>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0008H02, complete sequence
          Length = 143438

 Score =  299 bits (151), Expect = 3e-78
 Identities = 223/247 (90%)
 Strand = Plus / Minus

                                                                        
Query: 89   atcatatctcgtccataagctcttggaaagtgtccatggcggacgccggcaggccgagca 148
            |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct: 4802 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 4743

                                                                        
Query: 149  ggacgttgatgctctttctctccttcccgtgcgcgaggaagagtatgacctccttctccg 208
            |||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 4742 ggacgttgatgctcttcctctcctcgccgtgcgcgaggaagaggatgacctccttctccg 4683

                                                                        
Query: 209  gcagcgtgactggcccggacatggccggctcgccccagccgaagtctgcgccgttgaacg 268
            |||||||||| || |||||||| |||||| |||||||||||||||| ||||||| ||| |
Sbjct: 4682 gcagcgtgacggggccggacatcgccggcgcgccccagccgaagtcggcgccgtggaagg 4623

                                                                        
Query: 269  cgagccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtgg 328
            ||||||  |||||||| ||||| |||||||||||||||||||||||||  || ||||| |
Sbjct: 4622 cgagcctggaccacgtcgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcg 4563

                   
Query: 329  cctcgaa 335
            |||||||
Sbjct: 4562 cctcgaa 4556

>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0028G07, complete sequence
          Length = 157463

 Score =  299 bits (151), Expect = 3e-78
 Identities = 223/247 (90%)
 Strand = Plus / Minus

                                                                         
Query: 89    atcatatctcgtccataagctcttggaaagtgtccatggcggacgccggcaggccgagca 148
             |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct: 91119 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 91060

                                                                         
Query: 149   ggacgttgatgctctttctctccttcccgtgcgcgaggaagagtatgacctccttctccg 208
             |||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 91059 ggacgttgatgctcttcctctcctcgccgtgcgcgaggaagaggatgacctccttctccg 91000

                                                                         
Query: 209   gcagcgtgactggcccggacatggccggctcgccccagccgaagtctgcgccgttgaacg 268
             |||||||||| || |||||||| |||||| |||||||||||||||| ||||||| ||| |
Sbjct: 90999 gcagcgtgacggggccggacatcgccggcgcgccccagccgaagtcggcgccgtggaagg 90940

                                                                         
Query: 269   cgagccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtgg 328
             ||||||  |||||||| ||||| |||||||||||||||||||||||||  || ||||| |
Sbjct: 90939 cgagcctggaccacgtcgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcg 90880

                    
Query: 329   cctcgaa 335
             |||||||
Sbjct: 90879 cctcgaa 90873

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  299 bits (151), Expect = 3e-78
 Identities = 223/247 (90%)
 Strand = Plus / Minus

                                                                            
Query: 89       atcatatctcgtccataagctcttggaaagtgtccatggcggacgccggcaggccgagca 148
                |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct: 17497105 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 17497046

                                                                            
Query: 149      ggacgttgatgctctttctctccttcccgtgcgcgaggaagagtatgacctccttctccg 208
                |||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 17497045 ggacgttgatgctcttcctctcctcgccgtgcgcgaggaagaggatgacctccttctccg 17496986

                                                                            
Query: 209      gcagcgtgactggcccggacatggccggctcgccccagccgaagtctgcgccgttgaacg 268
                |||||||||| || |||||||| |||||| |||||||||||||||| ||||||| ||| |
Sbjct: 17496985 gcagcgtgacggggccggacatcgccggcgcgccccagccgaagtcggcgccgtggaagg 17496926

                                                                            
Query: 269      cgagccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtgg 328
                ||||||  |||||||| ||||| |||||||||||||||||||||||||  || ||||| |
Sbjct: 17496925 cgagcctggaccacgtcgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcg 17496866

                       
Query: 329      cctcgaa 335
                |||||||
Sbjct: 17496865 cctcgaa 17496859

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  299 bits (151), Expect = 3e-78
 Identities = 223/247 (90%)
 Strand = Plus / Minus

                                                                            
Query: 89       atcatatctcgtccataagctcttggaaagtgtccatggcggacgccggcaggccgagca 148
                |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct: 17590815 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 17590756

                                                                            
Query: 149      ggacgttgatgctctttctctccttcccgtgcgcgaggaagagtatgacctccttctccg 208
                |||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 17590755 ggacgttgatgctcttcctctcctcgccgtgcgcgaggaagaggatgacctccttctccg 17590696

                                                                            
Query: 209      gcagcgtgactggcccggacatggccggctcgccccagccgaagtctgcgccgttgaacg 268
                |||||||||| || |||||||| |||||| |||||||||||||||| ||||||| ||| |
Sbjct: 17590695 gcagcgtgacggggccggacatcgccggcgcgccccagccgaagtcggcgccgtggaagg 17590636

