>ref|XM_473245.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 702

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 297 tgctgcatgtacttgcaggacctctggtagctgacgaagcccatgaacc 345
           ||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 680 tgctgcatgtacttgcacgacctctggtagctcacgaaccccatgaacc 632

>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
             complete sequence
          Length = 141545

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                              
Query: 297   tgctgcatgtacttgcaggacctctggtagctgacgaagcccatgaacc 345
             ||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 92768 tgctgcatgtacttgcacgacctctggtagctcacgaaccccatgaacc 92816



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 130   ccgaaataagatcgagcaattccagccagggctgc 164
             ||||||||||||||||||| | |||||||||||||
Sbjct: 92597 ccgaaataagatcgagcaacttcagccagggctgc 92631



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 220   cttctcatcgtgccgacggaacaaac 245
             ||||||||||||||||||||||||||
Sbjct: 92669 cttctcatcgtgccgacggaacaaac 92694



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 90    caatccaaatcgtacgcggaag 111
             ||||||||||||||||||||||
Sbjct: 92572 caatccaaatcgtacgcggaag 92593

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                                 
Query: 297      tgctgcatgtacttgcaggacctctggtagctgacgaagcccatgaacc 345
                ||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 26316191 tgctgcatgtacttgcacgacctctggtagctcacgaaccccatgaacc 26316239



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 130      ccgaaataagatcgagcaattccagccagggctgc 164
                ||||||||||||||||||| | |||||||||||||
Sbjct: 26316020 ccgaaataagatcgagcaacttcagccagggctgc 26316054



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                          
Query: 220      cttctcatcgtgccgacggaacaaac 245
                ||||||||||||||||||||||||||
Sbjct: 26316092 cttctcatcgtgccgacggaacaaac 26316117



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 90       caatccaaatcgtacgcggaag 111
                ||||||||||||||||||||||
Sbjct: 26315995 caatccaaatcgtacgcggaag 26316016

>dbj|AK061581.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H09, full
           insert sequence
          Length = 1103

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 297 tgctgcatgtacttgcaggacctctggtagctgacgaagcccatgaacc 345
           ||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 803 tgctgcatgtacttgcacgacctctggtagctcacgaaccccatgaacc 755



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 130 ccgaaataagatcgagcaattccagccagggctgc 164
           ||||||||||||||||||| | |||||||||||||
Sbjct: 974 ccgaaataagatcgagcaacttcagccagggctgc 940



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 220 cttctcatcgtgccgacggaacaaac 245
           ||||||||||||||||||||||||||
Sbjct: 902 cttctcatcgtgccgacggaacaaac 877



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  caatccaaatcgtacgcggaag 111
           ||||||||||||||||||||||
Sbjct: 999 caatccaaatcgtacgcggaag 978

>ref|XM_466938.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 690

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                               
Query: 294 acctgctgcatgtacttgcaggacctctggtagctgacgaagcccatgaacc 345
           ||||||||||||||||||||| | ||||||||||| ||||| ||||||||||
Sbjct: 674 acctgctgcatgtacttgcagcatctctggtagctcacgaatcccatgaacc 623

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 294      acctgctgcatgtacttgcaggacctctggtagctgacgaagcccatgaacc 345
                ||||||||||||||||||||| | ||||||||||| ||||| ||||||||||
Sbjct: 25541975 acctgctgcatgtacttgcagcatctctggtagctcacgaatcccatgaacc 25542026



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 321      tggtagctgacgaagcccatgaacc 345
                |||||||||||||||||||||||||
Sbjct: 25546594 tggtagctgacgaagcccatgaacc 25546618



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 67       caatcgcttggaaaaacata 86
                ||||||||||||||||||||
Sbjct: 14218106 caatcgcttggaaaaacata 14218087

>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0014E22
          Length = 157627

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 294   acctgctgcatgtacttgcaggacctctggtagctgacgaagcccatgaacc 345
             ||||||||||||||||||||| | ||||||||||| ||||| ||||||||||
Sbjct: 12022 acctgctgcatgtacttgcagcatctctggtagctcacgaatcccatgaacc 12073



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 321   tggtagctgacgaagcccatgaacc 345
             |||||||||||||||||||||||||
Sbjct: 16641 tggtagctgacgaagcccatgaacc 16665

>dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1581_H09
          Length = 86699

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 294   acctgctgcatgtacttgcaggacctctggtagctgacgaagcccatgaacc 345
             ||||||||||||||||||||| | ||||||||||| ||||| ||||||||||
Sbjct: 33374 acctgctgcatgtacttgcagcatctctggtagctcacgaatcccatgaacc 33425



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 321   tggtagctgacgaagcccatgaacc 345
             |||||||||||||||||||||||||
Sbjct: 37993 tggtagctgacgaagcccatgaacc 38017

>ref|XM_466939.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1157

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 321 tggtagctgacgaagcccatgaacc 345
           |||||||||||||||||||||||||
Sbjct: 758 tggtagctgacgaagcccatgaacc 734

>dbj|AK069779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031H22, full
           insert sequence
          Length = 1157

