>NAC48_ORYSA (Q7F2L3) NAC domain-containing protein 48 (ONAC048)|
          Length = 303

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 14/44 (31%)
 Frame = -1

Query: 345 STAPGVNPAAGL--PAG------------DPLLQDILMYWGKPF 256
           +T   +NPAA +  PAG            DPLLQDILMYWGKPF
Sbjct: 260 ATVGPINPAASILDPAGSGGLGGLGGGGSDPLLQDILMYWGKPF 303

>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
           (Cut-like 2)
          Length = 1424

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 206 SAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGA 340
           S  P P  +P   T SQ G P  ++    SG PA +P   L+P A
Sbjct: 660 SVPPSPPERPSLATASQNGAPALVKQEEGSGGPAQAPLPVLSPAA 704

>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)|
          Length = 1201

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
 Frame = +2

Query: 56   PSSNTPGLPRLIAAVRDSLYTIDTFHPTATSICCR*IPAARPSHPG*FPLSAAPKPHVQP 235
            P    P  P   A    S    +  HPTA+++     P   PSHP    LS        P
Sbjct: 977  PPRENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMG-----LP 1031

Query: 236  PSRTDSQKGLPQYMRMSWRSGSPA--GSPAAGLTPGAV 343
            PSRT S          S  S SP+  GS A+G +  ++
Sbjct: 1032 PSRTPSHPTATVLSTGSPPSESPSRTGSAASGSSDSSI 1069

>S39A6_MOUSE (Q8C145) Zinc transporter SLC39A6 precursor (Solute carrier family|
           39 member 6) (Endoplamic reticulum membrane-linked
           protein) (Ermelin)
          Length = 765

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 57  PPRTHRGSRVSSPPSVTPCTLLIPFIQRLQVSAVDRFRRLARVTPVDFLSQPRPNHTYSR 236
           P R  +    S+PPS+T            + S V R  RLAR    + +S+PR +  YSR
Sbjct: 217 PGRRTKDVNPSTPPSIT------------EKSRVGRLSRLARKKSNESVSEPRKSFMYSR 264

Query: 237 RVGRILKKACPST 275
                +++   +T
Sbjct: 265 NTNDNIQECFNTT 277

>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC|
           2.7.11.25) (NF-kappa beta-inducing kinase)
           (Serine/threonine-protein kinase NIK)
          Length = 942

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +2

Query: 20  HIHHDQVQYSLRPSSNTPGLPRLIAAVRDSLYTIDTFHPTATSICCR*IPAARPSHPG*F 199
           H+   +    LRP    P L +LI+ ++   +     HP AT       P   P+HP  F
Sbjct: 207 HLCFKKQDEGLRPVLPRPELHKLISPLQCLNHVWKLHHPQATG------PRPHPTHP--F 258

Query: 200 PLSAAPKP 223
           P S  P P
Sbjct: 259 PYSGMPHP 266

>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin|
           inhibitor) (CAIN)
          Length = 2182

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +3

Query: 15  KSIYTMTKYSTLCVPPRTHRGSRVSSPPSVTPCTLLIPFIQRLQVSAV 158
           +S+  M  + T C PPR   G R+       P  LL P I    VS V
Sbjct: 275 ESLLAMYNHLTTCEPPRPSLGKRIDLSDYQDPSQLLAPSIVVTPVSVV 322

>PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain-containing|
           protein 16) (Transcription factor MEL1)
          Length = 1276

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +2

Query: 167 PAARPSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGL 328
           PA  P  PG FP S  P+P + PP+        P       +  SP G+PA  L
Sbjct: 508 PALTPGFPGIFPPSLYPRPPLLPPTPLLKS---PLNHTQDAKLPSPLGNPALPL 558

