ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FBN3_HUMAN (Q75N90) Fibrillin-3 precursor 30 1.5
2PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7... 30 2.0
3UN13C_HUMAN (Q8NB66) Unc-13 homolog C (Munc13-3) (Fragment) 30 2.0
4UN13C_RAT (Q62770) Unc-13 homolog C (Munc13-3) 29 3.4
5EGFL8_HUMAN (Q99944) EGF-like domain-containing protein 8 precur... 29 3.4
6VE2_PAPVE (P11329) Probable regulatory protein E2 28 4.5
7NUCC_PSINU (Q8WHX3) NAD(P)H-quinone oxidoreductase chain H, chlo... 28 4.5
8TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36) 28 5.9
9CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precur... 28 7.7

>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor|
          Length = 2809

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 145  YSPEPRQRTCM*SHQCSVVV*YCSLLCKSSK 53
            Y+P+    TC+   +CS V   C+ LCK++K
Sbjct: 2394 YTPDATATTCLDMDECSQVPKPCTFLCKNTK 2424



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>PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7.11.1)|
          Length = 1142

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 146  QSKSKSSTSNLEDKLEFHGNTDDGK 220
            Q K+ + TSNL D +EF+GN D  K
Sbjct: 1022 QKKATTETSNLTDIVEFNGNNDHRK 1046



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>UN13C_HUMAN (Q8NB66) Unc-13 homolog C (Munc13-3) (Fragment)|
          Length = 1190

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 129  LGSGEYRARARVAHQTWKTNWNSTVTRTMGREGRPHQKEIH 251
            LG  + +   +    TW   +N T    +G+E RP   E+H
Sbjct: 1070 LGDKKRKQGTKTKSNTWSPKYNETFQFILGKENRPGAYELH 1110



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>UN13C_RAT (Q62770) Unc-13 homolog C (Munc13-3)|
          Length = 2204

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 129  LGSGEYRARARVAHQTWKTNWNSTVTRTMGREGRPHQKEIH 251
            LG  + +   +    TW   +N T    +G E RP   E+H
Sbjct: 2084 LGDKKRKQGTKTKSNTWSPKYNETFQFILGNENRPGAYELH 2124



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>EGFL8_HUMAN (Q99944) EGF-like domain-containing protein 8 precursor (Epidermal|
           growth factor-like protein 8) (Multiple EGF-like domain
           protein 8) (Vascular endothelial-statin 2) (VE-statin-2)
          Length = 293

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = +3

Query: 45  ETTLLDLHNNEQYYTTTEH**DYIQVLCLGSGEYRARARVAHQTWKTNWNSTVTRTMGRE 224
           +T ++ LH NE Y         Y   L L +G      R    T++T +     R M RE
Sbjct: 41  QTLVVPLHYNESYSQPV-----YKPYLTLCAG------RRICSTYRTMY-----RVMWRE 84

Query: 225 GRPHQKEIHSEHAVCSSGW 281
            R   +E+   HAVC  GW
Sbjct: 85  VR---REVQQTHAVCCQGW 100



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>VE2_PAPVE (P11329) Probable regulatory protein E2|
          Length = 415

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 165 AHQTWKTNWNSTVTRTMGREGRPHQKEIHSEHAVCSSGWDGIFLCS 302
           +++TW T W++   R    EG         E AVC++   GI+ C+
Sbjct: 128 SNKTWYTAWSTVYVRGTEEEG--------WETAVCAADGQGIYYCA 165



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>NUCC_PSINU (Q8WHX3) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain H)
           (NADH-plastoquinone oxidoreductase 49 kDa subunit)
          Length = 393

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 156 ARVAHQTWKTNWNSTVTRTMGREGRPHQKEIHSEHAV---CSSGWDGIFL 296
           AR  HQ+    WN    + MG++  P  K +  EH V      G  GIFL
Sbjct: 292 ARRLHQSQNLEWNDFDYQFMGKKSSPTFKLLKQEHYVRIEAPKGELGIFL 341



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>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = -3

Query: 300  YKERCHPNPKSKLRVLSEFLSDGGGP----LFPSSVLPWNSNLSSKFDVXXXXXLCIHLN 133
            + +R  P+P +++RVL  F S GG P    +F + +  W     S+ D          L 
Sbjct: 2176 FVQRLTPHPDARIRVLPAF-SAGGPPTRGLMFGTRLADWRRGKLSETDPLAPWRSVPELG 2234

Query: 132  PDRGLVCNLIS-AQLLCSTA 76
             +RG     +S AQ L + +
Sbjct: 2235 TERGAALGKLSPAQALAAVS 2254



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>CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)|
           (Cysteine-rich repeat-containing protein S52)
          Length = 1036

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 114 CNLISAQLLCSTARCCANP 58
           CN+I+ +  C+T R C+NP
Sbjct: 133 CNIINGKCECNTIRTCSNP 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,267,481
Number of Sequences: 219361
Number of extensions: 844608
Number of successful extensions: 2284
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2282
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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