ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55684.1|BLYLDHB12 Hordeum vulgare L-lactate dehydrogenase mR... 422 e-115
2gb|M55685.1|BLYLDHA13 Hordeum vulgare L-lactate dehydrogenase mR... 111 1e-21
3ref|XM_463814.1| Oryza sativa (japonica cultivar-group), mRNA 78 2e-11
4ref|XM_463815.1| Oryza sativa (japonica cultivar-group), mRNA 78 2e-11
5ref|XM_506679.1| PREDICTED Oryza sativa (japonica cultivar-group... 78 2e-11
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
7dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
8dbj|AP004049.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
9dbj|AP006720.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
10dbj|AK106891.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
11dbj|AK105416.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
12dbj|AK103257.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
13dbj|D16685.1|RICLT36RGL Oryza sativa (japonica cultivar-group) g... 78 2e-11
14dbj|D13817.1|RICLDH Oryza sativa (japonica cultivar-group) mRNA ... 78 2e-11
15emb|Z11754.1|ZMLACDEHG Z.mays gene for lactate dehydrogenase 72 1e-09
16gb|AY109690.1| Zea mays CL2158_1 mRNA sequence 72 1e-09
17gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 46 0.065
18gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 46 0.065
19gb|AC133939.4| Mus musculus BAC clone RP23-402F1 from chromosome... 44 0.26
20gb|AC113945.26| Mus musculus chromosome 3, clone RP24-96D10, com... 42 1.0
21ref|XM_957964.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.0
22ref|XM_325549.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.0
23gb|AC164542.2| Mus musculus chromosome 3, clone RP23-391J12, com... 42 1.0
24gb|AC100752.10| Mus musculus chromosome 3, clone RP23-2A4, compl... 42 1.0
25gb|AC131026.11| Medicago truncatula clone mth2-6e18, complete se... 42 1.0
26emb|AL359178.10| Human DNA sequence from clone RP11-481K24 on ch... 42 1.0
27emb|CR524821.5| Zebrafish DNA sequence from clone CH211-192F15 i... 42 1.0
28emb|BX248508.10| Zebrafish DNA sequence from clone CH211-238F11 ... 42 1.0
29emb|BX004973.10| Mouse DNA sequence from clone RP24-260G16 on ch... 42 1.0
30gb|AC122462.5| Mus musculus BAC clone RP24-294G11 from 3, comple... 42 1.0
31gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 4.0
32gb|BC052316.1| Mus musculus heparan sulfate 6-O-sulfotransferase... 40 4.0
33gb|AC150204.30| Medicago truncatula clone mth2-69i3, complete se... 40 4.0
34ref|XM_985333.1| PREDICTED: Mus musculus heparan sulfate 6-O-sul... 40 4.0
35emb|CR721084.2|CNS0GJC2 Tetraodon nigroviridis full-length cDNA 40 4.0
36emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chr... 40 4.0
37emb|AL672310.3| Human DNA sequence from clone RP11-226I21 on chr... 40 4.0
38emb|AL353654.29| Human DNA sequence from clone RP1-24O22 on chro... 40 4.0
39gb|AC129907.3| Homo sapiens chromosome 15, clone CTD-2280M1, com... 40 4.0
40ref|NM_015818.1| Mus musculus heparan sulfate 6-O-sulfotransfera... 40 4.0
41dbj|AK144809.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 40 4.0
42dbj|AK157556.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 4.0
43dbj|AK165385.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 40 4.0
44dbj|AK165161.1| Mus musculus 8 cells embryo 8 cells cDNA, RIKEN ... 40 4.0
45dbj|AK167151.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 40 4.0
46dbj|AK166962.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 40 4.0
47gb|AC140725.3| Homo sapiens chromosome 15, clone, complete sequence 40 4.0
48gb|AC134845.5| Mus musculus BAC clone RP24-424K5 from chromosome... 40 4.0
49gb|AC092192.1|AC092192 Homo sapiens chromosome 19 clone LLNLF-12... 40 4.0
50gb|AC138034.2| Homo sapiens chromosome 5 clone XXcos-B22C80, com... 40 4.0
51dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
52gb|AC069287.7| Homo sapiens BAC clone RP11-304M2 from 11, comple... 40 4.0
53gb|AC139237.2| Homo sapiens chromosome 5 clone XXcos-B22C68, com... 40 4.0
54dbj|AP006435.1| Sus scrofa CC chemokine receptor genes (CCR3, C... 40 4.0
55gb|AC116960.2| Dictyostelium discoideum chromosome 2 map complem... 40 4.0
56gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, com... 40 4.0
57gb|AC107977.13| Homo sapiens chromosome 15, clone CTD-2611K5, co... 40 4.0
58gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.0
59gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, comp... 40 4.0
60gb|AC110274.5| Homo sapiens chromosome 8, clone RP11-161B15, com... 40 4.0
61gb|AC087762.20| Homo sapiens chromosome 15, clone RP11-76I7, com... 40 4.0
62gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, compl... 40 4.0
63gb|AC016626.4|AC016626 Homo sapiens chromosome 19 clone LLNLR-22... 40 4.0
64dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
65dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
66dbj|AB078333.1| Gallus gallus sTnT gene for slow skeletal muscle... 40 4.0
67emb|BX649379.10| Human DNA sequence from clone RP5-1040D10 on ch... 40 4.0
68emb|AL954377.12| Mouse DNA sequence from clone RP24-235M10 on ch... 40 4.0
69dbj|AB161687.1| Delftia acidovorans clpP gene for putative ClpP ... 40 4.0
70gb|AC004842.2|AC004842 Homo sapiens PAC clone RP4-609N19 from 7p... 40 4.0
71gb|AC004908.1|AC004908 Homo sapiens PAC clone RP5-855D21, comple... 40 4.0
72dbj|AK063252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.0
73gb|U40942.2| Caenorhabditis elegans cosmid K02E10, complete sequ... 40 4.0
74emb|AL929347.8| Human DNA sequence from clone RP3-433O3 on chrom... 40 4.0
75gb|AC133102.4| Mus musculus BAC clone RP23-173H19 from 1, comple... 40 4.0
76dbj|AB024566.1| Mus musculus mRNA for heparan sulfate 6-sulfotra... 40 4.0 
>gb|M55684.1|BLYLDHB12 Hordeum vulgare L-lactate dehydrogenase mRNA, complete cds
          Length = 1166