>CBPA_DICDI (P35085) Calcium-binding protein|
          Length = 467

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +2

Query: 167 PAARPSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPG 337
           P  +P  PG +P     +P   PP     Q+G+   +  +   G P   P  G  PG
Sbjct: 167 PPQQPGQPGAYPPQQPGQPGAYPP-----QQGVQNTLAKTGAPGQPGVPPPQGAYPG 218

>RNFC_HAEDU (Q7VNT4) Electron transport complex protein rnfC|
          Length = 702

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 178 PESPRLISSLSRAQTTRTAAESDGFSKRLAPVHEDVLEERVAGRQPRRRVDAR 336
           P    + ++L+RA+  +TA ++DG +  +AP +E     + A      R  AR
Sbjct: 566 PRKAAVAAALARAKAKKTAQQADGLAAEVAPENEIADPRKAAVAAALARAKAR 618

>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response|
           factor 2) (ERF-2)
          Length = 492

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 170 AARPSHPG*F--PLSAAPKPHVQ-PPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPG 337
           AA PS P  F  P   +  P    PPS  DS      Y+  S  SGS +GS +  L PG
Sbjct: 420 AAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG 478

>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +2

Query: 167 PAARPSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAG 325
           P   P  PG  P  A P P   PP+    Q   P   +   +   PAG P  G
Sbjct: 399 PPPGPPPPGPAPPGARPPPPPPPPADEPQQGPAPSGDKPKKKPPPPAGPPPPG 451

>ZCH14_MOUSE (Q8VIG0) Zinc finger CCHC domain-containing protein 14 (BDG-29)|
          Length = 956

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
 Frame = +2

Query: 56  PSSNTPGLPRLIAAVRDSLYTIDT-----------FHPTATSICCR*IPAARPSHPG*FP 202
           P++    +P  I   R +LYT +T             P   S C     A+  SHP    
Sbjct: 665 PNNGQISVPPAIMNPRTALYTANTKVAFSAVSSVPVGPLQGSFCANSNTASPSSHPSTSF 724

Query: 203 LSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGA 340
            S A  P    PS + +   +P+    S+ SG  AGS + G  P +
Sbjct: 725 ASMASLPSCPAPSSSPALSSVPE---SSFYSGG-AGSSSPGNIPAS 766

>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +2

Query: 167 PAARPSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWR--SGSPAGSPAAGLTPGA 340
           P  +P  P     S +PKP  +P  R     GLP   R   R  +G   G+P  G  P A
Sbjct: 164 PKPKPGAP-----SKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGRRTGAPRPGNNPFA 218



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
 Frame = +2

Query: 53  RPSSNTPGLPRLIAAVRDSLYTIDTFHPTATSICCR*IPAARP-SHPG*FPLSAAPKPHV 229
           RP S++   P   +A R S         ++ +   +  PAA+P S P   P    PKPH 
Sbjct: 102 RPGSSSGPKPGRSSAARTSATPRPGLIKSSGASSQQEPPAAKPESKPTPKPGQNVPKPHA 161

Query: 230 QPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPG 337
             P                 + G+P+ SP  G  PG
Sbjct: 162 PAPKP---------------KPGAPSKSPKPGARPG 182

>PERL_HUMAN (P22079) Lactoperoxidase precursor (EC 1.11.1.7) (LPO) (Salivary|
           peroxidase) (SPO)
          Length = 712

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 199 SSLSRAQTTRTAAESDGFSKRLAPVHEDVLEER 297
           +S +RAQTTRT+A SD  S+    V++  L+ R
Sbjct: 21  ASTTRAQTTRTSAISDTVSQAKVQVNKAFLDSR 53

>SYTL5_HUMAN (Q8TDW5) Synaptotagmin-like protein 5|
          Length = 730

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
 Frame = -2

Query: 344 PPPRA--STRRRGCRPATRSSKTSSCTGASL-------FENPSDSAAVRVVWARLREEIN 192
           P PR   S+R  G  P T+SS   S    +        FEN  D AA+      L +   
Sbjct: 243 PGPRTPKSSRSNGVTPGTQSSPAPSTRTVTSVISREYGFENSMDLAAIEGTSQELTKSHR 302

