ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018978.1| Zea mays clone Contig414.F mRNA sequence 167 3e-38
2gb|AY103684.1| Zea mays PCO137813 mRNA sequence 167 3e-38
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
4dbj|AK104114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
5dbj|AK101325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 155 1e-34
7emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb... 155 1e-34
8dbj|AK060041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
9gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome... 98 2e-17
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
11dbj|AK106183.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
12dbj|AK104131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
13dbj|AK068515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 98 2e-17
15ref|NM_116123.2| Arabidopsis thaliana unknown protein AT3G62580 ... 70 5e-09
16emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BA... 70 5e-09
17gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 68 2e-08
18gb|BT001001.1| Arabidopsis thaliana At3g62580/T12C14_280 mRNA, c... 62 1e-06
19gb|AF411796.1|AF411796 Arabidopsis thaliana AT3g62580/T12C14_280... 62 1e-06
20gb|AC069469.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 44 0.26
21gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductas... 40 4.0
22ref|XM_815254.1| Trypanosoma cruzi strain CL Brener 2,3-bisphosp... 40 4.0
23ref|XM_782519.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.0
24gb|AC021851.5| Homo sapiens BAC clone RP11-438L19 from 2, comple... 40 4.0
25gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, com... 40 4.0 
>gb|BT018978.1| Zea mays clone Contig414.F mRNA sequence
          Length = 927

 Score =  167 bits (84), Expect = 3e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                       
Query: 160 cttcacagctcaagcttgctggcaagataccaagagtgcatggcaaggctgccaaacgac 219
           ||||||||||| ||||||||||| || ||||| ||||||||||| | ||| |||||||||
Sbjct: 241 cttcacagctccagcttgctggccaggtaccaggagtgcatggccaagctaccaaacgac 300

                                                                       
Query: 220 atgatgttggccagcgatgagagaccgtggatcatcccaaacttcttgttcatcgcagca 279
           |||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 301 atgatgttggccagtgatgacagcccgtggatcatcccaaacttcttgttcattgcagca 360

                       
Query: 280 agggtagggttg 291
           ||||| ||||||
Sbjct: 361 agggtggggttg 372
to top
>gb|AY103684.1| Zea mays PCO137813 mRNA sequence
          Length = 988

 Score =  167 bits (84), Expect = 3e-38
 Identities = 120/132 (90%)
 Strand = Plus / Minus

                                                                       
Query: 160 cttcacagctcaagcttgctggcaagataccaagagtgcatggcaaggctgccaaacgac 219
           ||||||||||| ||||||||||| || ||||| ||||||||||| | ||| |||||||||
Sbjct: 741 cttcacagctccagcttgctggccaggtaccaggagtgcatggccaagctaccaaacgac 682

                                                                       
Query: 220 atgatgttggccagcgatgagagaccgtggatcatcccaaacttcttgttcatcgcagca 279
           |||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 681 atgatgttggccagtgatgacagcccgtggatcatcccaaacttcttgttcattgcagca 622

                       
Query: 280 agggtagggttg 291
           ||||| ||||||
Sbjct: 621 agggtggggttg 610
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  155 bits (78), Expect = 1e-34
 Identities = 135/154 (87%)
 Strand = Plus / Plus

                                                                            
Query: 147      gggtgcttgtgcgcttcacagctcaagcttgctggcaagataccaagagtgcatggcaag 206
                ||||| |||| | ||||||| |||||||||||| ||||| ||||| || |||||||| ||
Sbjct: 22744685 gggtgtttgttcacttcacatctcaagcttgctagcaaggtaccaggaatgcatggctag 22744744

                                                                            
Query: 207      gctgccaaacgacatgatgttggccagcgatgagagaccgtggatcatcccaaacttctt 266
                |||||| || ||||||||||||||||  || ||||| |||||||||||||||||||||||
Sbjct: 22744745 gctgccgaatgacatgatgttggccaaagacgagagcccgtggatcatcccaaacttctt 22744804