 Score =  422 bits (213), Expect = e-115
 Identities = 219/221 (99%)
 Strand = Plus / Minus

                                                                        
Query: 85   gcacaaaatctcattttatttcaccaaactaataccagtactccagctctaagaaatcag 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 gcacaaaatctcattttatttcaccaaactaataccagtactccagctctaagaaatcag 1107

                                                                        
Query: 145  tccaaaattacacaagcatttgtgtggcagcgttatattaatagcacaacatatatagca 204
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1106 tccaaaattacacaagcatttgagaggcagcgttatattaatagcacaacatatatagca 1047

                                                                        
Query: 205  gtagagatcctcagaggccaaggagctggcagttctcccagagcgtcttggcggaccggc 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 gtagagatcctcagaggccaaggagctggcagttctcccagagcgtcttggcggaccggc 987

                                                     
Query: 265  ggagctgcgcggcctcggcctcggtgagatccatctcagcg 305
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 986  ggagctgcgcggcctcggcctcggtgagatccatctcagcg 946
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>gb|M55685.1|BLYLDHA13 Hordeum vulgare L-lactate dehydrogenase mRNA, complete cds
          Length = 1298

 Score =  111 bits (56), Expect = 1e-21
 Identities = 80/88 (90%)
 Strand = Plus / Minus

                                                                        
Query: 214  ctcagaggccaaggagctggcagttctcccagagcgtcttggcggaccggcggagctgcg 273
            |||||||| | || |||||||||||||||||||||||||||||||| || |||||||| |
Sbjct: 1125 ctcagaggtcgagaagctggcagttctcccagagcgtcttggcggagcgccggagctggg 1066

