Clone Name | rbart58f06 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 318 ggggatcgatccaaggctggctggctgg 345 ||||||||||||| |||||||||||||| Sbjct: 30194713 ggggatcgatccatggctggctggctgg 30194686
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 318 ggggatcgatccaaggctggctggctgg 345 ||||||||||||| |||||||||||||| Sbjct: 29182 ggggatcgatccatggctggctggctgg 29209
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 318 ggggatcgatccaaggctggctggctgg 345 ||||||||||||| |||||||||||||| Sbjct: 30286135 ggggatcgatccatggctggctggctgg 30286108
>emb|AL449403.11| Human DNA sequence from clone RP11-569G13 on chromosome 9 Contains a eukaryotic translation initiation factor 4B (EIF4B) pseudogene and part of a novel gene, complete sequence Length = 173916 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 ccaaggctggctggctggctg 348 ||||||||||||||||||||| Sbjct: 164891 ccaaggctggctggctggctg 164871
>dbj|AP006654.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT31E21, TM0340, complete sequence Length = 120480 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 gttcatcattagttaatgatg 122 ||||||||||||||||||||| Sbjct: 49900 gttcatcattagttaatgatg 49880
>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05, complete sequence Length = 143400 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gttgcatgagttcaccggag 145 |||||||||||||||||||| Sbjct: 47411 gttgcatgagttcaccggag 47430
>gb|AC121146.8| Mus musculus chromosome 3, clone RP24-297G3, complete sequence Length = 157105 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 cacttacttatgtatataat 275 |||||||||||||||||||| Sbjct: 91921 cacttacttatgtatataat 91940
>ref|XM_981931.1| PREDICTED: Mus musculus G protein-coupled receptor 165, transcript variant 2 (Gpr165), mRNA Length = 1700 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 71 tccaaggctggctggctggc 52
>ref|XM_981895.1| PREDICTED: Mus musculus G protein-coupled receptor 165, transcript variant 1 (Gpr165), mRNA Length = 1408 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 98 tccaaggctggctggctggc 79
>ref|XM_981971.1| PREDICTED: Mus musculus G protein-coupled receptor 165, transcript variant 3 (Gpr165), mRNA Length = 3799 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 71 tccaaggctggctggctggc 52
>ref|XM_895668.2| PREDICTED: Mus musculus G protein-coupled receptor 165, transcript variant 2 (Gpr165), mRNA Length = 1700 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 71 tccaaggctggctggctggc 52
>ref|XM_895689.2| PREDICTED: Mus musculus G protein-coupled receptor 165, transcript variant 3 (Gpr165), mRNA Length = 1408 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 98 tccaaggctggctggctggc 79
>ref|XM_895702.2| PREDICTED: Mus musculus G protein-coupled receptor 165, transcript variant 4 (Gpr165), mRNA Length = 3799 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 71 tccaaggctggctggctggc 52
>ref|XM_919039.2| PREDICTED: Mus musculus G protein-coupled receptor 165, transcript variant 6 (Gpr165), mRNA Length = 1700 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 71 tccaaggctggctggctggc 52
>ref|XM_919056.2| PREDICTED: Mus musculus G protein-coupled receptor 165, transcript variant 7 (Gpr165), mRNA Length = 1408 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 98 tccaaggctggctggctggc 79
>ref|XM_982599.1| PREDICTED: Mus musculus G protein-coupled receptor 165, transcript variant 8 (Gpr165), mRNA Length = 3694 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 71 tccaaggctggctggctggc 52
>ref|XM_732823.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000602.03.0) partial mRNA Length = 561 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aaatcaaattgtatatatgt 25 |||||||||||||||||||| Sbjct: 217 aaatcaaattgtatatatgt 236
>emb|AL353613.10| Human DNA sequence from clone RP11-395D3 on chromosome 9 Contains the 5' end of a novel gene, complete sequence Length = 97898 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccaaggctggctggctggct 347 |||||||||||||||||||| Sbjct: 46138 ccaaggctggctggctggct 46157
>emb|AL354872.9| Human DNA sequence from clone RP11-42O15 on chromosome 1 Contains the CTH gene for cystathionase (cystathionine gamma-lyase) and a cysteine and histidine-rich domain (CHORD)-containing zinc binding protein 1 (CHORDC1) pseudogene, complete sequence Length = 151777 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 agtactaactaatcttatct 93 |||||||||||||||||||| Sbjct: 121011 agtactaactaatcttatct 120992