Query: 191 RGDSGEPPESIDSRYL 144
           R  SG P  ++    L
Sbjct: 303 RNTSGTPSIAVSGTSL 318

>XERD_PSEAE (Q9HXQ6) Tyrosine recombinase xerD|
          Length = 298

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -1

Query: 315 GLPAGDPLLQDILMYWGKPF*ESVRLGGCTCGLGAAERGNQPG*LGRAAGIYRQQILVAV 136
           GL A DP LQ  L   GKP  +S+        L A E  +  G   R       ++L A 
Sbjct: 91  GLIAEDPTLQVDLPQLGKPLPKSLSEADVEALLAAPEVDDPLGLRDRT----MLEVLYAC 146

Query: 135 G*KVS-IVYKESRTAAMRRGSPGVFEEGRKE 46
           G +VS +V        +R+G   VF +G KE
Sbjct: 147 GLRVSELVGLTLEQVNLRQGVVKVFGKGSKE 177

>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
 Frame = +2

Query: 125  TFHPTATSICCR*IPAARPSHPG*FPLSAAP--------KPHVQPPSRTDSQKGLPQYMR 280
            +F P+A S      P+  P+HPG  P S  P         P V P     S    P Y  
Sbjct: 1533 SFSPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTS----PNYTA 1588

Query: 281  MSWRSGSPAGSPAA 322
             S    SP  SP++
Sbjct: 1589 SSPGGASPNYSPSS 1602

>CEBPB_BOVIN (O02755) CCAAT/enhancer-binding protein beta (C/EBP beta)|
          Length = 348

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 HPG*FPLSAAPKPHVQPPSRTDSQKGL-PQYMRMSWRSGSPAGSPAAGLTPG 337
           HPG F     P P   PP+   ++ G  P   +    +G+P G  AAG+  G
Sbjct: 153 HPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGG-AAGMAAG 203

>DPO4_VIBPA (Q87MB4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 354

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 205 ERKSTGVTRASRRNLSTADTC 143
           ERKS GV R   +N+ST D C
Sbjct: 243 ERKSVGVERTFSQNISTYDEC 263

>P30_MYCPN (P75330) P30 adhesin (Cytadhesin P30) (30 kDa adhesin-related|
           protein)
          Length = 274

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 179 PSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTP 334
           P HPG      AP+P   P      + G+P +  M+ R G P   P  G+ P
Sbjct: 210 PPHPG-----MAPRPGFPPQPGMAPRPGMPPHPGMAPRPGFP---PQPGMAP 253



 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 179 PSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTP 334
           P HPG      AP+P   P      + G+P +  M+ R G P   P  G+ P
Sbjct: 186 PPHPG-----MAPRPGFPPQPGMAPRPGMPPHPGMAPRPGFP---PQPGMAP 229

>SLAP1_THET8 (Q5SH37) S-layer protein precursor (P100 protein) (Surface layer|
           protein)
          Length = 928

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 200 PLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPG 337
           PLS +   H   P   D Q G+ +    ++  G  AG+P    T G
Sbjct: 561 PLSLSANYHAVDPQYADGQAGMSENEDTTYYGGEKAGAPYGADTRG 606

>SL9A5_RAT (Q9Z0X2) Sodium/hydrogen exchanger 5 (Na(+)/H(+) exchanger 5)|
           (NHE-5) (Solute carrier family 9 member 5)
          Length = 898

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 203 LSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSG 298
           L   P P + PPS T ++K LP      W+SG
Sbjct: 744 LEVCPSPRIIPPSPTCAEKELP------WKSG 769

>FREM2_HUMAN (Q5SZK8) FRAS1-related extracellular matrix protein 2 precursor (ECM3|
            homolog)
          Length = 3169

