ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58h09 |
|---|---|
| Clone Library Name | barley_pub |
>ATR_XENLA (Q9DE14) Serine/threonine-protein kinase atr (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein) (Xatr) Length = 2654 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +3 Query: 54 SVPGRSPRLQENRKNHRTKATTHAQLNIT-IFTMPSLNKIIRETLRM 191 + PGRS +Q+ H +A I +F P LN+ + TL++ Sbjct: 966 NTPGRSSEMQKQEATHHREAALDILSEIANVFDFPDLNRFLTRTLQL 1012
>POL2_GCMV (P13026) RNA2 polyprotein (P2) [Contains: P2A protein (2A);| Movement protein (2B-MP); Coat protein (2C-CP)] Length = 1324 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +2 Query: 35 TSSRGVLSSRTFTTLARKQKKSQNK 109 T+S GVLS++TFT L R Q K N+ Sbjct: 539 TTSEGVLSAQTFTVLNRPQFKELNR 563
>Y5100_ANASP (Q8YM40) Hypothetical UPF0192 protein all5100 precursor| Length = 1906 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = +2 Query: 17 GWLGSVTSSRGVLSSRTFTTLARKQKKSQNKSYYTRPAQHNYFHNAITEQDHQGDTEDAL 196 GW G+ SRGV+ S R+ +S K+++T A +Y N + +QD D + L Sbjct: 620 GWQGNKPESRGVIFS------DRQLYQSGEKAWFTGFA--DYLQNGVIQQDKNADYQITL 671
>CP51_CANGA (P50859) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1)| (Sterol 14-alpha-demethylase) (Lanosterol 14-alpha demethylase) (P450-14DM) Length = 533 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +3 Query: 96 NHRTKATTHAQLNITIFTMPSLNKIIRETLRMH 194 N+ TK T+ L MP LN++I+ETLR+H Sbjct: 350 NNDTKELTYDDLQ----NMPLLNQMIKETLRLH 378
>BIR1_SCHPO (O14064) Protein bir1 (Chromosome segregation protein cut17)| Length = 997 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 111 ATTHAQLNITIFTMPSLNKIIRETLRMHSIRPSNP 215 A T+A+ +T +PS+ K + E+ HSI P +P Sbjct: 863 AKTYAEKEVTSINLPSVRKPLDESYYDHSISPFDP 897
>SYFA_CAMJR (Q5HUR1) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 330 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Frame = -3 Query: 303 FHKAYLAKLKDLEP---SDGKKKDANGFSY 223 F++AYLAK KDLE + K+DA F+Y Sbjct: 60 FNEAYLAKFKDLENLALEERMKQDALNFNY 89
>SYFA_CAMJE (Q9PP34) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 330 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Frame = -3 Query: 303 FHKAYLAKLKDLEP---SDGKKKDANGFSY 223 F++AYLAK KDLE + K+DA F+Y Sbjct: 60 FNEAYLAKFKDLENLALEERMKQDALNFNY 89
>CP51_ASHGO (Q759W0) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1)| (Sterol 14-alpha demethylase) (Lanosterol 14-alpha demethylase) (P450-14DM) Length = 529 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/15 (73%), Positives = 14/15 (93%) Frame = +3 Query: 150 MPSLNKIIRETLRMH 194 MP LN++I+ETLRMH Sbjct: 361 MPLLNQVIKETLRMH 375
>NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein| Length = 469 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/56 (25%), Positives = 27/56 (48%) Frame = -2 Query: 289 LSKVEGPGAKRRQEKRCQWIQLCEVGLDGLIECILSVSLMILFSDGIVKIVMLSWA 122 L+++ PG R+ E C+W+ + G + L + + S D +++ SWA Sbjct: 348 LTRLAWPGNVRQLENTCRWLTVMAAGQEVLTQDLPSELFETAIPDNPTQMLPDSWA 403
>CP51_SCHPO (Q09736) Probable cytochrome P450 51 (EC 1.14.13.70) (CYPLI)| (P450-LIA1) (Sterol 14-alpha demethylase) (Lanosterol 14-alpha demethylase) (P450-14DM) Length = 495 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +3 Query: 150 MPSLNKIIRETLRMHSIRPSNPTSHN*IHWHLFSCRRLAPGPSTLLSKP 296 MP LN +I+ETLR+H IH H+ +R P P + + P Sbjct: 336 MPLLNYVIQETLRLHPP----------IHSHMRKVKRDLPVPGSKIVIP 374
>C71BG_ARATH (Q9LTM7) Cytochrome P450 71B16 (EC 1.14.-.-)| Length = 502 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +3 Query: 66 RSPRLQENRKNHRTKATTHAQLNIT---IFTMPSLNKIIRETLRMHSIRP 206 R+P L +N + + + + IT + +P LN +I+ET R+H + P Sbjct: 322 RNPELMKNVQGEIRDSFGNNKERITKEDLNKVPFLNMVIKETFRLHPVAP 371
>CP27A_RAT (P17178) Cytochrome P450 27, mitochondrial precursor (EC| 1.14.13.15) (Cytochrome P-450C27/25) (Sterol 26-hydroxylase) (Sterol 27-hydroxylase) (Vitamin D(3) 25-hydroxylase) (5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol 27-hydroxylase) Length = 533 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +3 Query: 66 RSPRLQENRKNHRTKATTHAQL--NITIFTMPSLNKIIRETLRMHSIRPSN 212 ++P +QE T ++ N MP L +I+ETLR++ + P+N Sbjct: 355 KNPEIQEALHKEVTGVVPFGKVPQNKDFAHMPLLKAVIKETLRLYPVVPTN 405 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,219,861 Number of Sequences: 219361 Number of extensions: 775154 Number of successful extensions: 2261 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2261 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
