ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart58h02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR318592.7| Zebrafish DNA sequence from clone CH211-51F17 in linkage group 19, complete sequence Length = 124310 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Plus Query: 190 aataacattatatgacaaaaatttacagta 219 |||||||||| |||||| |||||||||||| Sbjct: 77582 aataacattaaatgacagaaatttacagta 77611
>emb|BX511212.10| Zebrafish DNA sequence from clone CH211-127A14 in linkage group 19, complete sequence Length = 178832 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Plus Query: 15 aatattatttccgaaatatcaaaaa 39 |||||||||||| |||||||||||| Sbjct: 40689 aatattatttccaaaatatcaaaaa 40713
>emb|CT009577.5| Mouse DNA sequence from clone RP23-24C24 on chromosome 16, complete sequence Length = 258862 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 tatatagtacattttctgctcatc 72 ||||||||| |||||||||||||| Sbjct: 110490 tatatagtatattttctgctcatc 110467
>emb|AL805944.8| Mouse DNA sequence from clone RP24-387A5 on chromosome 4 Contains a novel pseudogene, complete sequence Length = 195873 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 attatatgacaaaaatttacagta 219 ||||||||||||||||||| |||| Sbjct: 144852 attatatgacaaaaatttatagta 144875
>gb|AC154736.2| Mus musculus BAC clone RP24-389J14 from chromosome 16, complete sequence Length = 141092 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 tatatagtacattttctgctcatc 72 ||||||||| |||||||||||||| Sbjct: 33407 tatatagtatattttctgctcatc 33384
>gb|AC093381.5| Homo sapiens BAC clone RP11-436J10 from 2, complete sequence Length = 121777 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 taacattatatgacaaaaatttac 215 ||||||||||||||||| |||||| Sbjct: 55889 taacattatatgacaaacatttac 55866
>gb|AC010977.4|AC010977 Homo sapiens BAC clone RP11-362J16 from Y, complete sequence Length = 136285 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ataacattatatgacaaaaa 210 |||||||||||||||||||| Sbjct: 64749 ataacattatatgacaaaaa 64768
>dbj|BS000194.1| Pan troglodytes chromosome 22 clone:PTB-063M23, map 22, partial sequences, complete sequence Length = 147891 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tggcaggaaataatattatt 23 |||||||||||||||||||| Sbjct: 7140 tggcaggaaataatattatt 7121
>emb|AL355094.3|CNS05TCD Human chromosome 14 DNA sequence BAC R-676P5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170273 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 tattatgttctttcgatctgacaa 162 ||||||||| |||||||||||||| Sbjct: 114891 tattatgttttttcgatctgacaa 114868
>dbj|AP001721.1| Homo sapiens genomic DNA, chromosome 21q, section 65/105 Length = 340000 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tggcaggaaataatattatt 23 |||||||||||||||||||| Sbjct: 234610 tggcaggaaataatattatt 234591
>emb|BX294103.11| Zebrafish DNA sequence from clone CH211-257A8 in linkage group 9, complete sequence Length = 193969 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cattatatgacaaaaattta 214 |||||||||||||||||||| Sbjct: 82333 cattatatgacaaaaattta 82352
>dbj|AP000334.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:f53H7/f50E8, complete sequence Length = 26061 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tggcaggaaataatattatt 23 |||||||||||||||||||| Sbjct: 19139 tggcaggaaataatattatt 19120
>dbj|AP000173.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B2344F14-f50E8, segment 9/9, complete sequence Length = 90291 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tggcaggaaataatattatt 23 |||||||||||||||||||| Sbjct: 83369 tggcaggaaataatattatt 83350 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,150,207 Number of Sequences: 3902068 Number of extensions: 4150207 Number of successful extensions: 64169 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64146 Number of HSP's gapped (non-prelim): 23 length of query: 272 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 250 effective length of database: 17,147,199,772 effective search space: 4286799943000 effective search space used: 4286799943000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
