Clone Information

BLAST Search Result

Clone Name	rbart58h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_474291.1\| Oryza sativa (japonica cultivar-group), predic...	92	2e-15
2	dbj\|AK109371.2\| Oryza sativa (japonica cultivar-group) cDNA clon...	92	2e-15
3	dbj\|AK099358.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	92	2e-15
4	dbj\|D90407.1\|RICOZB Oryza sativa (japonica cultivar-group) mRNA ...	92	2e-15
5	gb\|AF366556.1\| Oryza sativa saline responsive OSSRIII protein mR...	84	4e-13
6	dbj\|AK073373.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	84	4e-13
7	gb\|AY106278.1\| Zea mays PCO137999 mRNA sequence	82	1e-12
8	emb\|AL606619.3\|OSJN00032 Oryza sativa genomic DNA, chromosome 4,...	62	1e-06
9	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	62	1e-06
10	emb\|AL732346.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	62	1e-06
11	ref\|XM_415920.1\| PREDICTED: Gallus gallus similar to KIAA0664 pr...	48	0.020
12	emb\|BX248113.22\| Zebrafish DNA sequence from clone CH211-132F21,...	42	1.3
13	ref\|NM_123672.2\| Arabidopsis thaliana cysteine-type endopeptidas...	40	4.9
14	gb\|CP000110.1\| Synechococcus sp. CC9605, complete genome	40	4.9
15	ref\|XM_548191.2\| PREDICTED: Canis familiaris similar to Tumor ne...	40	4.9
16	emb\|AL731573.8\| Human DNA sequence from clone RP11-215C13 on chr...	40	4.9
17	emb\|CR378665.1\| Photobacterium profundum SS9; segment 3/12	40	4.9
18	emb\|AL935165.5\| Zebrafish DNA sequence from clone CH211-198D18 i...	40	4.9
19	emb\|CR927553.8\| Zebrafish DNA sequence from clone DKEY-206P8 in ...	40	4.9
20	gb\|AY114661.1\| Arabidopsis thaliana cysteine protease component ...	40	4.9
21	dbj\|AK074888.1\| Homo sapiens cDNA FLJ90407 fis, clone NT2RP20062...	40	4.9
22	gb\|AC113410.2\| Homo sapiens chromosome 5 clone RP11-485M7, compl...	40	4.9
23	gb\|AY062608.1\| Arabidopsis thaliana cysteine protease component ...	40	4.9
24	gb\|AC159023.4\| Pan troglodytes BAC clone CH251-506L16 from chrom...	40	4.9
25	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.9
26	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.9
27	gb\|AC090522.1\|AC090522 Caenorhabditis briggsae cosmid CB015K23, ...	40	4.9
28	gb\|AC026342.34\| Homo sapiens 3 BAC RP11-559L12 (Roswell Park Can...	40	4.9
29	gb\|AF454957.1\| Brassica oleracea senescence-associated cysteine ...	40	4.9
30	gb\|AC084526.1\|CBRG21D19 Caenorhabditis briggsae cosmid G21D19, c...	40	4.9
31	gb\|AC084515.1\|CBRG17N15 Caenorhabditis briggsae cosmid G17N15, c...	40	4.9
32	gb\|AC022898.11\| Homo sapiens chromosome 15, clone RP11-554D20, c...	40	4.9
33	dbj\|AP004559.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.9
34	dbj\|AP005707.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.9
35	dbj\|AP005683.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.9
36	emb\|BX005263.10\| Mouse DNA sequence from clone RP23-395K13 on ch...	40	4.9
37	dbj\|AB008267.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	4.9
38	emb\|AJ812010.1\| Aspergillus niger gene for putative peptidase, e...	40	4.9
39	emb\|AL833774.4\| Mouse DNA sequence from clone RP23-383I16 on chr...	40	4.9

>ref|XM_474291.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1401

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 296  gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 355
            |||||||||||||||||||||||||  |||||||||||| |||||||||| || ||||||
Sbjct: 1376 gtgcgcttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 1317

