>MTB_STRPU (Q27287) Metallothionein-B (MTB)|
          Length = 65

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = -1

Query: 301 CKYGSECGCLSGCCVVFCIVGRPVTDG*V--PCLVVLIGYCLH*CRCSTFPSCRDG 140
           CK G+EC C    C   C +G+   DG     C       C   C C +  SC +G
Sbjct: 9   CKEGNECACTGQDC---CTIGKCCKDGTCCGKCSNAACKTCADGCTCGSGCSCTEG 61

>MTA_STRPU (P04734) Metallothionein-A (MTA)|
          Length = 64

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = -1

Query: 301 CKYGSECGCLSGCCVVFCIVGRPVTDG*VPCLVVLIG---YCLH*CRCSTFPSCRDG 140
           CK G EC C    C   C  G    DG   C  +       C + C+C +  SC +G
Sbjct: 9   CKEGKECACFGQDC---CKTGECCKDG--TCCGICTNAACKCANGCKCGSGCSCTEG 60

>USH_DROME (Q9VPQ6) Zinc-finger protein ush (Protein U-shaped)|
          Length = 1191

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +2

Query: 53   MSQNNTDPTGTGNNK*HDSSD----IFN*EYCNPIPT 151
            +SQ    PTG      HDS D    +FN +YCN + T
Sbjct: 957  LSQELVTPTGASTTTGHDSMDHPSQMFNCDYCNYVST 993

>RENT1_HUMAN (Q92900) Regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase RENT1) (Nonsense mRNA reducing
           factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)
           (hUpf1)
          Length = 1129

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 316 LPLHACKYGSECGCLSGCCVVFC 248
           LP+HAC Y   CG     CVV+C
Sbjct: 118 LPIHACSY---CGIHDPACVVYC 137

>Y562_PORGI (Q7MWN8) Hypothetical transport protein PG0562|
          Length = 558

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 180 TNVAVVLSLVVGMGLQYSQLKISELSCYLLFPVPVG 73
           T   ++LSLV  +GLQ  +L+I  +S  + F   VG
Sbjct: 18  TQTIIILSLVCALGLQLGKLRIGTISLGITFVFFVG 53

>KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-associated|
           protein 5.10) (Ultrahigh sulfur keratin-associated
           protein 5.10)
          Length = 202

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 295 YGSECG-CLSGCCVVFCIVGRPVTDG*VPCLVVLIGYCLH*CRCSTFPSC 149
           YGS CG C S CCV  C   +PV              C+  C CS+  SC
Sbjct: 31  YGSGCGGCGSSCCVPVCCC-KPVC------------CCVPACSCSSCGSC 67

>MT_ARIAR (P55946) Metallothionein (MT)|
          Length = 66

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 301 CKYGSECGCLSGCCVVFCIVGRPVTDG*VPCLVVLIGYCLH*CRCSTFPSCR 146
           C+ GS+C C  GC    C      +DG   C     G     C+C++  SC+
Sbjct: 18  CQCGSKCQCGEGCACASCKTCNCTSDG-CKCGKECTGAAS--CKCNSSCSCK 66

>NOG2_CRYGA (Q6TGJ8) Nucleolar GTP-binding protein 2|
          Length = 731

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 54  CPKIIQIQLARGTTNNMIVQIFLTENIATPSLQLGKVLQR 173
           CP I+ +      T+ ++  +   EN+ATP+  +  +L+R
Sbjct: 390 CPGIVPVSAKDSDTDTVLKGVVRVENLATPAEHIPALLER 429

>OXAA_HELHP (Q7VJY0) Inner membrane protein oxaA|
          Length = 591

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 99  YLLFPVPVGSVLFWDIN 49
           +++FP P G VL+W IN
Sbjct: 540 FIIFPFPAGLVLYWTIN 556

>NOG2_CRYNV (Q8J109) Nucleolar GTP-binding protein 2|
          Length = 720

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 54  CPKIIQIQLARGTTNNMIVQIFLTENIATPSLQLGKVLQR 173
           CP I+ +      T+ ++  +   EN+ATP+  +  +L+R
Sbjct: 380 CPGIVPVSAKDSDTDTVLKGVVRVENLATPAEHIPALLER 419

>YJ85_YEAST (P47152) Hypothetical 19.0 kDa protein in NNF1-STE24 intergenic|
           region
          Length = 169

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 253 KQHNNQTDTHIHYHIYMHVMAGTQMTLR 336
           K  N  T TH H H ++++  G Q+++R
Sbjct: 14  KVMNTHTHTHTHTHTHIYIYTGDQVSVR 41

>LITAF_XENTR (Q6P828) Lipopolysaccharide-induced tumor necrosis factor-alpha|
           factor homolog (LPS-induced TNF-alpha factor homolog)
          Length = 148

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 328 SSGYLPLHACKYGSECGCLSGCCVV-FCIVGRPVTDG*VPCLVVLIG 191
           SSG L   +C      GC+ GCC++ FCI      D   P    L+G
Sbjct: 97  SSGALAWLSCGGLCLLGCIGGCCLIPFCIDSLKDVDHYCPNCHALLG 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,918,542
Number of Sequences: 219361
Number of extensions: 1025484
Number of successful extensions: 2578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2571
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)