ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC127434.1| Mus musculus BAC clone RP23-189J11 from 19, compl... 42 1.0
2gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosom... 40 4.0
3ref|XM_861603.1| PREDICTED: Canis familiaris similar to zinc fin... 40 4.0
4ref|XM_861587.1| PREDICTED: Canis familiaris similar to zinc fin... 40 4.0
5ref|XM_533008.2| PREDICTED: Canis familiaris similar to zinc fin... 40 4.0
6ref|XM_847902.1| PREDICTED: Canis familiaris similar to zinc fin... 40 4.0
7gb|AC146232.2| Pan troglodytes BAC clone RP43-27C6 from 7, compl... 40 4.0
8gb|AC090543.12| Homo sapiens chromosome 15, clone RP11-330L19, c... 40 4.0
9gb|AF078790.1| Caenorhabditis elegans cosmid F36H12, complete se... 40 4.0
10emb|AL160274.9| Human DNA sequence from clone RP11-395N21 on chr... 40 4.0
11emb|CR847979.6| Zebrafish DNA sequence from clone CH211-195H14 i... 40 4.0
12dbj|AK155642.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 4.0
13ref|XM_680024.1| PREDICTED: Danio rerio similar to MLL (LOC55704... 40 4.0
14gb|AC149085.6| Mus musculus BAC clone RP23-191I16 from chromosom... 40 4.0
15emb|AJ457818.1|TLE457818 Tomato yellow leaf curl China virus-ass... 40 4.0
16gb|AC132481.4| Mus musculus BAC clone RP23-14I14 from 17, comple... 40 4.0
17emb|AL670259.6| Mouse DNA sequence from clone RP23-321M16 on chr... 40 4.0

>gb|AC127434.1| Mus musculus BAC clone RP23-189J11 from 19, complete sequence
          Length = 199422

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 141    attttcacaatgccatcactgaaca 165
              |||||||||||||| ||||||||||
Sbjct: 130077 attttcacaatgccttcactgaaca 130101



to top

>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence
          Length = 198336

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     tgcaagaaaacagaaaaaat 98
              ||||||||||||||||||||
Sbjct: 192101 tgcaagaaaacagaaaaaat 192120



to top

>ref|XM_861603.1| PREDICTED: Canis familiaris similar to zinc finger protein 638,
            transcript variant 4 (LOC475799), mRNA
          Length = 6412

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   agaaaaaatcacagaacaaa 109
            ||||||||||||||||||||
Sbjct: 2553 agaaaaaatcacagaacaaa 2572



to top

>ref|XM_861587.1| PREDICTED: Canis familiaris similar to zinc finger protein 638,
            transcript variant 3 (LOC475799), mRNA
          Length = 4614

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   agaaaaaatcacagaacaaa 109
            ||||||||||||||||||||
Sbjct: 2547 agaaaaaatcacagaacaaa 2566



to top

>ref|XM_533008.2| PREDICTED: Canis familiaris similar to zinc finger protein 638,
            transcript variant 1 (LOC475799), mRNA
          Length = 6780

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   agaaaaaatcacagaacaaa 109
            ||||||||||||||||||||
Sbjct: 2857 agaaaaaatcacagaacaaa 2876



to top

>ref|XM_847902.1| PREDICTED: Canis familiaris similar to zinc finger protein 638,
            transcript variant 2 (LOC475799), mRNA
          Length = 6471

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   agaaaaaatcacagaacaaa 109
            ||||||||||||||||||||
Sbjct: 2547 agaaaaaatcacagaacaaa 2566



to top

>gb|AC146232.2| Pan troglodytes BAC clone RP43-27C6 from 7, complete sequence
          Length = 169663

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 80    gcaagaaaacagaaaaaatcacag 103
             |||||||||||| |||||||||||
Sbjct: 78603 gcaagaaaacagtaaaaatcacag 78626



to top

>gb|AC090543.12| Homo sapiens chromosome 15, clone RP11-330L19, complete sequence
          Length = 209421

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    tgcaagaaaacagaaaaaat 98
             ||||||||||||||||||||
Sbjct: 96265 tgcaagaaaacagaaaaaat 96284



to top

>gb|AF078790.1| Caenorhabditis elegans cosmid F36H12, complete sequence
          Length = 43907

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    caagaaaacagaaaaaatca 100
             ||||||||||||||||||||
Sbjct: 37990 caagaaaacagaaaaaatca 37971



to top

>emb|AL160274.9| Human DNA sequence from clone RP11-395N21 on chromosome 9 Contains
            the 3' end of the UNC13 gene for unc-13-like (C.
            elegans)(MUNC13, hmunc13) and the 5' end of a novel gene,
            complete sequence
          Length = 144102

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   aaaacagaaaaaatcacaga 104
            ||||||||||||||||||||
Sbjct: 2182 aaaacagaaaaaatcacaga 2201



to top

>emb|CR847979.6| Zebrafish DNA sequence from clone CH211-195H14 in linkage group 15,
             complete sequence
          Length = 117096

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   attttcacaatgccatcactgaac 164
             |||||||||||| |||||||||||
Sbjct: 90858 attttcacaatgtcatcactgaac 90881



to top

>dbj|AK155642.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730103G09
            product:unclassifiable, full insert sequence
          Length = 2558

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   tgcaagaaaacagaaaaaat 98
            ||||||||||||||||||||
Sbjct: 2007 tgcaagaaaacagaaaaaat 2026



to top

>ref|XM_680024.1| PREDICTED: Danio rerio similar to MLL (LOC557048), mRNA
          Length = 5715

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 141  attttcacaatgccatcactgaac 164
            |||||||||||| |||||||||||
Sbjct: 5435 attttcacaatgtcatcactgaac 5412



to top

>gb|AC149085.6| Mus musculus BAC clone RP23-191I16 from chromosome 7, complete sequence
          Length = 208232

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    catcagggagacactgagga 189
              ||||||||||||||||||||
Sbjct: 176781 catcagggagacactgagga 176762



to top

>emb|AJ457818.1|TLE457818 Tomato yellow leaf curl China virus-associated DNA beta complete
           genome, isolate Y87
          Length = 1344

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ttgcaagaaaacagaaaaaa 97
           ||||||||||||||||||||
Sbjct: 922 ttgcaagaaaacagaaaaaa 941



to top

>gb|AC132481.4| Mus musculus BAC clone RP23-14I14 from 17, complete sequence
          Length = 225031

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 82     aagaaaacagaaaaaatcacagaa 105
              |||||||||||| |||||||||||
Sbjct: 135600 aagaaaacagaataaatcacagaa 135623



to top

>emb|AL670259.6| Mouse DNA sequence from clone RP23-321M16 on chromosome 4, complete
             sequence
          Length = 124565

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   actttgctaagtaagccttg 298
             ||||||||||||||||||||
Sbjct: 42993 actttgctaagtaagccttg 43012


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,752,556
Number of Sequences: 3902068
Number of extensions: 3752556
Number of successful extensions: 70624
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70599
Number of HSP's gapped (non-prelim): 25
length of query: 308
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 286
effective length of database: 17,147,199,772
effective search space: 4904099134792
effective search space used: 4904099134792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top