ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58g09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragment; clone MWG2088.uni Length = 363 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Plus Query: 238 gttactcgagaaggtctggccgaacctccaggtgcgcggcaccacg 283 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gttactcgagaaggtctggccgaacctccaggtgcgcggcaccacg 46
>ref|XM_474982.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 786 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 tcgagaaggtctggccgaacctccag 268 |||||||||||||||||||| ||||| Sbjct: 766 tcgagaaggtctggccgaacgtccag 741
>gb|AF394543.1| Oryza sativa alpha-expansin OsEXPA1 (EXPA1) gene, complete cds Length = 2637 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 tcgagaaggtctggccgaacctccag 268 |||||||||||||||||||| ||||| Sbjct: 2378 tcgagaaggtctggccgaacgtccag 2353
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 tcgagaaggtctggccgaacctccag 268 |||||||||||||||||||| ||||| Sbjct: 8557888 tcgagaaggtctggccgaacgtccag 8557863
>emb|Y07782.1|OSEXPANSI Oryza sativa expansin (Os-EXP-1) mRNA, complete cds Length = 1081 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 tcgagaaggtctggccgaacctccag 268 |||||||||||||||||||| ||||| Sbjct: 778 tcgagaaggtctggccgaacgtccag 753
>dbj|AK069548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022N21, full insert sequence Length = 1137 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 tcgagaaggtctggccgaacctccag 268 |||||||||||||||||||| ||||| Sbjct: 809 tcgagaaggtctggccgaacgtccag 784
>emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065B15, complete sequence Length = 150007 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 tcgagaaggtctggccgaacctccag 268 |||||||||||||||||||| ||||| Sbjct: 18331 tcgagaaggtctggccgaacgtccag 18306
>gb|AF394549.1| Oryza sativa alpha-expansin OsEXPA13 (EXPA13) gene, complete cds Length = 4996 Score = 42.1 bits (21), Expect = 0.93 Identities = 39/45 (86%) Strand = Plus / Minus Query: 223 tcacttgaactgcaggttactcgagaaggtctggccgaacctcca 267 |||||||||||| | ||| |||| ||| || |||||||||||||| Sbjct: 3625 tcacttgaactgtatgttgctcgcgaacgtttggccgaacctcca 3581
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.93 Identities = 39/45 (86%) Strand = Plus / Minus Query: 223 tcacttgaactgcaggttactcgagaaggtctggccgaacctcca 267 |||||||||||| | ||| |||| ||| || |||||||||||||| Sbjct: 9552278 tcacttgaactgtatgttgctcgcgaacgtttggccgaacctcca 9552234
>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0693E08 Length = 157969 Score = 42.1 bits (21), Expect = 0.93 Identities = 39/45 (86%) Strand = Plus / Minus Query: 223 tcacttgaactgcaggttactcgagaaggtctggccgaacctcca 267 |||||||||||| | ||| |||| ||| || |||||||||||||| Sbjct: 16496 tcacttgaactgtatgttgctcgcgaacgtttggccgaacctcca 16452
>gb|AC145508.3| Dasypus novemcinctus clone VMRC5-464O17, complete sequence Length = 169201 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 158277 tggacgtgcacacatgcaag 158258
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1215015 tggacgtgcacacatgcaag 1214996
>gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromosome 12 centromeric region Length = 326112 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 atgtctaagttcatcttcac 189 |||||||||||||||||||| Sbjct: 107916 atgtctaagttcatcttcac 107897
>gb|AC095247.5| Rattus norvegicus 4 BAC CH230-10C6 (Children's Hospital Oakland Research Institute) complete sequence Length = 238466 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 192145 tggacgtgcacacatgcaag 192126
>gb|BC026373.1| Mus musculus wingless-related MMTV integration site 2, mRNA (cDNA clone MGC:31115 IMAGE:4162686), complete cds Length = 1719 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1081 tggacgtgcacacatgcaag 1100
>gb|AC087112.2| Rattus norvegicus strain Brown Norway clone RP31-162L19, complete sequence Length = 149639 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 24257 tggacgtgcacacatgcaag 24238
>ref|NM_023653.3| Mus musculus wingless-related MMTV integration site 2 (Wnt2), mRNA Length = 2027 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1098 tggacgtgcacacatgcaag 1117
>gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence Length = 142512 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 115413 tggacgtgcacacatgcaag 115394
>gb|AC121216.4| Rattus norvegicus 4 CH230-220A21 (Children's Hospital Oakland Research Institute) complete sequence Length = 224326 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 104654 tggacgtgcacacatgcaag 104635
>emb|AL593856.8| Human DNA sequence from clone RP11-8J9 on chromosome 1 Contains the 5' end of the ATPAF1 gene for ATP synthase mitochondrial F1 complex assembly factor 1, a secreted protein of unknown function (SPUF) pseudogene, three novel genes, gene KIAA0494, a novel pseudogene and the 5' end of the CYP4B1 gene for cytochrome P450 family 4 subfamily B polypeptide 1, complete sequence Length = 157373 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 atacaagaaaagtaaatcaa 104 |||||||||||||||||||| Sbjct: 39116 atacaagaaaagtaaatcaa 39097
>gb|AC173914.3| Nomascus leucogenys leucogenys clone CH271-445J13, complete sequence Length = 188657 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 51365 tggacgtgcacacatgcaag 51346
>emb|AL954817.9| Mouse DNA sequence from clone RP24-84L18 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to human non-kinase Cdc42 effector protein SPEC2, a heterogeneous nuclear ribonucleoprotein A3 (Hnrpa3) pseudogene, three novel genes, the Hint1 gene for histidine triad nucleotide binding protein and two CpG islands, complete sequence Length = 156468 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tgcaagccagtgtgcatgta 54 |||||||||||||||||||| Sbjct: 105350 tgcaagccagtgtgcatgta 105369
