ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_765732.1| Giardia lamblia ATCC 50803 hypothetical protein... 48 0.018
2gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.29
3gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.29
4dbj|AK061869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
6dbj|AK120426.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
7dbj|AK099731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
8dbj|AK104745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
9dbj|AK073321.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
10dbj|AK060130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
11gb|AC164559.3| Mus musculus BAC clone RP23-198H17 from chromosom... 42 1.1
12gb|AC127267.3| Mus musculus BAC clone RP23-401H14 from chromosom... 42 1.1
13gb|AC117594.8| Mus musculus chromosome 3, clone RP23-335D16, com... 42 1.1
14emb|AL935165.5| Zebrafish DNA sequence from clone CH211-198D18 i... 42 1.1
15emb|AL928906.4| Zebrafish DNA sequence from clone RP71-34G2 in l... 42 1.1
16dbj|AK139766.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 42 1.1
17gb|AC027026.11| Homo sapiens chromosome 11, clone RP11-589F4, co... 42 1.1
18gb|AC163104.2| Mus musculus BAC clone RP23-332A4 from chromosome... 40 4.5
19gb|AC142146.3| Mus musculus BAC clone RP24-74D8 from chromosome ... 40 4.5
20gb|AC157608.10| Mus musculus chromosome 5, clone RP23-343F16, co... 40 4.5
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.5
22gb|AC125042.4| Mus musculus BAC clone RP23-339G10 from chromosom... 40 4.5
23emb|CT025568.7| Mouse DNA sequence from clone RP23-374L19 on chr... 40 4.5
24gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, co... 40 4.5
25gb|AC127311.3| Mus musculus BAC clone RP23-301C7 from 6, complet... 40 4.5
26ref|XM_651785.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 4.5
27gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, comple... 40 4.5
28gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, compl... 40 4.5
29gb|AC090587.10| Homo sapiens chromosome 11, clone RP11-348A20, c... 40 4.5
30emb|CR388153.5| Zebrafish DNA sequence from clone CH211-154I17 i... 40 4.5
31gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, compl... 40 4.5
32emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 i... 40 4.5
33gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.5
34ref|XM_944220.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 4.5
35ref|XM_931395.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 4.5
36gb|AC157513.2| Mus musculus BAC clone RP24-280G4 from chromosome... 40 4.5
37gb|AF375052.1|AF375052 Oryza sativa vacuolar ATPase B subunit mR... 40 4.5
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
39dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
41gb|AC007502.6| Homo sapiens chromosome 16 clone RP11-98C8, compl... 40 4.5
42emb|BX088526.6| Zebrafish DNA sequence from clone CH211-51H9 in ... 40 4.5
43gb|AC074088.5| Homo sapiens BAC clone RP11-122B24 from 4, comple... 40 4.5
44gb|AC012491.7| Homo sapiens BAC clone RP11-212J19 from 2, comple... 40 4.5
45dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 40 4.5
46dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
47dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
48emb|AJ417529.1|OSA417529 Oryza sativa partial mRNA for putative ... 40 4.5
49emb|AJ417526.1|OSA417526 Oryza sativa partial mRNA for putative ... 40 4.5
50dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
51dbj|AB022221.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.5
52dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
53dbj|AK120803.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
54dbj|AK099907.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
55dbj|AK064802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
56dbj|AK060816.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
57gb|AC173470.3| Dasypus novemcinctus clone VMRC5-164N1, complete ... 40 4.5
58emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chr... 40 4.5
59emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chr... 40 4.5
60gb|U95626.1|HSU95626 Homo sapiens ccr2b (ccr2), ccr2a (ccr2), cc... 40 4.5
61dbj|AB055106.1| Oryza sativa (japonica cultivar-group) V-ATPase ... 40 4.5 
>ref|XM_765732.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_456_20463_41396)
             partial mRNA
          Length = 20934

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 254   aacaacacaacaaccagacagaca 277
             ||||||||||||||||||||||||
Sbjct: 20737 aacaacacaacaaccagacagaca 20760
to top
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19,
              complete sequence
          Length = 176917

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 292    catatttacatgcatgtaatgg 313
              ||||||||||||||||||||||
Sbjct: 117579 catatttacatgcatgtaatgg 117600
to top
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09,
             complete sequence
          Length = 177374

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 292   catatttacatgcatgtaatgg 313
             ||||||||||||||||||||||
Sbjct: 60160 catatttacatgcatgtaatgg 60181
to top
>dbj|AK061869.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A02, full
           insert sequence
          Length = 1060

