ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXP17_ARATH (Q9ZSI1) Putative alpha-expansin 17 precursor (AtEXP... 32 0.42
2EXP11_ARATH (Q9LNU3) Alpha-expansin 11 precursor (AtEXPA11) (At-... 32 0.55
3Q300_MOUSE (Q02722) Protein Q300 29 2.7
4CYT4_NEUCR (P47950) Mitochondrial protein cyt-4 28 7.9
5VP2_AHSV6 (O71024) Outer capsid protein VP2 28 7.9

>EXP17_ARATH (Q9ZSI1) Putative alpha-expansin 17 precursor (AtEXPA17) (At-EXP17)|
           (AtEx17) (Ath-ExpAlpha-1.13)
          Length = 255

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 282 VVPRTWRFGQTFSSNLQF 229
           VVP  WRFGQ+F SN+ F
Sbjct: 238 VVPSNWRFGQSFKSNVNF 255



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>EXP11_ARATH (Q9LNU3) Alpha-expansin 11 precursor (AtEXPA11) (At-EXP11) (AtEx11)|
           (Ath-ExpAlpha-1.14)
          Length = 252

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 282 VVPRTWRFGQTFSSNLQF 229
           VVP +W FGQ +SSN+QF
Sbjct: 235 VVPSSWSFGQIYSSNVQF 252



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>Q300_MOUSE (Q02722) Protein Q300|
          Length = 77

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 101 IYFSCIGLCACLKVQSTCTLACMC 30
           +++ C+ +C C+ V   CTL CMC
Sbjct: 24  LFYVCVCVCVCVCV-CVCTLTCMC 46



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>CYT4_NEUCR (P47950) Mitochondrial protein cyt-4|
          Length = 1117

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 273  RTWRFGQTFSSNLQFK*SRSVDDVRRTCVKMNLD 172
            R WRFG+     +  K + +V +V+ TCV+  +D
Sbjct: 995  RAWRFGEGKEGQVPEKFTYTVVNVQNTCVRGRID 1028



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>VP2_AHSV6 (O71024) Outer capsid protein VP2|
          Length = 1051

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 120 WMCWVVDLLFLYRIVCLLKSSKY 52
           W+ WVVDL+ L ++  L+K  K+
Sbjct: 428 WVDWVVDLIMLAQVKMLIKEYKF 450


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,165,475
Number of Sequences: 219361
Number of extensions: 745595
Number of successful extensions: 1718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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