                          
Query: 356  ctgatgttgcagac 369
            | | ||||||||||
Sbjct: 1316 cgggtgttgcagac 1303

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>dbj|AK109371.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E09, full
            insert sequence
          Length = 1766

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 296  gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 355
            |||||||||||||||||||||||||  |||||||||||| |||||||||| || ||||||
Sbjct: 1480 gtgcgcttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 1421

                          
Query: 356  ctgatgttgcagac 369
            | | ||||||||||
Sbjct: 1420 cgggtgttgcagac 1407

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>dbj|AK099358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044I21, full
            insert sequence
          Length = 1742

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 296  gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 355
            |||||||||||||||||||||||||  |||||||||||| |||||||||| || ||||||
Sbjct: 1456 gtgcgcttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 1397

                          
Query: 356  ctgatgttgcagac 369
            | | ||||||||||
Sbjct: 1396 cgggtgttgcagac 1383

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>dbj|D90407.1|RICOZB Oryza sativa (japonica cultivar-group) mRNA for oryzain beta,
            complete cds
          Length = 1675

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 296  gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 355
            |||||||||||||||||||||||||  |||||||||||| |||||||||| || ||||||
Sbjct: 1392 gtgcgcttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 1333

                          
Query: 356  ctgatgttgcagac 369
            | | ||||||||||
Sbjct: 1332 cgggtgttgcagac 1319

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>gb|AF366556.1| Oryza sativa saline responsive OSSRIII protein mRNA, partial cds
          Length = 368

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                       
Query: 296 gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 355
           ||||| |||||||||||||||||||  |||||||||||| |||||||||| || ||||||
Sbjct: 349 gtgcgtttcaaagccttcacgctcaatgggctgttcttgctcgctgagcaggttccagcc 290

                         
Query: 356 ctgatgttgcagac 369
           | | ||||||||||
Sbjct: 289 cgggtgttgcagac 276

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>dbj|AK073373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027D09, full
            insert sequence
          Length = 1753

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                        
Query: 296  gtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtcccagcc 355
            |||||||||||||||||||||| ||  |||||||||||| |||||||||| || ||||||
Sbjct: 1481 gtgcgcttcaaagccttcacgcacaatgggctgttcttgctcgctgagcaggttccagcc 1422

                          
Query: 356  ctgatgttgcagac 369
            | | ||||||||||
Sbjct: 1421 cgggtgttgcagac 1408

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>gb|AY106278.1| Zea mays PCO137999 mRNA sequence
          Length = 1382

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                        
Query: 293  agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 352
            |||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 1133 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 1074

                             
Query: 353  gccctgatgttgcagac 369
            || |||| |||||||||
Sbjct: 1073 gctctgacgttgcagac 1057

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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
              complete sequence
          Length = 190432

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                     
Query: 296    gtgcgcttcaaagccttcacgctcagcgggctgttcttg 334
              |||||||||||||||||||||||||  ||||||||||||
Sbjct: 118832 gtgcgcttcaaagccttcacgctcaatgggctgttcttg 118870

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                       
Query: 296      gtgcgcttcaaagccttcacgctcagcgggctgttcttg 334
                |||||||||||||||||||||||||  ||||||||||||
Sbjct: 34207450 gtgcgcttcaaagccttcacgctcaatgggctgttcttg 34207488

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>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete
             sequence
          Length = 101125

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                    
Query: 296   gtgcgcttcaaagccttcacgctcagcgggctgttcttg 334
             |||||||||||||||||||||||||  ||||||||||||
Sbjct: 58152 gtgcgcttcaaagccttcacgctcaatgggctgttcttg 58190

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>ref|XM_415920.1| PREDICTED: Gallus gallus similar to KIAA0664 protein (LOC417675),
           mRNA
          Length = 5549

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 201 aggagggagaaaagctccacacag 224
           ||||||||||||||||||||||||
Sbjct: 978 aggagggagaaaagctccacacag 955