                                        
Query: 274  cggcctcggcctcggtgagatccatctc 301
            ||||||| ||||||||||| ||||||||
Sbjct: 1065 cggcctcagcctcggtgaggtccatctc 1038
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>ref|XM_463814.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1602

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                       
Query: 228 agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
           |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 31  agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 89

                          
Query: 287 ggtgagatccatctc 301
           |||||| ||||||||
Sbjct: 90  ggtgagctccatctc 104
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>ref|XM_463815.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1414

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 228  agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
            |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 1159 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 1101

                           
Query: 287  ggtgagatccatctc 301
            |||||| ||||||||
Sbjct: 1100 ggtgagctccatctc 1086
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>ref|XM_506679.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1212_C06.24 mRNA
          Length = 1509

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 228  agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
            |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 1334 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 1276

                           
Query: 287  ggtgagatccatctc 301
            |||||| ||||||||
Sbjct: 1275 ggtgagctccatctc 1261
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                          
Query: 228    agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
              |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 298912 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 298854

                             
Query: 287    ggtgagatccatctc 301
              |||||| ||||||||
Sbjct: 298853 ggtgagctccatctc 298839
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>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1359_D06
          Length = 146805

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                         
Query: 228   agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
             |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 27696 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 27638

                            
Query: 287   ggtgagatccatctc 301
             |||||| ||||||||
Sbjct: 27637 ggtgagctccatctc 27623
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>dbj|AP004049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1212_C06
          Length = 110989

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                          
Query: 228    agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
              |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 108887 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 108829

                             
Query: 287    ggtgagatccatctc 301
              |||||| ||||||||
Sbjct: 108828 ggtgagctccatctc 108814
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>dbj|AP006720.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              clone:OJA1212_C06
          Length = 113554

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                          
Query: 228    agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
              |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 111452 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 111394

                             
Query: 287    ggtgagatccatctc 301
              |||||| ||||||||
Sbjct: 111393 ggtgagctccatctc 111379
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>dbj|AK106891.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G06, full
           insert sequence
          Length = 1601

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                       
Query: 228 agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
           |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 31  agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 89

                          
Query: 287 ggtgagatccatctc 301
           |||||| ||||||||
Sbjct: 90  ggtgagctccatctc 104
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>dbj|AK105416.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A01, full
            insert sequence
          Length = 1414

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 228  agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
            |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 1159 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 1101

                           
Query: 287  ggtgagatccatctc 301
            |||||| ||||||||
Sbjct: 1100 ggtgagctccatctc 1086
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>dbj|AK103257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124A12, full
            insert sequence
          Length = 1510

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 228  agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
            |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 1334 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 1276

                           
Query: 287  ggtgagatccatctc 301
            |||||| ||||||||
Sbjct: 1275 ggtgagctccatctc 1261
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>dbj|D16685.1|RICLT36RGL Oryza sativa (japonica cultivar-group) gene for lactate
            dehydrogenase, complete cds
          Length = 5857

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 228  agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
            |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 5460 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 5402

                           
Query: 287  ggtgagatccatctc 301
            |||||| ||||||||
Sbjct: 5401 ggtgagctccatctc 5387
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>dbj|D13817.1|RICLDH Oryza sativa (japonica cultivar-group) mRNA for lactate
            dehydrogenase, complete cds
          Length = 1412

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 228  agctggcagttctcccagagcgtcttggcggaccggcgga-gctgcgcggcctcggcctc 286
            |||||||||||||||||||||||||||||||| ||||||| || ||| ||||||  ||||
Sbjct: 1159 agctggcagttctcccagagcgtcttggcggagcggcggaggcggcg-ggcctcctcctc 1101

                           
Query: 287  ggtgagatccatctc 301
            |||||| ||||||||
Sbjct: 1100 ggtgagctccatctc 1086
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>emb|Z11754.1|ZMLACDEHG Z.mays gene for lactate dehydrogenase
          Length = 2999

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 210  gatcctcagaggccaaggagctggcagttctcccagagcgtcttggcggaccggcg 265
            |||| ||||||||| ||||||||||||||||||||||  ||||||||||| |||||
Sbjct: 2530 gatcatcagaggccgaggagctggcagttctcccagatggtcttggcggagcggcg 2475
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>gb|AY109690.1| Zea mays CL2158_1 mRNA sequence
          Length = 1496

