ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome... 141 9e-31
2gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome... 141 9e-31
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 141 9e-31
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 141 9e-31
5ref|XM_470882.1| Oryza sativa (japonica cultivar-group), mRNA 52 7e-04
6gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome... 52 7e-04
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 7e-04
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
9ref|XM_503336.1| Yarrowia lipolytica CLIB122, YALI0D26862g predi... 44 0.16
10gb|AC010503.8| Homo sapiens chromosome 19 clone CTD-2396E7, comp... 44 0.16
11emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 44 0.16
12emb|AL161621.11| Human DNA sequence from clone RP11-51G5 on chro... 42 0.63
13gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 0.63
14gb|AC132905.13| Mus musculus chromosome 13, clone RP24-295E18, c... 40 2.5
15gb|AY225134.1| Feldmannia irregularis virus a strain FirrV-1 con... 40 2.5
16gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, comp... 40 2.5
17gb|AC144935.3| Mus musculus BAC clone RP24-340M21 from chromosom... 40 2.5
18gb|AC107399.6| Homo sapiens BAC clone RP11-755N14 from 4, comple... 40 2.5
19gb|AC135241.3| Mus musculus chromosome UNK clone RP24-340G21, co... 40 2.5
20emb|AL133472.12| Human DNA sequence from clone RP1-177C7 on chro... 40 2.5
21emb|BX294028.1|NC103E1 Neurospora crassa DNA linkage group V Cos... 40 2.5
22emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 2.5
23gb|AC154830.2| Mus musculus BAC clone RP24-553I3 from chromosome... 40 2.5
24gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 2.5
25gb|AC121951.3| Mus musculus BAC clone RP24-217M7 from 9, complet... 40 2.5
26gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 2.5
27gb|AY427787.1| Bos taurus paternally expressed gene 3 (Peg3) mRN... 38 9.8
28gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, com... 38 9.8
29gb|AC091849.2| Homo sapiens chromosome 5 clone CTD-2245E15, comp... 38 9.8
30emb|BX890598.10| Zebrafish DNA sequence from clone DKEYP-22H4 in... 38 9.8
31emb|CR848687.8| Zebrafish DNA sequence from clone DKEY-46H11 in ... 38 9.8
32emb|AL691429.17| Human DNA sequence from clone RP13-137A17 on ch... 38 9.8
33emb|AL359994.7| Human DNA sequence from clone RP11-330A16 on chr... 38 9.8
34emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 38 9.8
35emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 38 9.8
36gb|AY786417.1| Rhizobium etli rmi operon, complete sequence 38 9.8
37gb|AF235100.4| Homo sapiens chromosome 8 clone RP11-98A24 map 8q... 38 9.8
38gb|CP000133.1| Rhizobium etli CFN 42, complete genome 38 9.8
39gb|AF339496.1|AF339496 Porcine reproductive and respiratory synd... 38 9.8
40dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
41gb|AC073091.5| Homo sapiens BAC clone RP11-335E8 from 2, complet... 38 9.8
42gb|AE004797.1| Pseudomonas aeruginosa PAO1, section 358 of 529 o... 38 9.8
43gb|AC008905.6|AC008905 Homo sapiens chromosome 5 clone CTD-2259I... 38 9.8
44gb|AC008865.3|AC008865 Homo sapiens chromosome 5 clone CTD-2193I... 38 9.8
45dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
46ref|NM_001002887.1| Bos taurus paternally expressed gene 3 (PEG3... 38 9.8
47dbj|AP002987.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 9.8
48gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 9.8
49gb|U66379.1|PRU66379 Porcine reproductive and respiratory syndro... 38 9.8 
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0008H02, complete sequence
          Length = 143438

 Score =  141 bits (71), Expect = 9e-31
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                        
Query: 104  atcatatctcgtccatgagctcctggaaagcgtccatggcggaggccggcaggccgagca 163
            |||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |
Sbjct: 4802 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 4743

                                               
Query: 164  ggacgttgatgctcttcctctccttgccgtgcgcg 198
            |||||||||||||||||||||||| ||||||||||
Sbjct: 4742 ggacgttgatgctcttcctctcctcgccgtgcgcg 4708
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>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0028G07, complete sequence
          Length = 157463

 Score =  141 bits (71), Expect = 9e-31
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                         
Query: 104   atcatatctcgtccatgagctcctggaaagcgtccatggcggaggccggcaggccgagca 163
             |||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |
Sbjct: 91119 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 91060