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>emb|BX248113.22| Zebrafish DNA sequence from clone CH211-132F21, complete sequence
          Length = 146026

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 161   atgtctggtttaaattttgaacaaa 185
             |||||||||||||||||| ||||||
Sbjct: 36125 atgtctggtttaaattttcaacaaa 36101

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>ref|NM_123672.2| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type
            peptidase AT5G43060 mRNA, complete cds
          Length = 1675

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 299  cgcttcaaagccttcacgctcagcgggctgttcttg 334
            ||||| |||||||||||||| | ||| |||||||||
Sbjct: 1386 cgctttaaagccttcacgctaaacggactgttcttg 1351

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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    agcaagtcccagccctgatg 361
              ||||||||||||||||||||
Sbjct: 699142 agcaagtcccagccctgatg 699123

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>ref|XM_548191.2| PREDICTED: Canis familiaris similar to Tumor necrosis factor
           receptor superfamily member 16 precursor (Low-affinity
           nerve growth factor receptor) (NGF receptor)
           (Gp80-LNGFR) (p75 ICD) (Low affinity neurotrophin
           receptor p75NTR) (LOC491071), mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 ggagggagaaaagctccaca 221
           ||||||||||||||||||||
Sbjct: 828 ggagggagaaaagctccaca 847

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>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete
             sequence
          Length = 131465

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   cttctacacaaaagcaatgt 164
             ||||||||||||||||||||
Sbjct: 31291 cttctacacaaaagcaatgt 31310

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>emb|CR378665.1| Photobacterium profundum SS9; segment 3/12
          Length = 347213

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    cttcaaagccttcacgctca 320
              ||||||||||||||||||||
Sbjct: 135303 cttcaaagccttcacgctca 135284

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>emb|AL935165.5| Zebrafish DNA sequence from clone CH211-198D18 in linkage group 4
            Contains the cugbp2 gene for CUG triplet repeat, RNA
            binding protein 2, the 5' end of a novel gene and a CpG
            island, complete sequence
          Length = 182748

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  gggagaaaagctccacacag 224
            ||||||||||||||||||||
Sbjct: 9136 gggagaaaagctccacacag 9155

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>emb|CR927553.8| Zebrafish DNA sequence from clone DKEY-206P8 in linkage group 17,
              complete sequence
          Length = 162064

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    gggagaaaagctccacacag 224
              ||||||||||||||||||||
Sbjct: 100074 gggagaaaagctccacacag 100055

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>gb|AY114661.1| Arabidopsis thaliana cysteine protease component of
            protease-inhibitor complex (At5g43060) mRNA, complete cds
          Length = 1485

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 299  cgcttcaaagccttcacgctcagcgggctgttcttg 334
            ||||| |||||||||||||| | ||| |||||||||
Sbjct: 1343 cgctttaaagccttcacgctaaacggactgttcttg 1308

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>dbj|AK074888.1| Homo sapiens cDNA FLJ90407 fis, clone NT2RP2006269, highly similar to
            Protein O-mannosyl-transferase 1 (EC2.4.1.109)
          Length = 2904

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  ctgagcaagtcccagccctg 358
            ||||||||||||||||||||
Sbjct: 2620 ctgagcaagtcccagccctg 2639

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>gb|AC113410.2| Homo sapiens chromosome 5 clone RP11-485M7, complete sequence
          Length = 123851

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   aattttgaacaaaggtttgt 192
             ||||||||||||||||||||
Sbjct: 81154 aattttgaacaaaggtttgt 81173

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>gb|AY062608.1| Arabidopsis thaliana cysteine protease component of
            protease-inhibitor complex (At5g43060; MMG4.7) mRNA,
            complete cds
          Length = 1628

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 299  cgcttcaaagccttcacgctcagcgggctgttcttg 334
            ||||| |||||||||||||| | ||| |||||||||
Sbjct: 1387 cgctttaaagccttcacgctaaacggactgttcttg 1352

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>gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chromosome unknown,
             complete sequence
          Length = 180977

