ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ORYB_ORYSA (P25777) Oryzain beta chain precursor (EC 3.4.22.-) 56 2e-08
2ORYA_ORYSA (P25776) Oryzain alpha chain precursor (EC 3.4.22.-) 44 7e-05
3CYSPL_LYCES (P20721) Low-temperature-induced cysteine proteinase... 44 1e-04
4RD21A_ARATH (P43297) Cysteine proteinase RD21a precursor (EC 3.4... 37 0.012
5LCE3B_HUMAN (Q5TA77) Late cornified envelope protein 3B (Late en... 30 1.1
6CYSP1_ORYSA (Q7XR52) Cysteine protease 1 precursor (EC 3.4.22.-)... 30 1.1
7RSD1_SCHPO (O13845) RNA-binding protein rsd1 30 1.9
8HUTU_STRCO (Q9KZ75) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 29 2.4
9KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-ass... 28 5.4
10MSRAB_TREPA (O83641) Peptide methionine sulfoxide reductase msrB... 28 5.4
11KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-ass... 28 5.4
12Y1690_HAEIN (P45320) Hypothetical sodium-dependent transporter H... 27 9.3
13MOK11_SCHPO (Q09854) Cell wall alpha-1,3-glucan synthase mok11 (... 27 9.3
14SMOC2_MOUSE (Q8CD91) SPARC-related modular calcium-binding prote... 27 9.3
15PRGR_RABIT (P06186) Progesterone receptor (PR) 27 9.3

>ORYB_ORYSA (P25777) Oryzain beta chain precursor (EC 3.4.22.-)|
          Length = 471

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 27/31 (87%), Positives = 28/31 (90%)
 Frame = -3

Query: 369 VCNIRAGTCSATKNSPLSVKALKRTLAMRNT 277
           VCN RAGTCSA+KNSPLSVKALKRTLA  NT
Sbjct: 434 VCNTRAGTCSASKNSPLSVKALKRTLAKLNT 464



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>ORYA_ORYSA (P25776) Oryzain alpha chain precursor (EC 3.4.22.-)|
          Length = 458

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = -3

Query: 369 VCNIRAGTCSATKNSPLSVKALKRTLAMRN 280
           +CN++ GTC   K+SPL+VKALKRTLA  N
Sbjct: 416 ICNVQQGTCLMAKDSPLAVKALKRTLAKPN 445



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>CYSPL_LYCES (P20721) Low-temperature-induced cysteine proteinase precursor (EC|
           3.4.22.-) (Fragment)
          Length = 346

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = -3

Query: 369 VCNIRAGTCSATKNSPLSVKALKRTLAMRNTA*SRRGKAVS 247
           +CN+R GTCS +K +PL VKA+KR LA    A    GK  S
Sbjct: 305 ICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGGKKSS 345



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>RD21A_ARATH (P43297) Cysteine proteinase RD21a precursor (EC 3.4.22.-) (RD21)|
          Length = 462

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -3

Query: 369 VCNIRAGTCSATKNSPLSVKALKR 298
           VC++  GTC  +KNSP SVKALKR
Sbjct: 424 VCDLDQGTCLLSKNSPFSVKALKR 447



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>LCE3B_HUMAN (Q5TA77) Late cornified envelope protein 3B (Late envelope protein|
           14)
          Length = 95

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
 Frame = +3

Query: 198 CRREKSSTQPHPSIPP*T--PLSLDDFMP-----CYASPGCASKPSRSAGCSWSLSKSQP 356
           C++ +   QP P  P     P S    +P     C   PGC   PS   GC  S  +   
Sbjct: 3   CQQNQQQCQPLPKCPSPKCPPKSSAQCLPPASSCCAPRPGCCGGPSSEGGCCLSHHR--- 59

Query: 357 *CCR 368
            CCR
Sbjct: 60  -CCR 62



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>CYSP1_ORYSA (Q7XR52) Cysteine protease 1 precursor (EC 3.4.22.-) (OsCP1)|
          Length = 490