                                                
Query: 164   ggacgttgatgctcttcctctccttgccgtgcgcg 198
             |||||||||||||||||||||||| ||||||||||
Sbjct: 91059 ggacgttgatgctcttcctctcctcgccgtgcgcg 91025
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  141 bits (71), Expect = 9e-31
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                            
Query: 104      atcatatctcgtccatgagctcctggaaagcgtccatggcggaggccggcaggccgagca 163
                |||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |
Sbjct: 17497105 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 17497046

                                                   
Query: 164      ggacgttgatgctcttcctctccttgccgtgcgcg 198
                |||||||||||||||||||||||| ||||||||||
Sbjct: 17497045 ggacgttgatgctcttcctctcctcgccgtgcgcg 17497011
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  141 bits (71), Expect = 9e-31
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                            
Query: 104      atcatatctcgtccatgagctcctggaaagcgtccatggcggaggccggcaggccgagca 163
                |||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |
Sbjct: 17590815 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 17590756

                                                   
Query: 164      ggacgttgatgctcttcctctccttgccgtgcgcg 198
                |||||||||||||||||||||||| ||||||||||
Sbjct: 17590755 ggacgttgatgctcttcctctcctcgccgtgcgcg 17590721
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>ref|XM_470882.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 456

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 154 aggccgagcaggacgttgatgctcttcctctccttgccgtgc 195
           ||||| |||| ||| ||||||||||| |||||||||||||||
Sbjct: 264 aggccaagcaagacattgatgctctttctctccttgccgtgc 223
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>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0087G11, complete sequence
          Length = 169728

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 154   aggccgagcaggacgttgatgctcttcctctccttgccgtgc 195
             ||||| |||| ||| ||||||||||| |||||||||||||||
Sbjct: 90404 aggccaagcaagacattgatgctctttctctccttgccgtgc 90363
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 154      aggccgagcaggacgttgatgctcttcctctccttgccgtgc 195
                ||||| |||| ||| ||||||||||| |||||||||||||||
Sbjct: 15960013 aggccaagcaagacattgatgctctttctctccttgccgtgc 15960054
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 154      aggccgagcaggacgttgatgctcttcctctccttgccgtgc 195
                ||||| |||| ||| ||||||||||| |||||||||||||||
Sbjct: 15954547 aggccaagcaagacattgatgctctttctctccttgccgtgc 15954588
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>ref|XM_503336.1| Yarrowia lipolytica CLIB122, YALI0D26862g predicted mRNA
          Length = 1491

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 111 ctcgtccatgagctcctggaaa 132
           ||||||||||||||||||||||
Sbjct: 825 ctcgtccatgagctcctggaaa 804
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>gb|AC010503.8| Homo sapiens chromosome 19 clone CTD-2396E7, complete sequence
          Length = 141295

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 170    tgatgctcttcctctccttgcc 191
              ||||||||||||||||||||||
Sbjct: 126597 tgatgctcttcctctccttgcc 126618
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 111     ctcgtccatgagctcctggaaa 132
               ||||||||||||||||||||||
Sbjct: 3575663 ctcgtccatgagctcctggaaa 3575642
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>emb|AL161621.11| Human DNA sequence from clone RP11-51G5 on chromosome 6 Contains two
             novel genes and a CpG island, complete sequence
          Length = 96715

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 172   atgctcttcctctccttgccg 192
             |||||||||||||||||||||
Sbjct: 12727 atgctcttcctctccttgccg 12707
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 141     ggcggaggccggcaggccgagcagg 165
               ||||| |||||||||||||||||||
Sbjct: 3166984 ggcggtggccggcaggccgagcagg 3167008
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>gb|AC132905.13| Mus musculus chromosome 13, clone RP24-295E18, complete sequence
          Length = 187116

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  atgctcttcctctccttgcc 191
            ||||||||||||||||||||
Sbjct: 8196 atgctcttcctctccttgcc 8215
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>gb|AY225134.1| Feldmannia irregularis virus a strain FirrV-1 contig B, partial
             sequence
          Length = 48352

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 113   cgtccatgagctcctggaaagcgtccat 140
             ||||||||| || |||||||||||||||
Sbjct: 25508 cgtccatgacctactggaaagcgtccat 25481
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>gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, complete sequence
          Length = 206029

