ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58g04 |
|---|---|
| Clone Library Name | barley_pub |
>HUT1_CANAL (Q5ADN8) UDP-galactose transporter homolog 1| Length = 370 Score = 49.3 bits (116), Expect = 2e-06 Identities = 21/54 (38%), Positives = 37/54 (68%) Frame = -1 Query: 289 TITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWKRKKGRDHK 128 T T TRK +S+++S ++ G+ LS EQW V +VF G+ L+ ++K+K++ + K Sbjct: 311 TATVTRKMLSMILSVILFGHHLSWEQWVGVGLVFGGIGLEAFIKFKQQSQQKMK 364
>HUT1_CANGA (Q6FSF8) UDP-galactose transporter homolog 1| Length = 362 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/53 (37%), Positives = 34/53 (64%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWKRKKGRDHK 128 IT TRK MS+++S ++ G ++ QW +V+VFSG++ + K + KK + K Sbjct: 305 ITVTRKMMSMLLSIIVFGKTVNATQWLGIVIVFSGITWEALDKRREKKALEAK 357
>S35B1_RAT (Q6V7K3) Solute carrier family 35 member B1 (UDP-galactose| transporter-related protein 1) (UGTrel1) Length = 322 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/38 (52%), Positives = 26/38 (68%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 ITTTRKF +I+ S ++ NP+S QW V+VF GL L Sbjct: 272 ITTTRKFFTILASVILFANPISSMQWVGTVLVFLGLGL 309
>S35B1_MOUSE (P97858) Solute carrier family 35 member B1 (UDP-galactose| transporter-related protein 1) (UGTrel1) (UDP-galactose translocator 2) Length = 322 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/38 (52%), Positives = 26/38 (68%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 ITTTRKF +I+ S ++ NP+S QW V+VF GL L Sbjct: 272 ITTTRKFFTILASVILFANPISSMQWVGTVLVFLGLGL 309
>S35B1_CHICK (Q8AWB6) Solute carrier family 35 member B1 (Endoplasmic reticulum| nucleotide sugar transporter 1) Length = 325 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/38 (52%), Positives = 26/38 (68%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 ITTTRKF +I+ S ++ NP+S QW V+VF GL L Sbjct: 275 ITTTRKFFTILASVILFANPISTMQWVGTVLVFLGLGL 312
>S35B1_HUMAN (P78383) Solute carrier family 35 member B1 (UDP-galactose| transporter-related protein 1) (UGTrel1) (hUGTrel1) Length = 322 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/38 (52%), Positives = 26/38 (68%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 ITTTRKF +I+ S ++ NP+S QW V+VF GL L Sbjct: 272 ITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGL 309
>S35B1_BOVIN (Q8MII5) Solute carrier family 35 member B1 (Endoplasmic reticulum| nucleotide sugar transporter 1) Length = 322 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/38 (52%), Positives = 26/38 (68%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 ITTTRKF +I+ S ++ NP+S QW V+VF GL L Sbjct: 272 ITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGL 309
>S35B1_XENTR (Q8AXS6) Solute carrier family 35 member B1| Length = 323 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/38 (50%), Positives = 26/38 (68%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 ITTTRKF +I+ S ++ NP+S QW ++VF GL L Sbjct: 273 ITTTRKFFTILASVILFSNPISSIQWVGTILVFLGLGL 310
>S35B1_XENLA (Q6GQ70) Solute carrier family 35 member B1 (Endoplasmic reticulum| nucleotide sugar transporter 1) Length = 320 Score = 42.4 bits (98), Expect = 3e-04 Identities = 19/38 (50%), Positives = 26/38 (68%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 ITTTRKF +I+ S ++ NP+S QW ++VF GL L Sbjct: 270 ITTTRKFFTILASVILFSNPISSIQWVGTLLVFLGLGL 307
>HUT1_DEBHA (Q6BMV3) UDP-galactose transporter homolog 1| Length = 354 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/55 (36%), Positives = 32/55 (58%) Frame = -1 Query: 289 TITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWKRKKGRDHKE 125 T T TRK +S+++S V+ G+ L+ QWG V +VF G+ + +K K K+ Sbjct: 298 TSTVTRKMISMILSVVLFGHQLNGLQWGGVGLVFGGIGYEALVKMSMNKAPTTKK 352
