>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein
          Length = 1225

 Score =  498 bits (251), Expect = e-138
 Identities = 257/259 (99%)
 Strand = Plus / Minus

                                                                        
Query: 47   aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 1140

                                                                        
Query: 107  agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagc 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1139 agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagt 1080

                                                                        
Query: 167  acatcaaacttggaagacaaattggaattccacggtaacacggacgatgggaagagaggg 226
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1079 acatcaaacttggaagacaaattggaattccacggtaacagggacgatgggaagagaggg 1020

                                                                        
Query: 227  ccgcccccatcagaaagaaattcactcagaacacgcagtttgctcttcgggttgggatgg 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 ccgcccccatcagaaagaaattcactcagaacacgcagtttgctcttcgggttgggatgg 960

                               
Query: 287  catctttctttgtagcagc 305
            |||||||||||||||||||
Sbjct: 959  catctttctttgtagcagc 941

>emb|AL772318.6| Mouse DNA sequence from clone RP23-77I17 on chromosome 4, complete
              sequence
          Length = 249534

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 124    tctgtctgggttcaggtgaatacagag 150
              ||||||||||| |||||||||||||||
Sbjct: 225070 tctgtctgggtacaggtgaatacagag 225044

>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 210101

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   acatcaaacttggaagacaaa 187
             |||||||||||||||||||||
Sbjct: 24157 acatcaaacttggaagacaaa 24177

>gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 171960

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 167    acatcaaacttggaagacaaa 187
              |||||||||||||||||||||
Sbjct: 121183 acatcaaacttggaagacaaa 121203

>ref|XM_521983.1| PREDICTED: Pan troglodytes similar to expressed sequence AI841794
           (LOC466584), mRNA
          Length = 1269

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  tgctggatttgcacaacaac 74
           ||||||||||||||||||||
Sbjct: 407 tgctggatttgcacaacaac 426

>ref|NM_001005210.1| Homo sapiens leucine rich repeat containing 55 (LRRC55), mRNA
          Length = 3797

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  tgctggatttgcacaacaac 74
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573

>emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in linkage group 10,
             complete sequence
          Length = 127879

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   cagaaagaaattcactcaga 256
             ||||||||||||||||||||
Sbjct: 53978 cagaaagaaattcactcaga 53997

>gb|AC120055.5| Homo sapiens chromosome 18, clone CTD-2362J14, complete sequence
          Length = 96630

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    tgaaatctaattgaagaggg 36
             ||||||||||||||||||||
Sbjct: 44361 tgaaatctaattgaagaggg 44380

>gb|AC007528.5| Homo sapiens 12 BAC RP11-473N11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188451

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    cagagcaagagcaagagtag 165
              ||||||||||||||||||||
Sbjct: 155822 cagagcaagagcaagagtag 155841

>emb|AL117377.18|HSJ1037B9 Human DNA sequence from clone RP5-1037B9 on chromosome 20p12.1-13
             Contains STSs, GSSs and a putative CpG island, complete
             sequence
          Length = 82183

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   cacatcaaacttggaagaca 185
             ||||||||||||||||||||
Sbjct: 72891 cacatcaaacttggaagaca 72872

>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 230     cccccatcagaaagaaattcactc 253
               ||||||||||||| ||||||||||
Sbjct: 1961051 cccccatcagaaacaaattcactc 1961028

>dbj|AK127591.1| Homo sapiens cDNA FLJ45686 fis, clone FCBBF3012443
          Length = 3797

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  tgctggatttgcacaacaac 74
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573

>gb|AC103676.2| Homo sapiens chromosome 18, clone CTD-3223E7, complete sequence
          Length = 199566

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tgaaatctaattgaagaggg 36
              ||||||||||||||||||||
Sbjct: 190952 tgaaatctaattgaagaggg 190971

>gb|AC016493.14| Homo sapiens chromosome 18, clone RP11-58G13, complete sequence
          Length = 163936

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    ttggaagacaaattggaatt 195
              ||||||||||||||||||||
Sbjct: 159892 ttggaagacaaattggaatt 159873

>gb|AC091555.6| Homo sapiens chromosome 18, clone CTD-2387I11, complete sequence
          Length = 86914

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   tgaaatctaattgaagaggg 36
            ||||||||||||||||||||
Sbjct: 9286 tgaaatctaattgaagaggg 9267

>gb|AC079064.6| Homo sapiens chromosome 11, clone RP11-485O14, complete sequence
          Length = 164009

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 234   catcagaaagaaattcactcagaa 257
             ||||||||| ||||||||||||||
Sbjct: 52709 catcagaaaaaaattcactcagaa 52732

>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence
          Length = 166503

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   ttggaagacaaattggaatt 195
             ||||||||||||||||||||
Sbjct: 50150 ttggaagacaaattggaatt 50131

>dbj|AP001786.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-176J24, complete
             sequences
          Length = 171744

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    tgctggatttgcacaacaac 74
             ||||||||||||||||||||
Sbjct: 92890 tgctggatttgcacaacaac 92909

>gb|DQ151348.1| Petromyzon marinus clone T.D8 variable lymphocyte receptor
           diversity region (VLR) mRNA, partial cds
          Length = 534

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  tgctggatttgcacaacaac 74
           ||||||||||||||||||||
Sbjct: 263 tgctggatttgcacaacaac 282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,257,978
Number of Sequences: 3902068
Number of extensions: 3257978
Number of successful extensions: 59688
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59657
Number of HSP's gapped (non-prelim): 31
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)