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gacgttgatgctcttcctct 184
             ||||||||||||||||||||
Sbjct: 66900 gacgttgatgctcttcctct 66881
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>gb|AC144935.3| Mus musculus BAC clone RP24-340M21 from chromosome 9, complete sequence
          Length = 109624

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   tgagctcctggaaagcgtccatgg 142
             |||||||||||||||| |||||||
Sbjct: 10897 tgagctcctggaaagcatccatgg 10874
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>gb|AC107399.6| Homo sapiens BAC clone RP11-755N14 from 4, complete sequence
          Length = 152877

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   atgctcttcctctccttgcc 191
             ||||||||||||||||||||
Sbjct: 76330 atgctcttcctctccttgcc 76349
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>gb|AC135241.3| Mus musculus chromosome UNK clone RP24-340G21, complete sequence
          Length = 109610

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   tgagctcctggaaagcgtccatgg 142
             |||||||||||||||| |||||||
Sbjct: 10897 tgagctcctggaaagcatccatgg 10874
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>emb|AL133472.12| Human DNA sequence from clone RP1-177C7 on chromosome 6 Contains the 5'
             end of the gene for a novel protein (FLJ30976) and the 5'
             end of the KIAA0274 gene (similar to the novel protein
             CG17840). Contains a CpG island, complete sequence
          Length = 87434

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   atgctcttcctctccttgcc 191
             ||||||||||||||||||||
Sbjct: 52642 atgctcttcctctccttgcc 52661
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>emb|BX294028.1|NC103E1 Neurospora crassa DNA linkage group V Cosmid contig 103E1
          Length = 87435

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   atgctcttcctctccttgcc 191
             ||||||||||||||||||||
Sbjct: 57713 atgctcttcctctccttgcc 57732
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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   ccggcaggccgagcaggacg 168
             ||||||||||||||||||||
Sbjct: 28601 ccggcaggccgagcaggacg 28582
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>gb|AC154830.2| Mus musculus BAC clone RP24-553I3 from chromosome 13, complete sequence
          Length = 178942

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   atgctcttcctctccttgcc 191
             ||||||||||||||||||||
Sbjct: 36537 atgctcttcctctccttgcc 36518
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    caggccgagcaggacgttga 172
              ||||||||||||||||||||
Sbjct: 221646 caggccgagcaggacgttga 221627
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>gb|AC121951.3| Mus musculus BAC clone RP24-217M7 from 9, complete sequence
          Length = 163528

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 119    tgagctcctggaaagcgtccatgg 142
              |||||||||||||||| |||||||
Sbjct: 127655 tgagctcctggaaagcatccatgg 127632
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    ggccggcaggccgagcagga 166
              ||||||||||||||||||||
Sbjct: 412840 ggccggcaggccgagcagga 412859
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>gb|AY427787.1| Bos taurus paternally expressed gene 3 (Peg3) mRNA, complete cds
          Length = 11076

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    aaccatactaacaaaccaa 37
             |||||||||||||||||||
Sbjct: 11029 aaccatactaacaaaccaa 11011
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>gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, complete sequence
          Length = 164107

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    ataataacacaatgtatat 68
             |||||||||||||||||||
Sbjct: 80411 ataataacacaatgtatat 80429
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>gb|AC091849.2| Homo sapiens chromosome 5 clone CTD-2245E15, complete sequence
          Length = 131371

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 135   gtccatggcggaggccggcaggc 157
             ||||||||| |||||||||||||
Sbjct: 64118 gtccatggctgaggccggcaggc 64140
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>emb|BX890598.10| Zebrafish DNA sequence from clone DKEYP-22H4 in linkage group 7, complete
              sequence
          Length = 177943

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     aaccatactaacaaaccaa 37
              |||||||||||||||||||
Sbjct: 161201 aaccatactaacaaaccaa 161219
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>emb|CR848687.8| Zebrafish DNA sequence from clone DKEY-46H11 in linkage group 7,
             complete sequence
          Length = 87887

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    aaccatactaacaaaccaa 37
             |||||||||||||||||||
Sbjct: 82011 aaccatactaacaaaccaa 82029
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>emb|AL691429.17| Human DNA sequence from clone RP13-137A17 on chromosome 10 Contains the
             5' end of a novel gene, four novel genes and nine CpG
             islands, complete sequence
          Length = 136299