>gb|AY342401.1| Homo sapiens vitamin D (1,25-dihydroxyvitamin D3) receptor (VDR) gene, complete cds Length = 67076 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggctggctggctggctgcga 351 |||||||||||||||||||| Sbjct: 29674 ggctggctggctggctgcga 29655
>gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164941 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aaatcaaattgtatatatgt 25 |||||||||||||||||||| Sbjct: 142874 aaatcaaattgtatatatgt 142893
>emb|BX470157.6| Zebrafish DNA sequence from clone CH211-119P14 in linkage group 14, complete sequence Length = 201228 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aaattgtatatatgtttgta 30 |||||||||||||||||||| Sbjct: 59492 aaattgtatatatgtttgta 59473
>emb|BX530085.3| Zebrafish DNA sequence from clone DKEY-18A21 in linkage group 14, complete sequence Length = 227326 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aaattgtatatatgtttgta 30 |||||||||||||||||||| Sbjct: 49407 aaattgtatatatgtttgta 49388
>gb|AC023722.4| Drosophila melanogaster X BAC RP98-48O24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 191590 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 caaggctggctggctggctg 348 |||||||||||||||||||| Sbjct: 89987 caaggctggctggctggctg 89968
>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170356 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aaatcaaattgtatatatgt 25 |||||||||||||||||||| Sbjct: 68574 aaatcaaattgtatatatgt 68593
>dbj|AK045935.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230324O03 product:hypothetical Rhodopsin-like GPCR superfamily/G-protein coupled receptors family 1 profile containing protein, full insert sequence Length = 1656 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 27 tccaaggctggctggctggc 8
>dbj|AK042723.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730018P10 product:hypothetical Rhodopsin-like GPCR superfamily/G-protein coupled receptors family 1 profile containing protein, full insert sequence Length = 2558 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 48 tccaaggctggctggctggc 29
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gttgcatgagttcaccggag 145 |||||||||||||||||||| Sbjct: 16096241 gttgcatgagttcaccggag 16096260
>gb|AC004466.1| Homo sapiens 12 PAC RPCI5-1057I20 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 122186 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggctggctggctggctgcga 351 |||||||||||||||||||| Sbjct: 13873 ggctggctggctggctgcga 13854
>dbj|AP007253.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0004O05 Length = 140513 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gttgcatgagttcaccggag 145 |||||||||||||||||||| Sbjct: 126158 gttgcatgagttcaccggag 126139
>emb|AL805947.8| Zebrafish DNA sequence from clone CH211-212P13, complete sequence Length = 226542 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaatcaaattgtatatatgt 25 |||||||||||||||||||| Sbjct: 170618 aaatcaaattgtatatatgt 170599
>emb|BX248242.5| Zebrafish DNA sequence from clone BUSM1-205D10 in linkage group 20, complete sequence Length = 104779 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 caaattgtatatatgtttgt 29 |||||||||||||||||||| Sbjct: 31414 caaattgtatatatgtttgt 31433
>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete sequence Length = 244140 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aaatcaaattgtatatatgt 25 |||||||||||||||||||| Sbjct: 79859 aaatcaaattgtatatatgt 79878
>gb|AE003438.3| Drosophila melanogaster chromosome X, section 22 of 74 of the complete sequence Length = 299943 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 caaggctggctggctggctg 348 |||||||||||||||||||| Sbjct: 235978 caaggctggctggctggctg 235959
>emb|AL672095.6| Mouse DNA sequence from clone RP23-387N22 on chromosome X, complete sequence Length = 165970 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccaaggctggctggctggc 346 |||||||||||||||||||| Sbjct: 113744 tccaaggctggctggctggc 113725
>dbj|AP005137.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-78A19, complete sequences Length = 80992 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 caaggctggctggctggctg 348 |||||||||||||||||||| Sbjct: 74613 caaggctggctggctggctg 74594 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,026,380 Number of Sequences: 3902068 Number of extensions: 3026380 Number of successful extensions: 74679 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74529 Number of HSP's gapped (non-prelim): 150 length of query: 386 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 364 effective length of database: 17,147,199,772 effective search space: 6241580717008 effective search space used: 6241580717008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)