                                                                            
Query: 269      cgagccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtgg 328
                ||||||  |||||||| ||||| |||||||||||||||||||||||||  || ||||| |
Sbjct: 17590635 cgagcctggaccacgtcgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcg 17590576

                       
Query: 329      cctcgaa 335
                |||||||
Sbjct: 17590575 cctcgaa 17590569

>ref|XM_463664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1329

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 271  agccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtggcc 330
            |||||||||||||  ||||| |||||||||||||||||||||||||  || ||||| |||
Sbjct: 1142 agccgcgaccacgccgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcgcc 1083

                 
Query: 331  tcgaa 335
            |||||
Sbjct: 1082 tcgaa 1078

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                            
Query: 271      agccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtggcc 330
                |||||||||||||  ||||| |||||||||||||||||||||||||  || ||||| |||
Sbjct: 40503016 agccgcgaccacgccgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcgcc 40502957

                     
Query: 331      tcgaa 335
                |||||
Sbjct: 40502956 tcgaa 40502952

>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1033B05
          Length = 138882

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                         
Query: 271   agccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtggcc 330
             |||||||||||||  ||||| |||||||||||||||||||||||||  || ||||| |||
Sbjct: 64640 agccgcgaccacgccgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcgcc 64581

                  
Query: 331   tcgaa 335
             |||||
Sbjct: 64580 tcgaa 64576

>ref|XM_470882.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 456

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                       
Query: 139 aggccgagcaggacgttgatgctctttctctccttcccgtgcgcgaggaaga-gtatgac 197
           ||||| |||| ||| |||||||||||||||||||| ||||||   ||||||| | || ||
Sbjct: 264 aggccaagcaagacattgatgctctttctctccttgccgtgcattaggaagagggatcac 205

                                
Query: 198 ctccttctccggcagcgtgac 218
           ||||||||||  |||||||||
Sbjct: 204 ctccttctccaacagcgtgac 184

>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0087G11, complete sequence
          Length = 169728

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                         
Query: 139   aggccgagcaggacgttgatgctctttctctccttcccgtgcgcgaggaaga-gtatgac 197
             ||||| |||| ||| |||||||||||||||||||| ||||||   ||||||| | || ||
Sbjct: 90404 aggccaagcaagacattgatgctctttctctccttgccgtgcattaggaagagggatcac 90345

                                  
Query: 198   ctccttctccggcagcgtgac 218
             ||||||||||  |||||||||
Sbjct: 90344 ctccttctccaacagcgtgac 90324

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                            
Query: 139      aggccgagcaggacgttgatgctctttctctccttcccgtgcgcgaggaaga-gtatgac 197
                ||||| |||| ||| |||||||||||||||||||| ||||||   ||||||| | || ||
Sbjct: 15960013 aggccaagcaagacattgatgctctttctctccttgccgtgcattaggaagagggatcac 15960072

                                     
Query: 198      ctccttctccggcagcgtgac 218
                ||||||||||  |||||||||
Sbjct: 15960073 ctccttctccaacagcgtgac 15960093

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                            
Query: 139      aggccgagcaggacgttgatgctctttctctccttcccgtgcgcgaggaaga-gtatgac 197
                ||||| |||| ||| |||||||||||||||||||| ||||||   ||||||| | || ||
Sbjct: 15954547 aggccaagcaagacattgatgctctttctctccttgccgtgcattaggaagagggatcac 15954606

                                     
Query: 198      ctccttctccggcagcgtgac 218
                ||||||||||  |||||||||
Sbjct: 15954607 ctccttctccaacagcgtgac 15954627

>emb|AL138715.11| Human DNA sequence from clone RP11-77P19 on chromosome 13 Contains a
             novel zinc finger protein pseudogene, a novel gene, the 5'
             end of a novel gene and a CpG island, complete sequence
          Length = 161183

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 22    aagcacatgcacaataagcata 43
             ||||||||||||||||||||||
Sbjct: 95435 aagcacatgcacaataagcata 95456

>emb|AL163202.2|HS21C002 Homo sapiens chromosome 21 segment HS21C002
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 22     aagcacatgcacaataagcata 43
              ||||||||||||||||||||||
Sbjct: 203765 aagcacatgcacaataagcata 203786

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 275     gcgaccacgtggtgatgagcagcgtc 300
               |||||||||||||||||||| |||||
Sbjct: 3535474 gcgaccacgtggtgatgagctgcgtc 3535449

>gb|AC093787.3| Homo sapiens BAC clone RP11-215P9 from 2, complete sequence
          Length = 86945

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 22   aagcacatgcacaataagcata 43
            ||||||||||||||||||||||
Sbjct: 1587 aagcacatgcacaataagcata 1566

