ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 48 0.020
2gb|AC122442.4| Mus musculus BAC clone RP24-230D14 from chromosom... 44 0.30
3gb|AC161865.4| Mus musculus chromosome 19, clone RP23-218F7, com... 44 0.30
4gb|AC113325.7| Mus musculus chromosome 1, clone RP23-453H23, com... 40 4.8
5gb|AC093755.2| Homo sapiens BAC clone RP11-55C6 from 4, complete... 40 4.8
6gb|M32030.1|RABHFMO Rabbit hepatic flavin-containing monooxygena... 40 4.8

>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 1     agtcccttgaaaagaaacaccacc 24
             ||||||||||||||||||||||||
Sbjct: 15150 agtcccttgaaaagaaacaccacc 15127



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>gb|AC122442.4| Mus musculus BAC clone RP24-230D14 from chromosome 19, complete
             sequence
          Length = 180516

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 209   cccataatctccatggctctct 230
             ||||||||||||||||||||||
Sbjct: 54311 cccataatctccatggctctct 54290



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>gb|AC161865.4| Mus musculus chromosome 19, clone RP23-218F7, complete sequence
          Length = 206019

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 209   cccataatctccatggctctct 230
             ||||||||||||||||||||||
Sbjct: 75079 cccataatctccatggctctct 75100



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>gb|AC113325.7| Mus musculus chromosome 1, clone RP23-453H23, complete sequence
          Length = 191225

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    atgagaaagccaacaatgac 52
             ||||||||||||||||||||
Sbjct: 33201 atgagaaagccaacaatgac 33182



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>gb|AC093755.2| Homo sapiens BAC clone RP11-55C6 from 4, complete sequence
          Length = 146673

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 269   tctttcacctcctttattgtttct 292
             |||||||||||||||||| |||||
Sbjct: 55035 tctttcacctcctttattttttct 55012



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>gb|M32030.1|RABHFMO Rabbit hepatic flavin-containing monooxygenase (hepatic FMO) mRNA,
           complete cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 ttttctttcacctcctttat 285
           ||||||||||||||||||||
Sbjct: 974 ttttctttcacctcctttat 955


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,737,830
Number of Sequences: 3902068
Number of extensions: 2737830
Number of successful extensions: 56333
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56323
Number of HSP's gapped (non-prelim): 10
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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