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 369 VCNIRAGTCSATKNSPLSVK 310
           VCN +A TCS +KNSP +++
Sbjct: 444 VCNAKARTCSKSKNSPYNIR 463



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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +3

Query: 213 SSTQPHPSIPP*TPLSLDD--FMPC---YASPGCASKPSRSAGCSWSLSKSQ 353
           SST  HPS PP  P  L D  F P    Y S G  + P  S G  ++ S  Q
Sbjct: 39  SSTHSHPSNPPPPPTRLHDRSFKPVSKNYESEGRLTPPPVSMGYRYARSSKQ 90



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>HUTU_STRCO (Q9KZ75) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 572

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -2

Query: 316 REGFEAHPGDA*HGMKSSRE 257
           REG EAH GDA HG  ++RE
Sbjct: 549 REGDEAHEGDAAHGSGAARE 568



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>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 270 FMPCYASPGCASKPSRSAGCSWSLSKSQP*CCR 368
           + PC  S GC S   +S+ C  S S+S   CC+
Sbjct: 132 YKPCCCSSGCGSSCCQSSCCKPSCSQSS--CCK 162



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>MSRAB_TREPA (O83641) Peptide methionine sulfoxide reductase msrB/msrA (EC|
           1.8.4.6) [Includes: Peptide methionine sulfoxide
           reductase msrB; Peptide methionine sulfoxide reductase
           msrA (Protein-methionine-S-oxide reductase) (Peptide
           Met(O) reductase)]
          Length = 291

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 185 RFVGVQEGEKLHTAASFYSTLDTAFPRRLHAVLRI 289
           RFV  +EG  L  A  F+ST   A+ RR+  VLR+
Sbjct: 120 RFVAREEGTALFAAGCFWST--EAYFRRVKGVLRV 152



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>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 276 PCYASPGCASKPSRSAGCSWSLSKSQ---P*CCR 368
           PCY S GC S   +S+ C    S++    P CC+
Sbjct: 93  PCYCSSGCGSSCCQSSCCKPCCSQASCCVPICCQ 126



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>Y1690_HAEIN (P45320) Hypothetical sodium-dependent transporter HI1690|
          Length = 457

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +2

Query: 149 YTKAMSGLNFEQRFVGVQEGEKLHTAASFYSTLDTAFPRRLHAVLRIARVRFKAFTLSGL 328
           ++   +G  F   F G+     L T+ + Y  + TA   +L    R+ R +    TLSG+
Sbjct: 308 FSHLWAGKFFAIIFFGLLLIAALTTSITIYEVIITALQEKL----RMCRGKAIVLTLSGI 363

Query: 329 FLVAEQVPALM 361
           FL+   +PA++
Sbjct: 364 FLLG-NIPAIL 373



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>MOK11_SCHPO (Q09854) Cell wall alpha-1,3-glucan synthase mok11 (EC 2.4.1.183)|
          Length = 2397

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 114  CSLYISLLLHVFIVHSSLPFVLVLS 40
            CS+YIS  L  +I+HS +P +  LS
Sbjct: 2009 CSVYISASLFWYILHSLVPNIYALS 2033



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>SMOC2_MOUSE (Q8CD91) SPARC-related modular calcium-binding protein 2 precursor|
           (Secreted modular calcium-binding protein 2) (SMOC-2)
          Length = 447

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 181 TKVCWCAGGRKAPHSRILLFHLRHRFPSTTSCRVTHRQGA 300
           T  CWC      P S   + H   R P + + +V  R+GA
Sbjct: 128 TGYCWCVTPNGRPISGTAVAHKTPRCPGSINEKVPQREGA 167



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>PRGR_RABIT (P06186) Progesterone receptor (PR)|
          Length = 930

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 225 PHPSIPP*TPLSLDDFMPCYASPGCASKPSRSAGCS 332
           P PS+PP  P S        ASPG AS  S S+  S
Sbjct: 422 PPPSLPPRVPSSRPGEAAVAASPGSASVSSSSSSGS 457


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,774,040
Number of Sequences: 219361
Number of extensions: 889324
Number of successful extensions: 2179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2178
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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