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 210  gatcctcagaggccaaggagctggcagttctcccagagcgtcttggcggaccggcg 265
            |||| ||||||||| ||||||||||||||||||||||  ||||||||||| |||||
Sbjct: 1140 gatcatcagaggccgaggagctggcagttctcccagatggtcttggcggagcggcg 1085
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 273     gcggcctcggcctcggtgagatc 295
               |||||||||||||||||||||||
Sbjct: 1120724 gcggcctcggcctcggtgagatc 1120746
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 261     cggcggagctgcgcggcctcggc 283
               |||||||||||||||||||||||
Sbjct: 2350888 cggcggagctgcgcggcctcggc 2350910
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>gb|AC133939.4| Mus musculus BAC clone RP23-402F1 from chromosome 5, complete sequence
          Length = 193121

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 90    aaatctcattttatttcaccaa 111
             ||||||||||||||||||||||
Sbjct: 46350 aaatctcattttatttcaccaa 46329
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>gb|AC113945.26| Mus musculus chromosome 3, clone RP24-96D10, complete sequence
          Length = 144239

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   ttatattaatagcacaacata 197
             |||||||||||||||||||||
Sbjct: 13065 ttatattaatagcacaacata 13085
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>ref|XM_957964.1| Neurospora crassa OR74A hypothetical protein (NCU05695.1) partial
            mRNA
          Length = 4098

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 274  cggcctcggcctcggtgagatccat 298
            ||||||||||||||||||| |||||
Sbjct: 3244 cggcctcggcctcggtgagctccat 3220
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>ref|XM_325549.1| Neurospora crassa OR74A hypothetical protein (NCU05695.1) partial
            mRNA
          Length = 4098

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 274  cggcctcggcctcggtgagatccat 298
            ||||||||||||||||||| |||||
Sbjct: 3244 cggcctcggcctcggtgagctccat 3220
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>gb|AC164542.2| Mus musculus chromosome 3, clone RP23-391J12, complete sequence
          Length = 202319

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 203   cagtagagatcctcagaggccaagg 227
             |||||||||||||| ||||||||||
Sbjct: 34752 cagtagagatcctctgaggccaagg 34776
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>gb|AC100752.10| Mus musculus chromosome 3, clone RP23-2A4, complete sequence
          Length = 208757

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 203    cagtagagatcctcagaggccaagg 227
              |||||||||||||| ||||||||||
Sbjct: 177934 cagtagagatcctctgaggccaagg 177958
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>gb|AC131026.11| Medicago truncatula clone mth2-6e18, complete sequence
          Length = 114815

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    tgcacaaaatctcattttatt 104
             |||||||||||||||||||||
Sbjct: 42138 tgcacaaaatctcattttatt 42158
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>emb|AL359178.10| Human DNA sequence from clone RP11-481K24 on chromosome 13, complete
             sequence
          Length = 86117

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   tatattaatagcacaacatat 198
             |||||||||||||||||||||
Sbjct: 43353 tatattaatagcacaacatat 43373
to top
>emb|CR524821.5| Zebrafish DNA sequence from clone CH211-192F15 in linkage group 16,
             complete sequence
          Length = 152728

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 79    atggttgcacaaaatctcattttat 103
             |||| ||||||||||||||||||||
Sbjct: 50980 atggatgcacaaaatctcattttat 51004
to top
>emb|BX248508.10| Zebrafish DNA sequence from clone CH211-238F11 in linkage group 1,
             complete sequence
          Length = 170756

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 193   acatatatagcagtagagatc 213
             |||||||||||||||||||||
Sbjct: 20542 acatatatagcagtagagatc 20522
to top
>emb|BX004973.10| Mouse DNA sequence from clone RP24-260G16 on chromosome 2, complete
             sequence
          Length = 114815

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    acaaaatctcattttatttca 107
             |||||||||||||||||||||
Sbjct: 11548 acaaaatctcattttatttca 11568
to top
>gb|AC122462.5| Mus musculus BAC clone RP24-294G11 from 3, complete sequence
          Length = 160501

