Clone Name | rbart58f09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_474445.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1047 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 220 gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 279 |||||||||| |||||||| ||||||||||||||||| ||| || |||||||| | | Sbjct: 988 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 929 Query: 280 cgagcttggtcatggaggcagcaaactggccgaagaaccaccagtggttcccggcgaagc 339 | ||||| ||||||| | ||||||||| |||||||||||||||| |||||||||| Sbjct: 928 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 869 Query: 340 cgttgaccacccattcggtgcgccagtcggcggtgagc 377 | ||||||||||| ||||||||||||| |||||||| Sbjct: 868 cattgaccacccagctggtgcgccagtcgccggtgagc 831
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 220 gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 279 |||||||||| |||||||| ||||||||||||||||| ||| || |||||||| | | Sbjct: 85832 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 85773 Query: 280 cgagcttggtcatggaggcagcaaactggccgaagaaccaccagtggttcccggcgaagc 339 | ||||| ||||||| | ||||||||| |||||||||||||||| |||||||||| Sbjct: 85772 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 85713 Query: 340 cgttgaccacccattcggtgcgccagtcggcggtgagc 377 | ||||||||||| ||||||||||||| |||||||| Sbjct: 85712 cattgaccacccagctggtgcgccagtcgccggtgagc 85675
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 220 gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 279 |||||||||| |||||||| ||||||||||||||||| ||| || |||||||| | | Sbjct: 35227640 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 35227699 Query: 280 cgagcttggtcatggaggcagcaaactggccgaagaaccaccagtggttcccggcgaagc 339 | ||||| ||||||| | ||||||||| |||||||||||||||| |||||||||| Sbjct: 35227700 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 35227759 Query: 340 cgttgaccacccattcggtgcgccagtcggcggtgagc 377 | ||||||||||| ||||||||||||| |||||||| Sbjct: 35227760 cattgaccacccagctggtgcgccagtcgccggtgagc 35227797
>dbj|AK103558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132H20, full insert sequence Length = 1413 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 220 gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 279 |||||||||| |||||||| ||||||||||||||||| ||| || |||||||| | | Sbjct: 1091 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 1032 Query: 280 cgagcttggtcatggaggcagcaaactggccgaagaaccaccagtggttcccggcgaagc 339 | ||||| ||||||| | ||||||||| |||||||||||||||| |||||||||| Sbjct: 1031 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 972 Query: 340 cgttgaccacccattcggtgcgccagtcggcggtgagc 377 | ||||||||||| ||||||||||||| |||||||| Sbjct: 971 cattgaccacccagctggtgcgccagtcgccggtgagc 934
>dbj|AK101245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032B08, full insert sequence Length = 3800 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 220 gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 279 |||||||||| |||||||| ||||||||||||||||| ||| || |||||||| | | Sbjct: 3579 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 3520 Query: 280 cgagcttggtcatggaggcagcaaactggccgaagaaccaccagtggttcccggcgaagc 339 | ||||| ||||||| | ||||||||| |||||||||||||||| |||||||||| Sbjct: 3519 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 3460 Query: 340 cgttgaccacccattcggtgcgccagtcggcggtgagc 377 | ||||||||||| ||||||||||||| |||||||| Sbjct: 3459 cattgaccacccagctggtgcgccagtcgccggtgagc 3422
>tpe|BN000589.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx60 gene for class III peroxidase 60 precursor, exons 1-3 Length = 1221 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 220 gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 279 |||||||||| |||||||| ||||||||||||||||| ||| || |||||||| | | Sbjct: 1162 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 1103 Query: 280 cgagcttggtcatggaggcagcaaactggccgaagaaccaccagtggttcccggcgaagc 339 | ||||| ||||||| | ||||||||| |||||||||||||||| |||||||||| Sbjct: 1102 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 1043 Query: 340 cgttgaccacccattcggtgcgccagtcggcggtgagc 377 | ||||||||||| ||||||||||||| |||||||| Sbjct: 1042 cattgaccacccagctggtgcgccagtcgccggtgagc 1005
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 220 gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 279 |||||||||| |||||||| ||||||||||||||||| ||| || |||||||| | | Sbjct: 71215 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 71274 Query: 280 cgagcttggtcatggaggcagcaaactggccgaagaaccaccagtggttcccggcgaagc 339 | ||||| ||||||| | ||||||||| |||||||||||||||| |||||||||| Sbjct: 71275 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 71334 Query: 340 cgttgaccacccattcggtgcgccagtcggcggtgagc 377 | ||||||||||| ||||||||||||| |||||||| Sbjct: 71335 cattgaccacccagctggtgcgccagtcgccggtgagc 71372
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 220 gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 279 |||||||||| |||||||| ||||||||||||||||| ||| || |||||||| | | Sbjct: 23485 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 23544 Query: 280 cgagcttggtcatggaggcagcaaactggccgaagaaccaccagtggttcccggcgaagc 339 | ||||| ||||||| | ||||||||| |||||||||||||||| |||||||||| Sbjct: 23545 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 23604 Query: 340 cgttgaccacccattcggtgcgccagtcggcggtgagc 377 | ||||||||||| ||||||||||||| |||||||| Sbjct: 23605 cattgaccacccagctggtgcgccagtcgccggtgagc 23642
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 354 tcggtgcgccagtcggcggtgagct 378 ||||||||||||||||||||||||| Sbjct: 3987749 tcggtgcgccagtcggcggtgagct 3987773
>ref|XM_469777.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1023 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 atggaggcagcaaactggcc 310 |||||||||||||||||||| Sbjct: 651 atggaggcagcaaactggcc 632
>gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0032E21, complete sequence Length = 137580 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 atggaggcagcaaactggcc 310 |||||||||||||||||||| Sbjct: 112000 atggaggcagcaaactggcc 112019
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 atggaggcagcaaactggcc 310 |||||||||||||||||||| Sbjct: 30691785 atggaggcagcaaactggcc 30691766
>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete sequence Length = 157970 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 atggaggcagcaaactggcc 310 |||||||||||||||||||| Sbjct: 70607 atggaggcagcaaactggcc 70626
>gb|AC114822.7| Mus musculus BAC clone RP23-113A12 from 2, complete sequence Length = 209762 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 actattgtaaccaattaatataaa 75 |||||||||||||||| ||||||| Sbjct: 123547 actattgtaaccaatttatataaa 123570
>emb|AL512625.10| Human DNA sequence from clone RP11-262H14 on chromosome 9 Contains three novel genes, a novel pseudogene, two novel pseudogenes (LOC339742), a tumor suppressor deleted in oral cancer-related 1 (DOC-1R) pseudogene, a pseudogene similar to part of prostaglandin E receptor 4 (subtype EP4) (PTGER4), a pseudogene similar to part of myosin VA (heavy polypeptide 12, myoxin) (MYO5A), a pseudogene similar to part of G protein-coupled receptor 116 (GPR116), a pseudogene similar to part of fibroblast growth factor 7 (keratinocyte growth factor) (FGF7) and five CpG islands, complete sequence Length = 159539 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctattgtaaccaattaatat 72 |||||||||||||||||||| Sbjct: 11820 ctattgtaaccaattaatat 11839
>gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic sequence, complete sequence Length = 128294 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 atggaggcagcaaactggcc 310 |||||||||||||||||||| Sbjct: 486 atggaggcagcaaactggcc 467
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ttgtaaccaattaatataaa 75 |||||||||||||||||||| Sbjct: 272249 ttgtaaccaattaatataaa 272230
>emb|CR627148.1| Homo sapiens mRNA; cDNA DKFZp779F2127 (from clone DKFZp779F2127) Length = 2894 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctattgtaaccaattaatat 72 |||||||||||||||||||| Sbjct: 1109 ctattgtaaccaattaatat 1128
>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence Length = 157430 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 tggtcatggaggcagcaaactggc 309 |||||| ||||||||||||||||| Sbjct: 142122 tggtcagggaggcagcaaactggc 142145
>gb|AC137066.23| Pan troglodytes clone ptb-31f12, complete sequence Length = 153498 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 tggtcatggaggcagcaaactggc 309 |||||| ||||||||||||||||| Sbjct: 93872 tggtcagggaggcagcaaactggc 93849
>gb|AC096677.2| Homo sapiens chromosome 1 clone RP11-134G8, complete sequence Length = 223735 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 catttggtgttgtcattgct 44 |||||||||||||||||||| Sbjct: 174787 catttggtgttgtcattgct 174806
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 atggaggcagcaaactggcc 310 |||||||||||||||||||| Sbjct: 30783207 atggaggcagcaaactggcc 30783188
>gb|AC026461.11| Homo sapiens chromosome 16 clone RP11-249C24, complete sequence Length = 168392 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 6 aatatgttgatgatccttccatttggtg 33 ||||| || ||||||||||||||||||| Sbjct: 141922 aatatcttcatgatccttccatttggtg 141895
>gb|AC009155.3|AC009155 Homo sapiens chromosome 16 clone RP11-5A3, complete sequence Length = 143860 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 6 aatatgttgatgatccttccatttggtg 33 ||||| || ||||||||||||||||||| Sbjct: 83057 aatatcttcatgatccttccatttggtg 83084
>gb|AC007182.3|AC007182 Homo sapiens chromosome 14 clone BAC 507E23 map 14q24.3, complete sequence Length = 192389 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 tccttccatttggtgttgtcattg 42 |||||||||||| ||||||||||| Sbjct: 41137 tccttccatttgctgttgtcattg 41114
>dbj|AK099287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H11, full insert sequence Length = 1715 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 atggaggcagcaaactggcc 310 |||||||||||||||||||| Sbjct: 623 atggaggcagcaaactggcc 604
>emb|AJ251973.1|HSA251973 Homo sapiens partial steerin-1 gene Length = 200033 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 catttggtgttgtcattgct 44 |||||||||||||||||||| Sbjct: 13036 catttggtgttgtcattgct 13055
>dbj|AK069033.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004G24, full insert sequence Length = 877 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 atggaggcagcaaactggcc 310 |||||||||||||||||||| Sbjct: 626 atggaggcagcaaactggcc 607
>gb|AF016898.1|AF016898 Homo sapiens B-ATF gene, complete cds Length = 17004 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 tccttccatttggtgttgtcattg 42 |||||||||||| ||||||||||| Sbjct: 9131 tccttccatttgctgttgtcattg 9108
>gb|BC039680.1| Homo sapiens, clone IMAGE:5213378, mRNA Length = 1312 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctattgtaaccaattaatat 72 |||||||||||||||||||| Sbjct: 1082 ctattgtaaccaattaatat 1101
>emb|AL929043.7| Mouse DNA sequence from clone RP23-58H6 on chromosome 2, complete sequence Length = 164834 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 actattgtaaccaattaatataaa 75 |||||||||||||||| ||||||| Sbjct: 27555 actattgtaaccaatttatataaa 27578 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,828,803 Number of Sequences: 3902068 Number of extensions: 2828803 Number of successful extensions: 44088 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43965 Number of HSP's gapped (non-prelim): 123 length of query: 379 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 357 effective length of database: 17,147,199,772 effective search space: 6121550318604 effective search space used: 6121550318604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)