>HUT1_ASHGO (Q755H7) UDP-galactose transporter homolog 1| Length = 324 Score = 40.8 bits (94), Expect = 9e-04 Identities = 18/55 (32%), Positives = 34/55 (61%) Frame = -1 Query: 289 TITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWKRKKGRDHKE 125 T+T TRK +S+++S V+ G+ + QW +++VF G+ + K +R G+ K+ Sbjct: 269 TVTVTRKMVSMLLSIVVYGHSVRPVQWLGILVVFGGIIWETVKKGQRGSGQKSKQ 323
>S35B1_BRARE (Q66HX0) Solute carrier family 35 member B1| Length = 329 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/38 (47%), Positives = 26/38 (68%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 +TTTRKF +I+ S ++ GN +S QW ++VF GL L Sbjct: 279 VTTTRKFFTILGSVLLFGNVISHMQWFGTILVFLGLGL 316
>HUT1_YARLI (Q6C4X5) UDP-galactose transporter homolog 1| Length = 365 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = -1 Query: 289 TITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWKR 149 T+ TRK S+++S V + L++ QW V VF G+ + ++K K+ Sbjct: 318 TVNVTRKMFSMLLSVVWFNHRLTLGQWAGVAAVFGGIGFEAWMKMKK 364
>HUT1_EMENI (Q5B5W2) UDP-galactose transporter homolog 1| Length = 424 Score = 37.7 bits (86), Expect = 0.008 Identities = 17/54 (31%), Positives = 32/54 (59%) Frame = -1 Query: 289 TITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWKRKKGRDHK 128 T+T TRK +++++S G+ LS QW + +VF G+ + ++ + KK + K Sbjct: 366 TVTVTRKMLTMLLSVFWFGHSLSAGQWLGIGLVFGGIGAEAVVQRQEKKAKAAK 419
>S35B1_DROME (Q9VDD7) Solute carrier family 35 member B1 homolog| Length = 338 Score = 37.7 bits (86), Expect = 0.008 Identities = 16/38 (42%), Positives = 25/38 (65%) Frame = -1 Query: 292 TTITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGL 179 + +TTTRKF +++ S ++ GN L QW V+VF+ L Sbjct: 269 SVVTTTRKFFTVLCSVLLFGNVLIARQWLGAVLVFAAL 306
>HUT1_KLULA (Q6CR04) UDP-galactose transporter homolog 1| Length = 339 Score = 37.4 bits (85), Expect = 0.010 Identities = 13/36 (36%), Positives = 27/36 (75%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGL 179 +T TRK S+++S ++ G+ +++ QW +V+VF+G+ Sbjct: 279 VTVTRKMFSMILSIIVYGHQVTLWQWVGIVIVFTGV 314
>HUT1_USTMA (Q4P9R2) UDP-galactose transporter homolog 1| Length = 384 Score = 37.4 bits (85), Expect = 0.010 Identities = 19/54 (35%), Positives = 35/54 (64%) Frame = -1 Query: 289 TITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWKRKKGRDHK 128 +IT TRK ++++S V+ + LS QW V +VF+G+ ++ + KR++G +K Sbjct: 320 SITVTRKLFTMLLSVVVYKHELSKLQWLGVAVVFAGIGIE--AREKRREGLANK 371
>HUT1_ASPFU (Q4WJM7) UDP-galactose transporter homolog 1| Length = 415 Score = 37.0 bits (84), Expect = 0.013 Identities = 15/52 (28%), Positives = 32/52 (61%) Frame = -1 Query: 289 TITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWKRKKGRD 134 T+T TRK +++++S G+ LS QW + +VF G+ + ++ + K+ ++ Sbjct: 354 TVTVTRKMLTMLLSVFWFGHTLSAGQWLGIGLVFGGIGAEAVVQKREKQSKE 405
>HUT1_YEAST (Q12520) UDP-galactose transporter homolog 1 (Multicopy suppressor| of leflunomide-sensitivity protein 6) Length = 339 Score = 36.6 bits (83), Expect = 0.017 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWK 152 IT TRK +S+++S ++ G + +QW + +VF G++ + K K Sbjct: 286 ITVTRKMVSMILSIIVFGKSVRFQQWVGMFIVFGGITWEALNKKK 330
>S35B3_PONPY (Q5R831) Solute carrier family 35 member B3| Length = 401 Score = 36.2 bits (82), Expect = 0.022 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = -1 Query: 289 TITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLK 158 T+TT RK M+IV+S + P + + S ++VF G+ L +Y K Sbjct: 328 TVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVFLGIFLNVYSK 371
>S35B4_DROME (Q9W429) UDP-xylose and UDP-N-acetylglucosamine transporter-like| Length = 352 Score = 35.0 bits (79), Expect = 0.049 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -1 Query: 292 TTITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 T + T RKF+S++ S + NP ++ W ++VF G L Sbjct: 281 TLVVTLRKFVSLLFSIIYFRNPFTLNHWVGTILVFFGTIL 320
>HUT1_SCHPO (Q8WZJ9) UDP-galactose transporter homolog 1| Length = 322 Score = 34.3 bits (77), Expect = 0.083 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = -1 Query: 289 TITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLK 158 TIT TRK ++++S + +S QW +++VF G+SL+ LK Sbjct: 266 TITLTRKIFTMLLSVFHFHHTVSSIQWLGILLVFLGISLEAGLK 309