                                                  
Query: 267      gttcatcgcagcaagggtagggttgctttttgcc 300
                ||| || || ||||||||||||||| ||||||||
Sbjct: 22744805 gttgattgcggcaagggtagggttgttttttgcc 22744838
to top
>dbj|AK104114.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-H10, full
           insert sequence
          Length = 962

 Score =  155 bits (78), Expect = 1e-34
 Identities = 135/154 (87%)
 Strand = Plus / Minus

                                                                       
Query: 147 gggtgcttgtgcgcttcacagctcaagcttgctggcaagataccaagagtgcatggcaag 206
           ||||| |||| | ||||||| |||||||||||| ||||| ||||| || |||||||| ||
Sbjct: 773 gggtgtttgttcacttcacatctcaagcttgctagcaaggtaccaggaatgcatggctag 714

                                                                       
Query: 207 gctgccaaacgacatgatgttggccagcgatgagagaccgtggatcatcccaaacttctt 266
           |||||| || ||||||||||||||||  || ||||| |||||||||||||||||||||||
Sbjct: 713 gctgccgaatgacatgatgttggccaaagacgagagcccgtggatcatcccaaacttctt 654

                                             
Query: 267 gttcatcgcagcaagggtagggttgctttttgcc 300
           ||| || || ||||||||||||||| ||||||||
Sbjct: 653 gttgattgcggcaagggtagggttgttttttgcc 620
to top
>dbj|AK101325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034F22, full
           insert sequence
          Length = 949

 Score =  155 bits (78), Expect = 1e-34
 Identities = 135/154 (87%)
 Strand = Plus / Minus

                                                                       
Query: 147 gggtgcttgtgcgcttcacagctcaagcttgctggcaagataccaagagtgcatggcaag 206
           ||||| |||| | ||||||| |||||||||||| ||||| ||||| || |||||||| ||
Sbjct: 770 gggtgtttgttcacttcacatctcaagcttgctagcaaggtaccaggaatgcatggctag 711

                                                                       
Query: 207 gctgccaaacgacatgatgttggccagcgatgagagaccgtggatcatcccaaacttctt 266
           |||||| || ||||||||||||||||  || ||||| |||||||||||||||||||||||
Sbjct: 710 gctgccgaatgacatgatgttggccaaagacgagagcccgtggatcatcccaaacttctt 651

                                             
Query: 267 gttcatcgcagcaagggtagggttgctttttgcc 300
           ||| || || ||||||||||||||| ||||||||
Sbjct: 650 gttgattgcggcaagggtagggttgttttttgcc 617
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  155 bits (78), Expect = 1e-34
 Identities = 135/154 (87%)
 Strand = Plus / Plus

                                                                            
Query: 147      gggtgcttgtgcgcttcacagctcaagcttgctggcaagataccaagagtgcatggcaag 206
                ||||| |||| | ||||||| |||||||||||| ||||| ||||| || |||||||| ||
Sbjct: 22672876 gggtgtttgttcacttcacatctcaagcttgctagcaaggtaccaggaatgcatggctag 22672935

                                                                            
Query: 207      gctgccaaacgacatgatgttggccagcgatgagagaccgtggatcatcccaaacttctt 266
                |||||| || ||||||||||||||||  || ||||| |||||||||||||||||||||||
Sbjct: 22672936 gctgccgaatgacatgatgttggccaaagacgagagcccgtggatcatcccaaacttctt 22672995

                                                  
Query: 267      gttcatcgcagcaagggtagggttgctttttgcc 300
                ||| || || ||||||||||||||| ||||||||
Sbjct: 22672996 gttgattgcggcaagggtagggttgttttttgcc 22673029
to top
>emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb0092G12 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131603

 Score =  155 bits (78), Expect = 1e-34
 Identities = 135/154 (87%)
 Strand = Plus / Plus