>emb|AJ239321.3|HS133G21 Homo sapiens chromosome 21 sequence from PAC RPCI-1 133G21 map 21q11.1
             region D21S190, complete sequence
          Length = 115546

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 22    aagcacatgcacaataagcata 43
             ||||||||||||||||||||||
Sbjct: 18341 aagcacatgcacaataagcata 18320

>emb|AJ239322.3|HS156L9 Homo sapiens sequence from PAC RPCI-1 156L9, complete sequence
          Length = 111293

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 22     aagcacatgcacaataagcata 43
              ||||||||||||||||||||||
Sbjct: 110884 aagcacatgcacaataagcata 110863

>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster
          Length = 104326

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 275    gcgaccacgtggtgatgagcagcgtc 300
              |||||||||||||||||||| |||||
Sbjct: 102331 gcgaccacgtggtgatgagctgcgtc 102356

>ref|XM_756993.1| Ustilago maydis 521 hypothetical protein (UM05939.1) partial mRNA
          Length = 675

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 290 tgagcagcgtcgacgccagcg 310
           |||||||||||||||||||||
Sbjct: 61  tgagcagcgtcgacgccagcg 41

>gb|AC100263.9| Mus musculus chromosome 19, clone RP23-66K19, complete sequence
          Length = 188435

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     tgaacataaccatactaccaa 23
             |||||||||||||||||||||
Sbjct: 52211 tgaacataaccatactaccaa 52231

>ref|XM_966493.1| PREDICTED: Tribolium castaneum similar to novel putative protein
           similar to YIL091C yeast hypothetical 84 kD protein from
           SGA1-KTR7 (human) - like (LOC660244), mRNA
          Length = 3723

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 291 gagcagcgtcgacgccagcgacggc 315
           ||||||||||| |||||||||||||
Sbjct: 735 gagcagcgtcgccgccagcgacggc 711

>gb|AC149219.4| Mus musculus BAC clone RP24-91L19 from 19, complete sequence
          Length = 205546

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     tgaacataaccatactaccaa 23
             |||||||||||||||||||||
Sbjct: 65926 tgaacataaccatactaccaa 65906

>gb|AC157570.5| Mus musculus BAC clone RP23-105H5 from chromosome 12, complete sequence
          Length = 227238

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   atgctctttctctccttccc 176
             ||||||||||||||||||||
Sbjct: 83055 atgctctttctctccttccc 83074

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     ccgcgaccacgtggtgatga 292
               ||||||||||||||||||||
Sbjct: 1302081 ccgcgaccacgtggtgatga 1302100

>gb|AF421553.1| Squash mild leaf curl virus-[Imperial Valley] SLCV-R B component,
           complete sequence
          Length = 2578

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 280 cacgtggtgatgagcagcgtcgac 303
           |||||||||||||| |||||||||
Sbjct: 608 cacgtggtgatgagaagcgtcgac 631

>emb|AL691458.7| Human DNA sequence from clone RP11-13F15 on chromosome 10, complete
             sequence
          Length = 69133

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   atgctctttctctccttccc 176
             ||||||||||||||||||||
Sbjct: 25408 atgctctttctctccttccc 25389

>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   ccggcaggccgagcaggacg 153
             ||||||||||||||||||||
Sbjct: 28601 ccggcaggccgagcaggacg 28582

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    caggccgagcaggacgttga 157
              ||||||||||||||||||||
Sbjct: 221646 caggccgagcaggacgttga 221627

>gb|AC068535.7| Homo sapiens BAC clone RP11-120M14 from 2, complete sequence
          Length = 176703

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 226  gacatggccggctcgccccagccg 249
            ||||| ||||||||||||||||||
Sbjct: 2197 gacattgccggctcgccccagccg 2174

>gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome 12, complete sequence
          Length = 211561

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    atgctctttctctccttccc 176
              ||||||||||||||||||||
Sbjct: 200621 atgctctttctctccttccc 200640

>gb|DQ285015.1| Squash mild leaf curl virus isolate 4 segment DNA-B, complete
           sequence
          Length = 2588

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 280 cacgtggtgatgagcagcgtcgac 303
           |||||||||||||| |||||||||
Sbjct: 608 cacgtggtgatgagaagcgtcgac 631

>gb|L20240.1|SQLBR1A Squash leaf curl virus movement protein (BR1) gene, complete cds
          Length = 765

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 280 cacgtggtgatgagcagcgtcgac 303
           |||||||||||||| |||||||||
Sbjct: 86  cacgtggtgatgagaagcgtcgac 109


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,184,664
Number of Sequences: 3902068
Number of extensions: 2184664
Number of successful extensions: 45479
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45171
Number of HSP's gapped (non-prelim): 304
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)