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 321 tggtagctgacgaagcccatgaacc 345
           |||||||||||||||||||||||||
Sbjct: 758 tggtagctgacgaagcccatgaacc 734

>ref|XM_430332.1| PREDICTED: Gallus gallus hypothetical gene supported by BX930993;
           BX932025 (LOC425895), partial mRNA
          Length = 519

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 147 aattccagccagggctgctaccact 171
           ||||||||||||||||||| |||||
Sbjct: 368 aattccagccagggctgcttccact 344

>ref|XM_430318.1| PREDICTED: Gallus gallus hypothetical gene supported by BX934005
           (LOC425838), partial mRNA
          Length = 494

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 147 aattccagccagggctgctaccact 171
           ||||||||||||||||||| |||||
Sbjct: 368 aattccagccagggctgcttccact 344

>ref|XM_420071.1| PREDICTED: Gallus gallus similar to 60S ribosomal protein L19,
            mitochondrial precursor (L19mt) (MRP-L15) (LOC422066),
            mRNA
          Length = 2647

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 147  aattccagccagggctgctaccact 171
            ||||||||||||||||||| |||||
Sbjct: 2078 aattccagccagggctgcttccact 2054

>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 278    gtcggcgccggcgatgacctg 298
              |||||||||||||||||||||
Sbjct: 161405 gtcggcgccggcgatgacctg 161385

>emb|BX932217.2| Gallus gallus finished cDNA, clone ChEST319o14
          Length = 899

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 147 aattccagccagggctgctaccact 171
           ||||||||||||||||||| |||||
Sbjct: 750 aattccagccagggctgcttccact 726

>emb|BX930993.1| Gallus gallus finished cDNA, clone ChEST65h7
          Length = 911

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 147 aattccagccagggctgctaccact 171
           ||||||||||||||||||| |||||
Sbjct: 760 aattccagccagggctgcttccact 736

>emb|BX934005.1| Gallus gallus finished cDNA, clone ChEST59i18
          Length = 872

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 147 aattccagccagggctgctaccact 171
           ||||||||||||||||||| |||||
Sbjct: 723 aattccagccagggctgcttccact 699

>emb|BX932025.1| Gallus gallus finished cDNA, clone ChEST895o19
          Length = 949

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 147 aattccagccagggctgctaccact 171
           ||||||||||||||||||| |||||
Sbjct: 798 aattccagccagggctgcttccact 774

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    attgcaggtcggcgccggcg 290
              ||||||||||||||||||||
Sbjct: 320181 attgcaggtcggcgccggcg 320162

>emb|AJ720423.1| Gallus gallus mRNA for hypothetical protein, clone 17f16
          Length = 3493

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   ttcacatgcagcacggttaatttc 45
            ||||||||||||| ||||||||||
Sbjct: 1849 ttcacatgcagcagggttaatttc 1826

>ref|NM_001006381.1| Gallus gallus UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1),
            mRNA
          Length = 3493

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   ttcacatgcagcacggttaatttc 45
            ||||||||||||| ||||||||||
Sbjct: 1849 ttcacatgcagcagggttaatttc 1826

>gb|AE005676.1| Caulobacter crescentus CB15 section 2 of 359 of the complete genome
          Length = 10672

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  gtcggcgccggcgatgacct 297
            ||||||||||||||||||||
Sbjct: 3447 gtcggcgccggcgatgacct 3466

>gb|AE012226.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 134
            of 460 of the complete genome
          Length = 11922

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  caggtcggcgccggcgatga 294
            ||||||||||||||||||||
Sbjct: 3299 caggtcggcgccggcgatga 3318

>gb|AF426386.1| Xanthomonas campestris pv. campestris RNA polymerase sigmaE subunit
           (rpoE) gene, complete cds
          Length = 1432

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 caggtcggcgccggcgatga 294
           ||||||||||||||||||||
Sbjct: 10  caggtcggcgccggcgatga 29

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 275     caggtcggcgccggcgatga 294
               ||||||||||||||||||||
Sbjct: 3560245 caggtcggcgccggcgatga 3560226

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 271     attgcaggtcggcgccggcg 290
               ||||||||||||||||||||
Sbjct: 3726341 attgcaggtcggcgccggcg 3726360

>dbj|AP004856.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1570_H12
          Length = 129767

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     caatcgcttggaaaaacata 86
              ||||||||||||||||||||
Sbjct: 118126 caatcgcttggaaaaacata 118107

>dbj|AP004151.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_E02
          Length = 125860

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    caatcgcttggaaaaacata 86
             ||||||||||||||||||||
Sbjct: 23256 caatcgcttggaaaaacata 23237

>dbj|AK067803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118G17, full
            insert sequence
          Length = 3628

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   caatcgcttggaaaaacata 86
            ||||||||||||||||||||
Sbjct: 2571 caatcgcttggaaaaacata 2552


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,868,837
Number of Sequences: 3902068
Number of extensions: 2868837
Number of successful extensions: 54266
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53883
Number of HSP's gapped (non-prelim): 383
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)