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    ttatattaatagcacaacata 197
              |||||||||||||||||||||
Sbjct: 129167 ttatattaatagcacaacata 129187
to top
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 268     gctgcgcggcctcggcctcg 287
               ||||||||||||||||||||
Sbjct: 2080334 gctgcgcggcctcggcctcg 2080353
to top
>gb|BC052316.1| Mus musculus heparan sulfate 6-O-sulfotransferase 1, mRNA (cDNA clone
            MGC:54588 IMAGE:6391204), complete cds
          Length = 3780

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctcagaggccaaggagct 231
            ||||||||||||||||||||
Sbjct: 1825 tcctcagaggccaaggagct 1806
to top
>gb|AC150204.30| Medicago truncatula clone mth2-69i3, complete sequence
          Length = 115027

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    caaatggttgcacaaaatct 95
             ||||||||||||||||||||
Sbjct: 80181 caaatggttgcacaaaatct 80162
to top
>ref|XM_985333.1| PREDICTED: Mus musculus heparan sulfate 6-O-sulfotransferase 1
            (Hs6st1), mRNA
          Length = 3874

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctcagaggccaaggagct 231
            ||||||||||||||||||||
Sbjct: 1120 tcctcagaggccaaggagct 1101
to top
>emb|CR721084.2|CNS0GJC2 Tetraodon nigroviridis full-length cDNA
          Length = 1606

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 7  aaagctgttgggtatgaatt 26
          ||||||||||||||||||||
Sbjct: 42 aaagctgttgggtatgaatt 61
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>emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chromosome 1 Contains five
             novel genes, two novel pseudogenes and the gene for a
             novel protein similar to the olfactory receptor family,
             complete sequence
          Length = 153649

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 61421 cattttatttcaccaaacta 61402
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>emb|AL672310.3| Human DNA sequence from clone RP11-226I21 on chromosome 6 Contains
            putative novel gene, complete sequence
          Length = 53890

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   cattttatttcaccaaacta 115
            ||||||||||||||||||||
Sbjct: 4144 cattttatttcaccaaacta 4125
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>emb|AL353654.29| Human DNA sequence from clone RP1-24O22 on chromosome 6 Contains an
             olfactory receptor pseudogene, a gene for a novel protein
             similar to septin and a novel pseudogene, complete
             sequence
          Length = 86701

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 35376 cattttatttcaccaaacta 35395
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>gb|AC129907.3| Homo sapiens chromosome 15, clone CTD-2280M1, complete sequence
          Length = 127340

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 54643 cattttatttcaccaaacta 54624
to top
>ref|NM_015818.1| Mus musculus heparan sulfate 6-O-sulfotransferase 1 (Hs6st1), mRNA
          Length = 3732

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctcagaggccaaggagct 231
            ||||||||||||||||||||
Sbjct: 1815 tcctcagaggccaaggagct 1796
to top
>dbj|AK144809.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
            library, clone:G730037H10 product:heparan sulfate
            6-O-sulfotransferase 1, full insert sequence
          Length = 3497

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctcagaggccaaggagct 231
            ||||||||||||||||||||
Sbjct: 1745 tcctcagaggccaaggagct 1726
to top
>dbj|AK157556.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830223D21 product:heparan sulfate
            6-O-sulfotransferase 1, full insert sequence
          Length = 3449

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctcagaggccaaggagct 231
            ||||||||||||||||||||
Sbjct: 1689 tcctcagaggccaaggagct 1670
to top
>dbj|AK165385.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
            library, clone:F430211I23 product:heparan sulfate
            6-O-sulfotransferase 1, full insert sequence
          Length = 2878

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctcagaggccaaggagct 231
            ||||||||||||||||||||
Sbjct: 1228 tcctcagaggccaaggagct 1209
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>dbj|AK165161.1| Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched
            library, clone:E860007H01 product:heparan sulfate
            6-O-sulfotransferase 1, full insert sequence
          Length = 3294

