
           |||||||||||||||||||
Sbjct: 131 caggatacacaatggacac 149
to top
>gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, complete sequence
          Length = 210315

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 75     tcaggatacacaatggaca 93
              |||||||||||||||||||
Sbjct: 117813 tcaggatacacaatggaca 117831
to top
>emb|AL772218.29| Mouse DNA sequence from clone RP23-129K21 on chromosome 2, complete
             sequence
          Length = 218427

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 113   acaaacacctcgaactcta 131
             |||||||||||||||||||
Sbjct: 84002 acaaacacctcgaactcta 84020
to top
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0577B11
          Length = 180355

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    agaagagaacacacacaaa 43
             |||||||||||||||||||
Sbjct: 68593 agaagagaacacacacaaa 68611
to top
>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0672D01
          Length = 146954

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     agaagagaacacacacaaa 43
              |||||||||||||||||||
Sbjct: 145804 agaagagaacacacacaaa 145822
to top
>gb|AF362832.1| Trypanosoma rangeli isolate AM11 internal transcribed spacer 1,
           5.8S ribosomal RNA gene, and internal transcribed spacer
           2, complete sequence
          Length = 1152

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 27  aagagaacacacacaaacg 45
           |||||||||||||||||||
Sbjct: 717 aagagaacacacacaaacg 699
to top
>emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, complete sequence
          Length = 123091

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 150    agtcaaaaatcaaactcaa 168
              |||||||||||||||||||
Sbjct: 115492 agtcaaaaatcaaactcaa 115510
to top
>gb|AE003603.4| Drosophila melanogaster chromosome 3R, section 5 of 118 of the complete
              sequence
          Length = 265289

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 102    atatgaacacaacaaacac 120
              |||||||||||||||||||
Sbjct: 173836 atatgaacacaacaaacac 173854
to top
>gb|AC174597.2| Mus musculus BAC clone RP24-418F6 from chromosome 6, complete
            sequence
          Length = 188358

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 75   tcaggatacacaatggaca 93
            |||||||||||||||||||
Sbjct: 2971 tcaggatacacaatggaca 2989
to top
>emb|AL928648.19| Mouse DNA sequence from clone RP23-379A6 on chromosome 4, complete
            sequence
          Length = 90837

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 134  cagataaattacaatgagtcaaaaatc 160
            |||| ||||||| ||||||||||||||
Sbjct: 5827 cagaaaaattaccatgagtcaaaaatc 5853
to top
>gb|CY006769.1| Influenza A virus (A/Nanjing/49/77(H3N2)) segment 2, complete
           sequence
          Length = 2317

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  caggatacacaatggacac 94
           |||||||||||||||||||
Sbjct: 127 caggatacacaatggacac 145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,195,896
Number of Sequences: 3902068
Number of extensions: 2195896
Number of successful extensions: 223703
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 223481
Number of HSP's gapped (non-prelim): 222
length of query: 174
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 152
effective length of database: 17,147,199,772
effective search space: 2606374365344
effective search space used: 2606374365344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top