>PROL_ARATH (P43299) PROLIFERA protein|
          Length = 716

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 69  DSNRTAVHRSMSNHTQYYTKYAQTSAAWTKLALLAAV--GMGRRPRRPEPLEDGPLPQVL 242
           +S+RTA+H  M   T    K   T++   + A+LAA     GR   R  P E+  LP  L
Sbjct: 447 ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPAL 506

>FLIG_VIBCH (Q9X4Q9) Flagellar motor switch protein fliG|
          Length = 348

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 12  LLPTEMQ-IQAGISRARINGDSNRTAVHRSMSNHTQYYTKYAQTSAAWTKLALLAAVG 182
           L P ++Q + + ++RA+    +  +AVHR+     Q YT     S  + + AL+AA+G
Sbjct: 46  LEPKQVQRVGSAMARAKDLSQTKVSAVHRAFLEDIQKYTNIGMGSEDFLRNALVAALG 103

>PML_HUMAN (P29590) Probable transcription factor PML (Tripartite motif|
           protein 19) (RING finger protein 71)
          Length = 882

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
 Frame = -3

Query: 237 PAAEGRLPAAQVAEVAVPCQRRQAELAWSRLRLFVHTLCS----------TVCDLTWICG 88
           P+   R PA++     + CQ+ QAE    +L   +HTLCS           +C   W  G
Sbjct: 39  PSPTERAPASEEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLG 98

>OTSA_ECOLI (P31677) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC|
           2.4.1.15) (Trehalose-6-phosphate synthase)
           (UDP-glucose-glucosephosphate glucosyltransferase)
          Length = 473

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 69  DSNRTAVHRSMSNHTQYYTKYAQTSAAWTKLALLAAVGMGRRPRRPEPLEDGPLPQVL 242
           +++R A    +SN T+  T+ A++  AW K        +G  P+       GPLP  L
Sbjct: 187 ENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKL 244

>OTSA_ECO57 (Q8XCE7) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC|
           2.4.1.15) (Trehalose-6-phosphate synthase)
           (UDP-glucose-glucosephosphate glucosyltransferase)
          Length = 473

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 69  DSNRTAVHRSMSNHTQYYTKYAQTSAAWTKLALLAAVGMGRRPRRPEPLEDGPLPQVL 242
           +++R A    +SN T+  T+ A++  AW K        +G  P+       GPLP  L
Sbjct: 187 ENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKL 244

>TRPB_RALSO (Q8XXY0) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 403

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +2

Query: 38  GRHQPRAHQRRLKPNC-GPQIHVK----SHTVLHKV 130
           GR  P  H RRL  +C G QI++K    +HT  HKV
Sbjct: 62  GRPSPIYHARRLTEHCGGAQIYLKREDLNHTGAHKV 97

>CDC47_YEAST (P38132) DNA replication licensing factor CDC47 (Cell division|
           control protein 47)
          Length = 845

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 69  DSNRTAVHRSMSNHTQYYTKYAQTSAAWTKLALLAAVG--MGRRPRRPEPLEDGPLPQVL 242
           +S+RTA+H  M   T   +K    +    + ++LAA     GR   R  PL++  LP  L
Sbjct: 531 ESDRTAIHEVMEQQTISISKAVINTNPGARTSILAAANPLYGRINPRLSPLDNINLPAAL 590

>V_PHODV (P35941) Nonstructural protein V|
          Length = 299

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -3

Query: 207 QVAEVAVPCQRRQAELAWSRLRLFVHTLCSTVC-DLTWICGPQFGLSRR*CARG*CLPV 34
           Q  E      RR+  L W+  R ++   C+ +C  + W      G+ R  C  G C PV
Sbjct: 223 QACEPIKKGHRREVSLTWNDDRCWIDKWCNPICTQVNW------GVIRAKCICGECPPV 275

>MCM7_SCHPO (O75001) DNA replication licensing factor mcm7 (Minichromosome|
           maintenance protein 7)
          Length = 760

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 69  DSNRTAVHRSMSNHTQYYTKYAQTSAAWTKLALLAAVG--MGRRPRRPEPLEDGPLPQVL 242
           +S+RTA+H  M   T   +K   T+    + ++LAA     GR   +  P+ +  LP  L
Sbjct: 474 ESDRTAIHEVMEQQTISISKAGITTTLNARTSILAAANPLYGRYNPKVAPIHNINLPAAL 533

>SWAP_CAEEL (Q10580) Protein SWAP (Suppressor of white apricot protein homolog)|
          Length = 749

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 41  RHQPRAHQRRLKPNCGPQIHVKSHTVLHKVCTNKRSLDQASSACR 175
           RH+ R+  RR   +C P+   + H    K   + RS  ++SS  R
Sbjct: 692 RHRKRSRSRRRSRSCSPRDRSREHKKSRKSGRHHRSRSRSSSRDR 736


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,072,330
Number of Sequences: 219361
Number of extensions: 545476
Number of successful extensions: 1624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)