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctcagaggccaaggagct 231
            ||||||||||||||||||||
Sbjct: 2865 tcctcagaggccaaggagct 2846
to top
>dbj|AK167151.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
            library, clone:I1C0035G15 product:heparan sulfate
            6-O-sulfotransferase 1, full insert sequence
          Length = 3147

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctcagaggccaaggagct 231
            ||||||||||||||||||||
Sbjct: 1254 tcctcagaggccaaggagct 1235
to top
>dbj|AK166962.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
           library, clone:I1C0025K13 product:heparan sulfate
           6-O-sulfotransferase 1, full insert sequence
          Length = 3689

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 tcctcagaggccaaggagct 231
           ||||||||||||||||||||
Sbjct: 930 tcctcagaggccaaggagct 911
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>gb|AC140725.3| Homo sapiens chromosome 15, clone, complete sequence
          Length = 181240

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 93760 cattttatttcaccaaacta 93779
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>gb|AC134845.5| Mus musculus BAC clone RP24-424K5 from chromosome 1, complete sequence
          Length = 194449

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    tcctcagaggccaaggagct 231
              ||||||||||||||||||||
Sbjct: 175665 tcctcagaggccaaggagct 175646
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>gb|AC092192.1|AC092192 Homo sapiens chromosome 19 clone LLNLF-127D1, complete sequence
          Length = 39041

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   cattttatttcaccaaacta 115
            ||||||||||||||||||||
Sbjct: 6258 cattttatttcaccaaacta 6277
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>gb|AC138034.2| Homo sapiens chromosome 5 clone XXcos-B22C80, complete sequence
          Length = 36893

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   cattttatttcaccaaacta 115
            ||||||||||||||||||||
Sbjct: 9063 cattttatttcaccaaacta 9044
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 263      gcggagctgcgcggcctcggcctc 286
                ||||||| ||||||||||||||||
Sbjct: 27765723 gcggagcagcgcggcctcggcctc 27765700
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>gb|AC069287.7| Homo sapiens BAC clone RP11-304M2 from 11, complete sequence
          Length = 199487

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     cattttatttcaccaaacta 115
              ||||||||||||||||||||
Sbjct: 183380 cattttatttcaccaaacta 183361
to top
>gb|AC139237.2| Homo sapiens chromosome 5 clone XXcos-B22C68, complete sequence
          Length = 28607

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 22702 cattttatttcaccaaacta 22683
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>dbj|AP006435.1| Sus scrofa  CC chemokine receptor genes (CCR3, CCR2, CCR5, CCRL2, LTF),
             complete and partial cds, clone: 0479G08
          Length = 144233

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    ttttatatccttgttctaca 44
             ||||||||||||||||||||
Sbjct: 43768 ttttatatccttgttctaca 43787
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>gb|AC116960.2| Dictyostelium discoideum chromosome 2 map complement(1004496-821614)
              strain AX4, complete sequence
          Length = 182870

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     cacaaaatctcattttattt 105
              ||||||||||||||||||||
Sbjct: 160148 cacaaaatctcattttattt 160129
to top
>gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, complete sequence
          Length = 150642

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 62198 cattttatttcaccaaacta 62217
to top
>gb|AC107977.13| Homo sapiens chromosome 15, clone CTD-2611K5, complete sequence
          Length = 152619

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   cattttatttcaccaaacta 115
            ||||||||||||||||||||
Sbjct: 6434 cattttatttcaccaaacta 6453
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 264    cggagctgcgcggcctcggcctcg 287
              |||||| |||||||||||||||||
Sbjct: 707714 cggagcagcgcggcctcggcctcg 707691
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>gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, complete sequence
          Length = 120139

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 61422 cattttatttcaccaaacta 61403
to top
>gb|AC110274.5| Homo sapiens chromosome 8, clone RP11-161B15, complete sequence
          Length = 152802

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     cattttatttcaccaaacta 115
              ||||||||||||||||||||
Sbjct: 128688 cattttatttcaccaaacta 128669
to top
>gb|AC087762.20| Homo sapiens chromosome 15, clone RP11-76I7, complete sequence
          Length = 104836