>HUT1_CRYNE (Q5K915) UDP-galactose transporter homolog 1| Length = 412 Score = 33.5 bits (75), Expect = 0.14 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -1 Query: 286 ITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSLQIYLKWK 152 +T TRK ++++S V+ + L+ QW V +VF+G+ ++ +K K Sbjct: 359 VTVTRKLFTMLLSVVVFEHRLTKGQWLGVGVVFAGIGVEAGMKRK 403
>S35B4_BRARE (Q7ZW46) UDP-xylose and UDP-N-acetylglucosamine transporter (Solute| carrier family 35 member B4) Length = 331 Score = 33.1 bits (74), Expect = 0.19 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 292 TTITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSGLSL 173 T + T RKF+S++IS + NP + W +VF G L Sbjct: 270 TLVVTLRKFLSLIISILYFQNPFTAWHWVGTAVVFLGTLL 309
>S35B4_PONPY (Q5R8M3) UDP-xylose and UDP-N-acetylglucosamine transporter (Solute| carrier family 35 member B4) Length = 331 Score = 31.6 bits (70), Expect = 0.54 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 292 TTITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSG 182 T + T RKF+S++ S + NP ++ W + VF G Sbjct: 270 TLVVTLRKFVSLIFSILYFQNPFTLWHWLGTLFVFIG 306
>S35B4_MACFA (Q95KB4) UDP-xylose and UDP-N-acetylglucosamine transporter (Solute| carrier family 35 member B4) Length = 331 Score = 31.6 bits (70), Expect = 0.54 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 292 TTITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSG 182 T + T RKF+S++ S + NP ++ W + VF G Sbjct: 270 TLVVTLRKFVSLIFSILYFQNPFTLWHWLGTLFVFIG 306
>S35B4_HUMAN (Q969S0) UDP-xylose and UDP-N-acetylglucosamine transporter (Solute| carrier family 35 member B4) (YEA4 homolog) Length = 331 Score = 31.6 bits (70), Expect = 0.54 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 292 TTITTTRKFMSIVISSVISGNPLSMEQWGSVVMVFSG 182 T + T RKF+S++ S + NP ++ W + VF G Sbjct: 270 TLVVTLRKFVSLIFSILYFQNPFTLWHWLGTLFVFIG 306
>PTN12_MOUSE (P35831) Tyrosine-protein phosphatase non-receptor type 12 (EC| 3.1.3.48) (Protein-tyrosine phosphatase P19) (P19-PTP) (MPTP-PEST) Length = 775 Score = 30.8 bits (68), Expect = 0.92 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 191 DHHNTSPLLHGQWVTTDN**DDDAHELAGGGDGSV 295 +HHN+SPLL T+ DD H G DG+V Sbjct: 583 EHHNSSPLLKAPLSFTNPLHSDDWHSDGGSSDGAV 617
>IOD1_CHICK (O42411) Type I iodothyronine deiodinase (EC 1.97.1.10) (Type-I| 5'deiodinase) (DIOI) (Type 1 DI) (5DI) (Fragment) Length = 245 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = -1 Query: 283 TTTRKFMSIVISSVISGNP-LSMEQWGSVVMVFSGLSLQIYLKWKRKKGRDHK 128 TT R + + S ++ NP S E WG F L + +KW+R + H+ Sbjct: 33 TTKRYILKLGEKSRMNQNPKFSYENWGPTFFSFQYLLFVLKVKWRRLEDEAHE 85
>TFC1_YEAST (P32367) Transcription factor tau 95 kDa subunit (TFIIIC 95 kDa| subunit) Length = 649 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 177 ERPEKTITTLPHCSMDSGLPLITDEMTM 260 E P T++++P S D PLI DE T+ Sbjct: 4 EEPLATLSSIPDSSADQAPPLIADEFTL 31
>EPHB3_XENLA (Q91735) Ephrin type-B receptor 3 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor TCK) Length = 974 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +1 Query: 58 ISPQQMCAIKATNQNVLIRTKFIP 129 I Q+C ++ +NQN +RT+FIP Sbjct: 54 IRTYQVCNVRDSNQNNWLRTQFIP 77
>GLK1_DROME (Q03445) Glutamate receptor 1 precursor (Glutamate receptor I)| (dGLUR-I) (Kainate-selective glutamate receptor) Length = 991 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -1 Query: 232 NPLSMEQWGSVVMVFSGLSLQIY 164 NPLS E W SV++ + G+S +Y Sbjct: 607 NPLSQEIWISVILSYVGVSFVLY 629 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,434,183 Number of Sequences: 219361 Number of extensions: 743414 Number of successful extensions: 2118 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2080 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2118 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