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 116   ccatgagctcctggaaagc 134
             |||||||||||||||||||
Sbjct: 26133 ccatgagctcctggaaagc 26115
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>emb|AL359994.7| Human DNA sequence from clone RP11-330A16 on chromosome 6 Contains the
             3' end of a novel gene, complete sequence
          Length = 32695

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 170   tgatgctcttcctctcctt 188
             |||||||||||||||||||
Sbjct: 10866 tgatgctcttcctctcctt 10848
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 147    ggccggcaggccgagcagg 165
              |||||||||||||||||||
Sbjct: 221450 ggccggcaggccgagcagg 221432
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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 150    cggcaggccgagcaggacg 168
              |||||||||||||||||||
Sbjct: 125158 cggcaggccgagcaggacg 125140
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>gb|AY786417.1| Rhizobium etli rmi operon, complete sequence
          Length = 7820

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 145  gaggccggcaggccgagca 163
            |||||||||||||||||||
Sbjct: 6481 gaggccggcaggccgagca 6463
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>gb|AF235100.4| Homo sapiens chromosome 8 clone RP11-98A24 map 8q24.3 , complete
             sequence
          Length = 129619

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 169   ttgatgctcttcctctccttgcc 191
             |||| ||||||||||||||||||
Sbjct: 88440 ttgaggctcttcctctccttgcc 88462
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 145     gaggccggcaggccgagca 163
               |||||||||||||||||||
Sbjct: 3589935 gaggccggcaggccgagca 3589917
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>gb|AF339496.1|AF339496 Porcine reproductive and respiratory syndrome virus 98-4236-2
           envelope glycoprotein gene, complete cds
          Length = 603

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  tagccaaccaatctgtgcc 102
           |||||||||||||||||||
Sbjct: 172 tagccaaccaatctgtgcc 154
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 133     gcgtccatggcggaggccg 151
               |||||||||||||||||||
Sbjct: 8888298 gcgtccatggcggaggccg 8888280
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>gb|AC073091.5| Homo sapiens BAC clone RP11-335E8 from 2, complete sequence
          Length = 185174

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 172    atgctcttcctctccttgc 190
              |||||||||||||||||||
Sbjct: 115440 atgctcttcctctccttgc 115458
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>gb|AE004797.1| Pseudomonas aeruginosa PAO1, section 358 of 529 of the complete
            genome
          Length = 12378

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 150  cggcaggccgagcaggacgttga 172
            ||||||||||||||||| |||||
Sbjct: 1769 cggcaggccgagcaggaggttga 1747
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>gb|AC008905.6|AC008905 Homo sapiens chromosome 5 clone CTD-2259I14, complete sequence
          Length = 129430

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    accatactaacaaaccaac 38
             |||||||||||||||||||
Sbjct: 58571 accatactaacaaaccaac 58589
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>gb|AC008865.3|AC008865 Homo sapiens chromosome 5 clone CTD-2193I10, complete sequence
          Length = 191162

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     accatactaacaaaccaac 38
              |||||||||||||||||||
Sbjct: 113258 accatactaacaaaccaac 113276
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>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0528B02
          Length = 144495

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 133   gcgtccatggcggaggccg 151
             |||||||||||||||||||
Sbjct: 53927 gcgtccatggcggaggccg 53909
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>ref|NM_001002887.1| Bos taurus paternally expressed gene 3 (PEG3), mRNA
          Length = 11076

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    aaccatactaacaaaccaa 37
             |||||||||||||||||||
Sbjct: 11029 aaccatactaacaaaccaa 11011
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>dbj|AP002987.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-428C14, complete
             sequence
          Length = 166893

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 170   tgatgctcttcctctcctt 188
             |||||||||||||||||||
Sbjct: 86934 tgatgctcttcctctcctt 86916
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 146     aggccggcaggccgagcag 164
               |||||||||||||||||||
Sbjct: 3206833 aggccggcaggccgagcag 3206815
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>gb|U66379.1|PRU66379 Porcine reproductive and respiratory syndrome virus envelope
           protein (env) gene, complete cds
          Length = 603

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  tagccaaccaatctgtgcc 102
           |||||||||||||||||||
Sbjct: 172 tagccaaccaatctgtgcc 154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,347,184
Number of Sequences: 3902068
Number of extensions: 1347184
Number of successful extensions: 105547
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104869
Number of HSP's gapped (non-prelim): 678
length of query: 198
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 176
effective length of database: 17,147,199,772
effective search space: 3017907159872
effective search space used: 3017907159872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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