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 181  RASRRNLSTADTCSRWMKGINSVQGVT 101
            +A   NLS +D    W  G N++QGVT
Sbjct: 1028 KADSFNLSLSDMSQEWRIGGNTIQGVT 1054

>SL9A5_HUMAN (Q14940) Sodium/hydrogen exchanger 5 (Na(+)/H(+) exchanger 5)|
           (NHE-5) (Solute carrier family 9 member 5)
          Length = 896

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 203 LSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSG 298
           L   P P + PPS T ++K LP      W+SG
Sbjct: 742 LEVCPSPRIIPPSPTCAEKELP------WKSG 767

>PCD15_HUMAN (Q96QU1) Protocadherin-15 precursor|
          Length = 1955

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 164  IPAARPSHPG*FPLSAAPKPHVQPP 238
            +PAA+P+ P   P++A P P   PP
Sbjct: 1419 LPAAKPAVPAPAPVAAPPPPPPPPP 1443

>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1|
            precursor (Down syndrome cell adhesion molecule 2)
          Length = 2053

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +2

Query: 26   HHDQVQY-SLRPSSNTPGLPRLIAAVRDSLYTIDT---FHPTATSICCR*IPAARPSHPG 193
            +H Q ++ +L P+S + GLP   A    S  T+       P   +      P   P+ P 
Sbjct: 1937 YHTQARHLTLDPASKSLGLPHPGAPAAASTATLPQRTLAMPAPPAGTAPPAPGPTPAEPP 1996

Query: 194  *FPLSAAPKPHVQPP 238
              P +A P P  +PP
Sbjct: 1997 TAPSAAPPAPSTEPP 2011

>AK_CHLPN (Q9Z6L0) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)|
          Length = 440

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 124 YLSSNGYKYLLSIDSGGSPESPRLISSLSRAQTTRTAAESDG 249
           ++ SNG    + +  GGS  S  LI+ L+RA   R   + +G
Sbjct: 172 FIGSNGLGETVLLGRGGSDYSATLIAELARATEVRIYTDVNG 213

>PRP5_USTMA (Q4PFD9) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC|
           3.6.1.-)
          Length = 1156

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -2

Query: 332 ASTRRRGCRPATRSSKTSSCTGASLFENPSDSAAVRVVWARLREEINRGDSGEPPESIDS 153
           A TRRR   P++  S + S    +    P+ S   R        E +R D   P E+  S
Sbjct: 39  APTRRRSRSPSSYHSSSRSHRDHTTDPYPNGSGHDRRHDRDRNRERDRRDHDSPIEAAPS 98

Query: 152 RYL*PLDERY--Q*CTRSHGRRR*DAGAP 72
               P   R+  +   R  GRRR D GAP
Sbjct: 99  ----PDGRRFHVEGAPRQGGRRRWDEGAP 123

>CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 985

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 23/60 (38%), Positives = 26/60 (43%)
 Frame = +1

Query: 163 DSGGSPESPRLISSLSRAQTTRTAAESDGFSKRLAPVHEDVLEERVAGRQPRRRVDARGG 342
           D     E  RL+ +LSR QTT        FS  LA + ED    R      RRRV A  G
Sbjct: 100 DRQAEQELDRLLKTLSRDQTTSVVRAFSYFS-HLANIAEDQHHNR------RRRVHALAG 152

>YN8N_YEAST (P53735) Hypothetical 67.5 kDa protein in DBP6-COQ2 intergenic|
           region
          Length = 605

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
 Frame = -2

Query: 344 PPPRASTRRRGCRPATRSSKTSSCTGASLF-----------ENPSDSAAVR 225
           PPPR  +  RG  P   SSK SS T  S F           + P  SAA R
Sbjct: 125 PPPRTRSPVRGISPDAGSSKRSSMTLDSPFNFTTSTLQPHQQTPPSSAASR 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,444,084
Number of Sequences: 219361
Number of extensions: 1192624
Number of successful extensions: 4530
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4525
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)