                                                                         
Query: 147   gggtgcttgtgcgcttcacagctcaagcttgctggcaagataccaagagtgcatggcaag 206
             ||||| |||| | ||||||| |||||||||||| ||||| ||||| || |||||||| ||
Sbjct: 56535 gggtgtttgttcacttcacatctcaagcttgctagcaaggtaccaggaatgcatggctag 56594

                                                                         
Query: 207   gctgccaaacgacatgatgttggccagcgatgagagaccgtggatcatcccaaacttctt 266
             |||||| || ||||||||||||||||  || ||||| |||||||||||||||||||||||
Sbjct: 56595 gctgccgaatgacatgatgttggccaaagacgagagcccgtggatcatcccaaacttctt 56654

                                               
Query: 267   gttcatcgcagcaagggtagggttgctttttgcc 300
             ||| || || ||||||||||||||| ||||||||
Sbjct: 56655 gttgattgcggcaagggtagggttgttttttgcc 56688
to top
>dbj|AK060041.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C08, full
           insert sequence
          Length = 985

 Score =  149 bits (75), Expect = 6e-33
 Identities = 132/151 (87%)
 Strand = Plus / Minus

                                                                       
Query: 147 gggtgcttgtgcgcttcacagctcaagcttgctggcaagataccaagagtgcatggcaag 206
           ||||| |||| | ||||||| |||||||||||| ||||| ||||| || |||||||| ||
Sbjct: 796 gggtgtttgttcacttcacatctcaagcttgctagcaaggtaccaggaatgcatggctag 737

                                                                       
Query: 207 gctgccaaacgacatgatgttggccagcgatgagagaccgtggatcatcccaaacttctt 266
           |||||| || ||||||||||||||||  || ||||| |||||||||||||||||||||||
Sbjct: 736 gctgccgaatgacatgatgttggccaaagacgagagcccgtggatcatcccaaacttctt 677

                                          
Query: 267 gttcatcgcagcaagggtagggttgcttttt 297
           ||| || || ||||||||||||||| |||||
Sbjct: 676 gttgattgcggcaagggtagggttgtttttt 646
to top
>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0004D06, complete sequence
          Length = 157547

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                         
Query: 172   agcttgctggcaagataccaagagtgcatggcaaggctgccaaacgacatgatgttggcc 231
             ||||||||||| || ||||| |||||||| |||||||| || |||| |||||||||||||
Sbjct: 38584 agcttgctggcgaggtaccaggagtgcattgcaaggctaccgaacgccatgatgttggcc 38643

                                                      
Query: 232   agcgatgagagaccgtggatcatcccaaacttcttgttcat 272
             || || || || || ||||||||||| ||||||||||||||
Sbjct: 38644 agagacgacaggccatggatcatcccgaacttcttgttcat 38684
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                            
Query: 172      agcttgctggcaagataccaagagtgcatggcaaggctgccaaacgacatgatgttggcc 231
                ||||||||||| || ||||| |||||||| |||||||| || |||| |||||||||||||
Sbjct: 26336752 agcttgctggcgaggtaccaggagtgcattgcaaggctaccgaacgccatgatgttggcc 26336811

                                                         
Query: 232      agcgatgagagaccgtggatcatcccaaacttcttgttcat 272
                || || || || || ||||||||||| ||||||||||||||
Sbjct: 26336812 agagacgacaggccatggatcatcccgaacttcttgttcat 26336852
to top
>dbj|AK106183.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D05, full
           insert sequence
          Length = 924

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                       
Query: 172 agcttgctggcaagataccaagagtgcatggcaaggctgccaaacgacatgatgttggcc 231
           ||||||||||| || ||||| |||||||| |||||||| || |||| |||||||||||||
Sbjct: 744 agcttgctggcgaggtaccaggagtgcattgcaaggctaccgaacgccatgatgttggcc 685

