Clone Name | rbart58h09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC127434.1| Mus musculus BAC clone RP23-189J11 from 19, complete sequence Length = 199422 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 attttcacaatgccatcactgaaca 165 |||||||||||||| |||||||||| Sbjct: 130077 attttcacaatgccttcactgaaca 130101
>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence Length = 198336 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tgcaagaaaacagaaaaaat 98 |||||||||||||||||||| Sbjct: 192101 tgcaagaaaacagaaaaaat 192120
>ref|XM_861603.1| PREDICTED: Canis familiaris similar to zinc finger protein 638, transcript variant 4 (LOC475799), mRNA Length = 6412 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 agaaaaaatcacagaacaaa 109 |||||||||||||||||||| Sbjct: 2553 agaaaaaatcacagaacaaa 2572
>ref|XM_861587.1| PREDICTED: Canis familiaris similar to zinc finger protein 638, transcript variant 3 (LOC475799), mRNA Length = 4614 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 agaaaaaatcacagaacaaa 109 |||||||||||||||||||| Sbjct: 2547 agaaaaaatcacagaacaaa 2566
>ref|XM_533008.2| PREDICTED: Canis familiaris similar to zinc finger protein 638, transcript variant 1 (LOC475799), mRNA Length = 6780 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 agaaaaaatcacagaacaaa 109 |||||||||||||||||||| Sbjct: 2857 agaaaaaatcacagaacaaa 2876
>ref|XM_847902.1| PREDICTED: Canis familiaris similar to zinc finger protein 638, transcript variant 2 (LOC475799), mRNA Length = 6471 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 agaaaaaatcacagaacaaa 109 |||||||||||||||||||| Sbjct: 2547 agaaaaaatcacagaacaaa 2566
>gb|AC146232.2| Pan troglodytes BAC clone RP43-27C6 from 7, complete sequence Length = 169663 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 gcaagaaaacagaaaaaatcacag 103 |||||||||||| ||||||||||| Sbjct: 78603 gcaagaaaacagtaaaaatcacag 78626
>gb|AC090543.12| Homo sapiens chromosome 15, clone RP11-330L19, complete sequence Length = 209421 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tgcaagaaaacagaaaaaat 98 |||||||||||||||||||| Sbjct: 96265 tgcaagaaaacagaaaaaat 96284
>gb|AF078790.1| Caenorhabditis elegans cosmid F36H12, complete sequence Length = 43907 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 caagaaaacagaaaaaatca 100 |||||||||||||||||||| Sbjct: 37990 caagaaaacagaaaaaatca 37971
>emb|AL160274.9| Human DNA sequence from clone RP11-395N21 on chromosome 9 Contains the 3' end of the UNC13 gene for unc-13-like (C. elegans)(MUNC13, hmunc13) and the 5' end of a novel gene, complete sequence Length = 144102 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aaaacagaaaaaatcacaga 104 |||||||||||||||||||| Sbjct: 2182 aaaacagaaaaaatcacaga 2201
>emb|CR847979.6| Zebrafish DNA sequence from clone CH211-195H14 in linkage group 15, complete sequence Length = 117096 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 attttcacaatgccatcactgaac 164 |||||||||||| ||||||||||| Sbjct: 90858 attttcacaatgtcatcactgaac 90881
>dbj|AK155642.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730103G09 product:unclassifiable, full insert sequence Length = 2558 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tgcaagaaaacagaaaaaat 98 |||||||||||||||||||| Sbjct: 2007 tgcaagaaaacagaaaaaat 2026
>ref|XM_680024.1| PREDICTED: Danio rerio similar to MLL (LOC557048), mRNA Length = 5715 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 attttcacaatgccatcactgaac 164 |||||||||||| ||||||||||| Sbjct: 5435 attttcacaatgtcatcactgaac 5412
>gb|AC149085.6| Mus musculus BAC clone RP23-191I16 from chromosome 7, complete sequence Length = 208232 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 catcagggagacactgagga 189 |||||||||||||||||||| Sbjct: 176781 catcagggagacactgagga 176762
>emb|AJ457818.1|TLE457818 Tomato yellow leaf curl China virus-associated DNA beta complete genome, isolate Y87 Length = 1344 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ttgcaagaaaacagaaaaaa 97 |||||||||||||||||||| Sbjct: 922 ttgcaagaaaacagaaaaaa 941
>gb|AC132481.4| Mus musculus BAC clone RP23-14I14 from 17, complete sequence Length = 225031 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 aagaaaacagaaaaaatcacagaa 105 |||||||||||| ||||||||||| Sbjct: 135600 aagaaaacagaataaatcacagaa 135623
>emb|AL670259.6| Mouse DNA sequence from clone RP23-321M16 on chromosome 4, complete sequence Length = 124565 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 actttgctaagtaagccttg 298 |||||||||||||||||||| Sbjct: 42993 actttgctaagtaagccttg 43012 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,752,556 Number of Sequences: 3902068 Number of extensions: 3752556 Number of successful extensions: 70624 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70599 Number of HSP's gapped (non-prelim): 25 length of query: 308 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 286 effective length of database: 17,147,199,772 effective search space: 4904099134792 effective search space used: 4904099134792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)