>emb|AL832653.1|HSM803963 Homo sapiens genomic DNA; cDNA DKFZp313A1412 (from clone DKFZp313A1412) Length = 3863 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 atacaagaaaagtaaatcaa 104 |||||||||||||||||||| Sbjct: 101 atacaagaaaagtaaatcaa 120
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete sequence Length = 143507 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 228 tgaactgcaggttactcgagaaggtctggccgaacctcca 267 |||||||| || | |||| ||| ||||||||||||||||| Sbjct: 85932 tgaactgctgggtgctcgcgaacgtctggccgaacctcca 85893
>dbj|AK167642.1| Mus musculus 13 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530025P16 product:wingless-related MMTV integration site 2, full insert sequence Length = 1725 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1102 tggacgtgcacacatgcaag 1121
>gb|AC161247.2| Mus musculus BAC clone RP24-447J22 from chromosome 12, complete sequence Length = 159391 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tatggacgtgcacacatgca 38 |||||||||||||||||||| Sbjct: 65879 tatggacgtgcacacatgca 65898
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1220145 tggacgtgcacacatgcaag 1220126
>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete sequence Length = 230839 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 135596 tggacgtgcacacatgcaag 135577
>dbj|AK045120.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130036G12 product:wingless-related MMTV integration site 2, full insert sequence Length = 2027 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1098 tggacgtgcacacatgcaag 1117
>gb|AC146885.3| Callithrix jacchus clone CH259-349L5, complete sequence Length = 213940 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 60107 tggacgtgcacacatgcaag 60088
>dbj|AK012093.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610510E18 product:wingless-related MMTV integration site 2, full insert sequence Length = 1728 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1102 tggacgtgcacacatgcaag 1121
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 228 tgaactgcaggttactcgagaaggtctggccgaacctcca 267 |||||||| || | |||| ||| ||||||||||||||||| Sbjct: 30005235 tgaactgctgggtgctcgcgaacgtctggccgaacctcca 30005196
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1016043 tggacgtgcacacatgcaag 1016024
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold Length = 1825024 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1079366 tggacgtgcacacatgcaag 1079347
>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold Length = 1819346 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1028472 tggacgtgcacacatgcaag 1028453
>gb|AC151391.3| Oryctolagus cuniculus clone LB1-231P8, complete sequence Length = 53522 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 25029 tggacgtgcacacatgcaag 25010
>ref|XM_575397.1| PREDICTED: Rattus norvegicus wingless-related MMTV integration site 2 (Wnt2), mRNA Length = 2017 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 1097 tggacgtgcacacatgcaag 1116
>emb|BX294168.12| Mouse DNA sequence from clone RP23-29M4 on chromosome X, complete sequence Length = 225924 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 cagtgtgcatgtactttgaa 61 |||||||||||||||||||| Sbjct: 145432 cagtgtgcatgtactttgaa 145451
>gb|AF139764.1|AF139764 Colorado tick fever virus segment 8 strain Florio VP8 gene, complete cds Length = 2029 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gtctaagttcatcttcacgc 191 |||||||||||||||||||| Sbjct: 665 gtctaagttcatcttcacgc 646
>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541C02 Length = 150660 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 228 tgaactgcaggttactcgagaaggtctggccgaacctcca 267 |||||||| || | |||| ||| ||||||||||||||||| Sbjct: 81383 tgaactgctgggtgctcgcgaacgtctggccgaacctcca 81344
>gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208007 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 62134 tggacgtgcacacatgcaag 62115
>gb|AC002315.1|AC002315 Mouse BAC-146N21 Chromosome X contains iduronate-2-sulfatase gene; complete sequence Length = 110079 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 cagtgtgcatgtactttgaa 61 |||||||||||||||||||| Sbjct: 81403 cagtgtgcatgtactttgaa 81384
>dbj|AK070133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046O16, full insert sequence Length = 1071 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 228 tgaactgcaggttactcgagaaggtctggccgaacctcca 267 |||||||| || | |||| ||| ||||||||||||||||| Sbjct: 862 tgaactgctgggtgctcgcgaacgtctggccgaacctcca 823
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 acacaatccgatacaagaaa 94 |||||||||||||||||||| Sbjct: 1574389 acacaatccgatacaagaaa 1574408
>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete sequence Length = 201738 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tatggacgtgcacacatgca 38 |||||||||||||||||||| Sbjct: 190325 tatggacgtgcacacatgca 190344
>gb|AC139303.3| Cercopithecus aethiops clone CH252-456L3, complete sequence Length = 179499 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 68414 tggacgtgcacacatgcaag 68395
>gb|AC153316.3| Colobus guereza clone CH272-352J9, complete sequence Length = 129503 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tggacgtgcacacatgcaag 40 |||||||||||||||||||| Sbjct: 78104 tggacgtgcacacatgcaag 78085 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,572,428 Number of Sequences: 3902068 Number of extensions: 2572428 Number of successful extensions: 41549 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41419 Number of HSP's gapped (non-prelim): 130 length of query: 283 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 261 effective length of database: 17,147,199,772 effective search space: 4475419140492 effective search space used: 4475419140492 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