                                                    
Query: 232 agcgatgagagaccgtggatcatcccaaacttcttgttcat 272
           || || || || || ||||||||||| ||||||||||||||
Sbjct: 684 agagacgacaggccatggatcatcccgaacttcttgttcat 644
to top
>dbj|AK104131.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D03, full
           insert sequence
          Length = 907

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                       
Query: 172 agcttgctggcaagataccaagagtgcatggcaaggctgccaaacgacatgatgttggcc 231
           ||||||||||| || ||||| |||||||| |||||||| || |||| |||||||||||||
Sbjct: 738 agcttgctggcgaggtaccaggagtgcattgcaaggctaccgaacgccatgatgttggcc 679

                                                    
Query: 232 agcgatgagagaccgtggatcatcccaaacttcttgttcat 272
           || || || || || ||||||||||| ||||||||||||||
Sbjct: 678 agagacgacaggccatggatcatcccgaacttcttgttcat 638
to top
>dbj|AK068515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153K10, full
           insert sequence
          Length = 925

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                       
Query: 172 agcttgctggcaagataccaagagtgcatggcaaggctgccaaacgacatgatgttggcc 231
           ||||||||||| || ||||| |||||||| |||||||| || |||| |||||||||||||
Sbjct: 747 agcttgctggcgaggtaccaggagtgcattgcaaggctaccgaacgccatgatgttggcc 688

                                                    
Query: 232 agcgatgagagaccgtggatcatcccaaacttcttgttcat 272
           || || || || || ||||||||||| ||||||||||||||
Sbjct: 687 agagacgacaggccatggatcatcccgaacttcttgttcat 647
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                            
Query: 172      agcttgctggcaagataccaagagtgcatggcaaggctgccaaacgacatgatgttggcc 231
                ||||||||||| || ||||| |||||||| |||||||| || |||| |||||||||||||
Sbjct: 26651010 agcttgctggcgaggtaccaggagtgcattgcaaggctaccgaacgccatgatgttggcc 26651069

                                                         
Query: 232      agcgatgagagaccgtggatcatcccaaacttcttgttcat 272
                || || || || || ||||||||||| ||||||||||||||
Sbjct: 26651070 agagacgacaggccatggatcatcccgaacttcttgttcat 26651110
to top
>ref|NM_116123.2| Arabidopsis thaliana unknown protein AT3G62580 mRNA, complete cds
          Length = 1360

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                       
Query: 184 agataccaagagtgcatggcaaggctgccaaacgacatgatgttggccagcgatgagaga 243
           ||||||||||| ||||| |||||||| ||||| || | |||||| || || ||||| |  
Sbjct: 723 agataccaagaatgcatagcaaggcttccaaatgaaaagatgttagcaagggatgataac 664

                                              
Query: 244 ccgtggatcatcccaaacttcttgttcatcgcagc 278
           ||||| ||||| ||||||||||||||||| |||||
Sbjct: 663 ccgtgaatcattccaaacttcttgttcatagcagc 629
to top
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9
          Length = 110257

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                       
Query: 184 agataccaagagtgcatggcaaggctgccaaacgacatgatgttggccagcgatgagaga 243
           ||||||||||| ||||| |||||||| ||||| || | |||||| || || ||||| |  
Sbjct: 688 agataccaagaatgcatagcaaggcttccaaatgaaaagatgttagcaagggatgataac 629

                                              
Query: 244 ccgtggatcatcccaaacttcttgttcatcgcagc 278
           ||||| ||||| ||||||||||||||||| |||||
Sbjct: 628 ccgtgaatcattccaaacttcttgttcatagcagc 594
to top
>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
            clone KBrH001H24, complete sequence
          Length = 118144

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                        
Query: 181  gcaagataccaagagtgcatggcaaggctgccaaacgacatgatgttggccagcgatgag 240
            ||||| |||||||| |||||||||||||| || || || | |||||| || || ||||| 
Sbjct: 3009 gcaaggtaccaagaatgcatggcaaggcttccgaaagaaaagatgttagctagagatgac 2950