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   aattttgaacaaaggtttgt 192
             ||||||||||||||||||||
Sbjct: 61397 aattttgaacaaaggtttgt 61416

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 39       aagatagtaccagtacaaat 58
                ||||||||||||||||||||
Sbjct: 14406465 aagatagtaccagtacaaat 14406484

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 87      gtagtagtagggatatataa 106
               ||||||||||||||||||||
Sbjct: 7966420 gtagtagtagggatatataa 7966401

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>gb|AC090522.1|AC090522 Caenorhabditis briggsae cosmid CB015K23, complete sequence
          Length = 46455

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   ttccctcgacgacttcatgccgtg 280
             |||||||||||||||| |||||||
Sbjct: 14901 ttccctcgacgacttcgtgccgtg 14924

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>gb|AC026342.34| Homo sapiens 3 BAC RP11-559L12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109490

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 141   aattcttctacacaaaagcaatgt 164
             |||||||||||| |||||||||||
Sbjct: 86450 aattcttctacaaaaaagcaatgt 86427

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>gb|AF454957.1| Brassica oleracea senescence-associated cysteine protease (CP2) mRNA,
            complete cds
          Length = 1699

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 299  cgcttcaaagccttcacgct 318
            ||||||||||||||||||||
Sbjct: 1358 cgcttcaaagccttcacgct 1339

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>gb|AC084526.1|CBRG21D19 Caenorhabditis briggsae cosmid G21D19, complete sequence
          Length = 42422

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   ttccctcgacgacttcatgccgtg 280
             |||||||||||||||| |||||||
Sbjct: 31196 ttccctcgacgacttcgtgccgtg 31219

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>gb|AC084515.1|CBRG17N15 Caenorhabditis briggsae cosmid G17N15, complete sequence
          Length = 40280

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   ttccctcgacgacttcatgccgtg 280
             |||||||||||||||| |||||||
Sbjct: 38362 ttccctcgacgacttcgtgccgtg 38385

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>gb|AC022898.11| Homo sapiens chromosome 15, clone RP11-554D20, complete sequence
          Length = 200380

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   gtgtgcaggagggagaaaag 214
             ||||||||||||||||||||
Sbjct: 57431 gtgtgcaggagggagaaaag 57412

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>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0461A06
          Length = 136384

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    gtagtagtagggatatataa 106
             ||||||||||||||||||||
Sbjct: 38590 gtagtagtagggatatataa 38571

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>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0465E03
          Length = 151206

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    aagatagtaccagtacaaat 58
             ||||||||||||||||||||
Sbjct: 98268 aagatagtaccagtacaaat 98287

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>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1585_D02
          Length = 103172

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 39   aagatagtaccagtacaaat 58
            ||||||||||||||||||||
Sbjct: 6030 aagatagtaccagtacaaat 6049

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>emb|BX005263.10| Mouse DNA sequence from clone RP23-395K13 on chromosome X, complete
             sequence
          Length = 175998

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tatgtacaatgaatacatgt 88
             ||||||||||||||||||||
Sbjct: 10764 tatgtacaatgaatacatgt 10745

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>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4
          Length = 79046

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 299   cgcttcaaagccttcacgctcagcgggctgttcttg 334
             ||||| |||||||||||||| | ||| |||||||||
Sbjct: 15772 cgctttaaagccttcacgctaaacggactgttcttg 15807

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>emb|AJ812010.1| Aspergillus niger gene for putative peptidase, exon 1
          Length = 2960

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 gtgcaggagggagaaaagct 216
           ||||||||||||||||||||
Sbjct: 951 gtgcaggagggagaaaagct 932

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>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete
              sequence
          Length = 194045

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     atatttttaagatagtacca 50
              ||||||||||||||||||||
Sbjct: 109851 atatttttaagatagtacca 109870


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,199,041
Number of Sequences: 3902068
Number of extensions: 3199041
Number of successful extensions: 56784
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56671
Number of HSP's gapped (non-prelim): 113
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

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