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   caaaattacacaagcatttg 166
             ||||||||||||||||||||
Sbjct: 35805 caaaattacacaagcatttg 35786
to top
>gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, complete sequence
          Length = 121664

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 89185 cattttatttcaccaaacta 89204
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>gb|AC016626.4|AC016626 Homo sapiens chromosome 19 clone LLNLR-226C11, complete sequence
          Length = 36411

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 20951 cattttatttcaccaaacta 20970
to top
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1153E06
          Length = 174588

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 263    gcggagctgcgcggcctcggcctc 286
              ||||||| ||||||||||||||||
Sbjct: 114978 gcggagcagcgcggcctcggcctc 114955
to top
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710B08
          Length = 186991

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 263   gcggagctgcgcggcctcggcctc 286
             ||||||| ||||||||||||||||
Sbjct: 68232 gcggagcagcgcggcctcggcctc 68209
to top
>dbj|AB078333.1| Gallus gallus sTnT gene for slow skeletal muscle troponin T, complete
            cds
          Length = 3690

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  gcggcctcggcctcggtgag 292
            ||||||||||||||||||||
Sbjct: 1882 gcggcctcggcctcggtgag 1901
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>emb|BX649379.10| Human DNA sequence from clone RP5-1040D10 on chromosome 1, complete
            sequence
          Length = 93321

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   cattttatttcaccaaacta 115
            ||||||||||||||||||||
Sbjct: 2148 cattttatttcaccaaacta 2129
to top
>emb|AL954377.12| Mouse DNA sequence from clone RP24-235M10 on chromosome 4, complete
            sequence
          Length = 59149

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 87   acaaaatctcattttatttcacca 110
            ||||||||||||||| ||||||||
Sbjct: 4288 acaaaatctcattttctttcacca 4311
to top
>dbj|AB161687.1| Delftia acidovorans clpP gene for putative ClpP protease, complete
            cds
          Length = 1881

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  cgcggcctcggcctcggtga 291
            ||||||||||||||||||||
Sbjct: 1102 cgcggcctcggcctcggtga 1083
to top
>gb|AC004842.2|AC004842 Homo sapiens PAC clone RP4-609N19 from 7p22, complete sequence
          Length = 120000

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     cattttatttcaccaaacta 115
              ||||||||||||||||||||
Sbjct: 107220 cattttatttcaccaaacta 107201
to top
>gb|AC004908.1|AC004908 Homo sapiens PAC clone RP5-855D21, complete sequence
          Length = 138251

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 32248 cattttatttcaccaaacta 32267
to top
>dbj|AK063252.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-H05, full
           insert sequence
          Length = 715

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gcggagctgcgcggcctcggcctc 286
           ||||||| ||||||||||||||||
Sbjct: 332 gcggagcagcgcggcctcggcctc 355
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>gb|U40942.2| Caenorhabditis elegans cosmid K02E10, complete sequence
          Length = 38434

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    tcattttatttcaccaaact 114
             ||||||||||||||||||||
Sbjct: 11482 tcattttatttcaccaaact 11501
to top
>emb|AL929347.8| Human DNA sequence from clone RP3-433O3 on chromosome 22, complete
             sequence
          Length = 128374

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cattttatttcaccaaacta 115
             ||||||||||||||||||||
Sbjct: 21241 cattttatttcaccaaacta 21260
to top
>gb|AC133102.4| Mus musculus BAC clone RP23-173H19 from 1, complete sequence
          Length = 199590

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    tcctcagaggccaaggagct 231
              ||||||||||||||||||||
Sbjct: 167516 tcctcagaggccaaggagct 167535
to top
>dbj|AB024566.1| Mus musculus mRNA for heparan sulfate 6-sulfotransferase 1, complete
            cds
          Length = 3732

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctcagaggccaaggagct 231
            ||||||||||||||||||||
Sbjct: 1815 tcctcagaggccaaggagct 1796


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,436,631
Number of Sequences: 3902068
Number of extensions: 3436631
Number of successful extensions: 70130
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69702
Number of HSP's gapped (non-prelim): 428
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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