Clone Name | rbart58g08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds Length = 1285 Score = 438 bits (221), Expect = e-120 Identities = 235/237 (99%), Gaps = 2/237 (0%) Strand = Plus / Minus Query: 1 gtcccttctt-aataataatttacatacatatgcacgctggattaaatggcgtgcgtggt 59 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1273 gtcccttctttaataataatttacatacatatgcacgctggattaaatggcgtgcgtggt 1214 Query: 60 actggtacaatgcaaaaggtagggaaagtagtacagcaggtactatactgactgaaactc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1213 actggtacaatgcaaaaggtagggaaagtagtacagcaggtactatactgactgaaactc 1154 Query: 120 gcagacttgaacaggcgacgctgccggcaggcacacacaccgaggagagacggcagattt 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 gcagacttgaacaggcgacgctgccggcaggcacacacaccgaggagagacggcagattt 1094 Query: 180 gagaactattacagcgtgcgcggccgagacacgatccacg-tacgcgcgcaccagca 235 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1093 gagaactattacagcgtgcgcggccgagacacgatccacgttacgcgcgcaccagca 1037 Score = 133 bits (67), Expect = 4e-28 Identities = 70/71 (98%) Strand = Plus / Minus Query: 253 atgatcggtcgacgatgaacagcgattagattccatccatggccgcccagactgattggt 312 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1019 atgatcggtcgacgatgaacagcgataagattccatccatggccgcccagactgattggt 960 Query: 313 ccactagccgc 323 ||||||||||| Sbjct: 959 ccactagccgc 949
>gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, complete cds Length = 1248 Score = 58.0 bits (29), Expect = 2e-05 Identities = 48/53 (90%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 4 ccttcttaat-aataatttacatacatatgcacgctggattaaatggcgtgcg 55 |||||||||| ||||||||||||||||||||||||| |||||| ||||||| Sbjct: 1229 ccttcttaattaataatttacatacatatgcacgctccgttaaatcgcgtgcg 1177 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 136 gacgctgccggcaggcacacacaccgaggagag 168 ||||||| ||||||||||||||||||||||||| Sbjct: 1111 gacgctgtcggcaggcacacacaccgaggagag 1079 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 253 atgatcggtcgacgatgaacagcgattagattcca 287 ||||||| |||||||||||||||||| |||||||| Sbjct: 1007 atgatcgatcgacgatgaacagcgataagattcca 973 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aactcgcagacttgaacagg 134 |||||||||||||||||||| Sbjct: 1142 aactcgcagacttgaacagg 1123
>gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174309 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 taataataatttacatacatat 31 |||||||||||||||||||||| Sbjct: 29491 taataataatttacatacatat 29512
>gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OABb-289A1, complete sequence Length = 109794 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ataatttacatacatatgcac 35 ||||||||||||||||||||| Sbjct: 95031 ataatttacatacatatgcac 95011
>gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_F05, complete sequence Length = 119573 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 taataataatttacatacatatgca 34 ||||||||| ||||||||||||||| Sbjct: 27479 taataataacttacatacatatgca 27503
>emb|CR702474.2|CNS0G4ZA Tetraodon nigroviridis full-length cDNA Length = 969 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 64 gggaaagtagtacagcaggta 44
>emb|CR702005.2|CNS0G4M9 Tetraodon nigroviridis full-length cDNA Length = 970 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 64 gggaaagtagtacagcaggta 44
>emb|CR701878.2|CNS0G4IQ Tetraodon nigroviridis full-length cDNA Length = 934 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 30 gggaaagtagtacagcaggta 10
>emb|CR700458.2|CNS0G3FA Tetraodon nigroviridis full-length cDNA Length = 965 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 64 gggaaagtagtacagcaggta 44
>emb|CR698963.2|CNS0G29R Tetraodon nigroviridis full-length cDNA Length = 969 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 64 gggaaagtagtacagcaggta 44
>emb|CR697642.2|CNS0G192 Tetraodon nigroviridis full-length cDNA Length = 961 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 56 gggaaagtagtacagcaggta 36
>emb|CR696608.2|CNS0G0GC Tetraodon nigroviridis full-length cDNA Length = 967 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 62 gggaaagtagtacagcaggta 42
>emb|CR694961.2|CNS0FZ6L Tetraodon nigroviridis full-length cDNA Length = 969 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 64 gggaaagtagtacagcaggta 44
>emb|CR693847.2|CNS0FYBN Tetraodon nigroviridis full-length cDNA Length = 964 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 63 gggaaagtagtacagcaggta 43
>emb|CR693583.2|CNS0FY4B Tetraodon nigroviridis full-length cDNA Length = 964 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 63 gggaaagtagtacagcaggta 43
>emb|CR693474.2|CNS0FY1A Tetraodon nigroviridis full-length cDNA Length = 934 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 50 gggaaagtagtacagcaggta 30
>emb|CR690780.2|CNS0FVYG Tetraodon nigroviridis full-length cDNA Length = 967 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 62 gggaaagtagtacagcaggta 42
>emb|CR689984.2|CNS0FVCC Tetraodon nigroviridis full-length cDNA Length = 935 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 30 gggaaagtagtacagcaggta 10
>emb|CR686426.2|CNS0FSLI Tetraodon nigroviridis full-length cDNA Length = 960 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 55 gggaaagtagtacagcaggta 35
>emb|CR685561.2|CNS0FRXH Tetraodon nigroviridis full-length cDNA Length = 961 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 55 gggaaagtagtacagcaggta 35
>emb|CR685520.2|CNS0FRWC Tetraodon nigroviridis full-length cDNA Length = 964 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 64 gggaaagtagtacagcaggta 44
>emb|CR684429.2|CNS0FR21 Tetraodon nigroviridis full-length cDNA Length = 975 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gggaaagtagtacagcaggta 101 ||||||||||||||||||||| Sbjct: 68 gggaaagtagtacagcaggta 48
>emb|BX537273.16| Zebrafish DNA sequence from clone CH211-151F2 in linkage group 10, complete sequence Length = 167226 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 taataataatttacatacata 30 ||||||||||||||||||||| Sbjct: 60087 taataataatttacatacata 60107
>gb|AC116631.6| Homo sapiens BAC clone RP11-429B11 from 4, complete sequence Length = 125133 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ataatttacatacatatgcac 35 ||||||||||||||||||||| Sbjct: 18615 ataatttacatacatatgcac 18635