                                                  
Query: 241  agaccgtggatcatcccaaacttcttgttcatcgcagc 278
            |  ||||| ||||| ||||||||||||||||| |||||
Sbjct: 2949 aagccgtgaatcataccaaacttcttgttcatggcagc 2912
to top
>gb|BT001001.1| Arabidopsis thaliana At3g62580/T12C14_280 mRNA, complete cds
          Length = 621

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 80/95 (84%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                       
Query: 184 agataccaagagtgcatggcaaggctgccaaacgacatgatgttggccagcgatgagaga 243
           ||||||||||| ||||| |||||||| ||||| || | |||||| || || ||||| |  
Sbjct: 619 agataccaagaatgcatagcaaggcttccaaatgaaaagatgttagcaag-gatgataac 561

                                              
Query: 244 ccgtggatcatcccaaacttcttgttcatcgcagc 278
           ||||| ||||| ||||||||||||||||| |||||
Sbjct: 560 ccgtgaatcattccaaacttcttgttcatagcagc 526
to top
>gb|AF411796.1|AF411796 Arabidopsis thaliana AT3g62580/T12C14_280 mRNA, complete cds
          Length = 801

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 80/95 (84%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                       
Query: 184 agataccaagagtgcatggcaaggctgccaaacgacatgatgttggccagcgatgagaga 243
           ||||||||||| ||||| |||||||| ||||| || | |||||| || || ||||| |  
Sbjct: 630 agataccaagaatgcatagcaaggcttccaaatgaaaagatgttagcaag-gatgataac 572

                                              
Query: 244 ccgtggatcatcccaaacttcttgttcatcgcagc 278
           ||||| ||||| ||||||||||||||||| |||||
Sbjct: 571 ccgtgaatcattccaaacttcttgttcatagcagc 537
to top
>gb|AC069469.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-75J13, complete
             sequence
          Length = 172786

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 113   tgatactaaattcaaccgtgtt 134
             ||||||||||||||||||||||
Sbjct: 50385 tgatactaaattcaaccgtgtt 50364
to top
>gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductase (FOR) gene, exons 8, 9, and
              partial cds
          Length = 270752

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    tgcatggcaaggctgccaaa 215
              ||||||||||||||||||||
Sbjct: 189480 tgcatggcaaggctgccaaa 189461
to top
>ref|XM_815254.1| Trypanosoma cruzi strain CL Brener
           2,3-bisphosphoglycerate-independent phosphoglycerate
           mutase (Tc00.1047053506247.330) partial mRNA
          Length = 1665

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 taaattcaaccgtgttcgtg 138
           ||||||||||||||||||||
Sbjct: 897 taaattcaaccgtgttcgtg 916
to top
>ref|XM_782519.1| PREDICTED: Strongylocentrotus purpuratus similar to lysosomal
            trafficking regulator (LOC582574), mRNA
          Length = 10923

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  acagctcaagcttgctggca 183
            ||||||||||||||||||||
Sbjct: 7924 acagctcaagcttgctggca 7905
to top
>gb|AC021851.5| Homo sapiens BAC clone RP11-438L19 from 2, complete sequence
          Length = 202078

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    catgtagccatttttaaaacgaag 96
             ||||||||||||||||||| ||||
Sbjct: 35885 catgtagccatttttaaaaggaag 35908
to top
>gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, complete sequence
          Length = 201716

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    tgcatggcaaggctgccaaa 215
              ||||||||||||||||||||
Sbjct: 185980 tgcatggcaaggctgccaaa 185999


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,811,760
Number of Sequences: 3902068
Number of extensions: 2811760
Number of successful extensions: 38938
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38873
Number of HSP's gapped (non-prelim): 63
length of query: 308
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 286
effective length of database: 17,147,199,772
effective search space: 4904099134792
effective search space used: 4904099134792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top