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 taataataatttacatacatatgca 34 ||||||||| ||||||||||||||| Sbjct: 15861488 taataataacttacatacatatgca 15861464
>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22, complete sequence Length = 164475 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aataataatttacatacatat 31 ||||||||||||||||||||| Sbjct: 30255 aataataatttacatacatat 30275
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 ggcgacgctgccggcaggcac 153 ||||||||||||||||||||| Sbjct: 2595820 ggcgacgctgccggcaggcac 2595840
>emb|BX005014.5| Zebrafish DNA sequence from clone CH211-103E2 in linkage group 10, complete sequence Length = 160621 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 taataataatttacatacata 30 ||||||||||||||||||||| Sbjct: 47614 taataataatttacatacata 47634
>gb|AC167201.6| Mus musculus 10 BAC RP23-402J11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 216676 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cagatttgagaactattaca 192 |||||||||||||||||||| Sbjct: 46344 cagatttgagaactattaca 46325
>gb|AC166171.2| Mus musculus BAC clone RP23-136L14 from chromosome 16, complete sequence Length = 199601 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tgcgtggtactggtacaatg 71 |||||||||||||||||||| Sbjct: 64904 tgcgtggtactggtacaatg 64885
>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence Length = 183648 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 taataataatttacatacat 29 |||||||||||||||||||| Sbjct: 3763 taataataatttacatacat 3744
>gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome 15, complete sequence Length = 233904 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 ttaataataatttacatacatatg 32 ||||||||||| |||||||||||| Sbjct: 205619 ttaataataatatacatacatatg 205596
>gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosome 9, complete sequence Length = 209835 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tgcgtggtactggtacaatg 71 |||||||||||||||||||| Sbjct: 199385 tgcgtggtactggtacaatg 199366
>emb|BX511098.5| Zebrafish DNA sequence from clone CH211-202L3 in linkage group 5, complete sequence Length = 72481 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ttcttaataataatttacat 25 |||||||||||||||||||| Sbjct: 25089 ttcttaataataatttacat 25108
>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166000 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 taataataatttacatacat 29 |||||||||||||||||||| Sbjct: 100924 taataataatttacatacat 100943
>emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 in linkage group 3, complete sequence Length = 190220 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 taataataatttacatacat 29 |||||||||||||||||||| Sbjct: 69241 taataataatttacatacat 69260
>gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, region 90A-90A, BAC clone BACR48C05, complete sequence Length = 164450 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tacatacatatgcacgctgg 40 |||||||||||||||||||| Sbjct: 141958 tacatacatatgcacgctgg 141939
>gb|AC160029.3| Mus musculus 10 BAC RP24-105I7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 184696 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cagatttgagaactattaca 192 |||||||||||||||||||| Sbjct: 18168 cagatttgagaactattaca 18187
>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete sequence Length = 198559 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 ttaataataatttacatacatatg 32 ||||||||||| |||||||||||| Sbjct: 83579 ttaataataatatacatacatatg 83602
>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence Length = 169897 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ttcttaataataatttacat 25 |||||||||||||||||||| Sbjct: 69809 ttcttaataataatttacat 69790
>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4, complete sequence Length = 99176 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 taataataatttacatacat 29 |||||||||||||||||||| Sbjct: 76094 taataataatttacatacat 76075
>gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55 of 118 of the complete sequence Length = 217725 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tacatacatatgcacgctgg 40 |||||||||||||||||||| Sbjct: 123669 tacatacatatgcacgctgg 123650
>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete sequence Length = 332030 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 taataataatttacatacat 29 |||||||||||||||||||| Sbjct: 23638 taataataatttacatacat 23619
>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete sequence Length = 203615 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgcgtggtactggtacaatg 71 |||||||||||||||||||| Sbjct: 196039 tgcgtggtactggtacaatg 196058
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gaacaggcgacgctgccggc 147 |||||||||||||||||||| Sbjct: 1380459 gaacaggcgacgctgccggc 1380478
>emb|BX005187.9| Mouse DNA sequence from clone RP23-187O10 on chromosome X, complete sequence Length = 98612 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tgcgtggtactggtacaatg 71 |||||||||||||||||||| Sbjct: 32191 tgcgtggtactggtacaatg 32172
>gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, complete sequence Length = 174162 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tgcgtggtactggtacaatg 71 |||||||||||||||||||| Sbjct: 50679 tgcgtggtactggtacaatg 50660
>gb|AC127297.4| Mus musculus BAC clone RP23-395B13 from chromosome 3, complete sequence Length = 222889 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 acaatgcaaaaggtagggaa 85 |||||||||||||||||||| Sbjct: 94243 acaatgcaaaaggtagggaa 94262 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,562,535 Number of Sequences: 3902068 Number of extensions: 2562535 Number of successful extensions: 56194 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56070 Number of HSP's gapped (non-prelim): 123 length of query: 323 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 301 effective length of database: 17,147,199,772 effective search space: 5161307131372 effective search space used: 5161307131372 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)