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 292 catatttacatgcatgtaatgg 313
           ||||||||||||||||||||||
Sbjct: 873 catatttacatgcatgtaatgg 852
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 292      catatttacatgcatgtaatgg 313
                ||||||||||||||||||||||
Sbjct: 20804355 catatttacatgcatgtaatgg 20804376
to top
>dbj|AK120426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095G08, full
           insert sequence
          Length = 1875

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 292 catatttacatgcatgtaatgg 313
           ||||||||||||||||||||||
Sbjct: 874 catatttacatgcatgtaatgg 853
to top
>dbj|AK099731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089N11, full
           insert sequence
          Length = 1333

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 292 catatttacatgcatgtaatgg 313
           ||||||||||||||||||||||
Sbjct: 958 catatttacatgcatgtaatgg 937
to top
>dbj|AK104745.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E05, full
           insert sequence
          Length = 1251

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 292 catatttacatgcatgtaatgg 313
           ||||||||||||||||||||||
Sbjct: 873 catatttacatgcatgtaatgg 852
to top
>dbj|AK073321.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030I04, full
           insert sequence
          Length = 1263

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 292 catatttacatgcatgtaatgg 313
           ||||||||||||||||||||||
Sbjct: 871 catatttacatgcatgtaatgg 850
to top
>dbj|AK060130.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A11, full
           insert sequence
          Length = 1251

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 292 catatttacatgcatgtaatgg 313
           ||||||||||||||||||||||
Sbjct: 873 catatttacatgcatgtaatgg 852
to top
>gb|AC164559.3| Mus musculus BAC clone RP23-198H17 from chromosome 6, complete sequence
          Length = 194636

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 38     tttctttacccatttatgtcccaaa 62
              ||||||||| |||||||||||||||
Sbjct: 164962 tttctttactcatttatgtcccaaa 164938
to top
>gb|AC127267.3| Mus musculus BAC clone RP23-401H14 from chromosome 6, complete sequence
          Length = 186704

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 38     tttctttacccatttatgtcccaaa 62
              ||||||||| |||||||||||||||
Sbjct: 116256 tttctttactcatttatgtcccaaa 116232
to top
>gb|AC117594.8| Mus musculus chromosome 3, clone RP23-335D16, complete sequence
          Length = 230457

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     gcagatttcttgggtttcttt 44
              |||||||||||||||||||||
Sbjct: 114030 gcagatttcttgggtttcttt 114010
to top
>emb|AL935165.5| Zebrafish DNA sequence from clone CH211-198D18 in linkage group 4
              Contains the cugbp2 gene for CUG triplet repeat, RNA
              binding protein 2, the 5' end of a novel gene and a CpG
              island, complete sequence
          Length = 182748

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 268    cagacagacacccacattcac 288
              |||||||||||||||||||||
Sbjct: 176639 cagacagacacccacattcac 176619
to top
>emb|AL928906.4| Zebrafish DNA sequence from clone RP71-34G2 in linkage group 7 Contains
             a novel gene, a novel gene similar to human and mouse
             ORCL6 (origin recognition complex, subunit 6 homolog-like
             (yeast)), a novel gene simlar to human and mouse VPS35
             (vacuolar protein sorting 35 (yeast)),  a novel gene
             similar to human HRH3 (histamine receptor H3), a novel
             gene similar to human and rat ARL5 (ADP-ribosylation
             factor-like 5) and a CpG island, complete sequence
          Length = 161527

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 144   tccctacaactagggaaagta 164
             |||||||||||||||||||||
Sbjct: 78658 tccctacaactagggaaagta 78638
to top
>dbj|AK139766.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
            clone:B020015N02 product:unclassifiable, full insert
            sequence
          Length = 2894

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 38   tttctttacccatttatgtcccaaa 62
            ||||||||| |||||||||||||||
Sbjct: 2888 tttctttactcatttatgtcccaaa 2864
to top
>gb|AC027026.11| Homo sapiens chromosome 11, clone RP11-589F4, complete sequence
          Length = 155376

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 180   tgcaggcaatatcctatcagg 200
             |||||||||||||||||||||
Sbjct: 48330 tgcaggcaatatcctatcagg 48310
to top
>gb|AC163104.2| Mus musculus BAC clone RP23-332A4 from chromosome 6, complete sequence
          Length = 195179

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    actaccatatttacatgcat 306
              ||||||||||||||||||||
Sbjct: 169150 actaccatatttacatgcat 169169
to top
>gb|AC142146.3| Mus musculus BAC clone RP24-74D8 from chromosome 9, complete sequence
          Length = 170429

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 107    agttcagatatttttaactgagaa 130
              ||||||||||||||| ||||||||
Sbjct: 139700 agttcagatatttttgactgagaa 139723
to top
>gb|AC157608.10| Mus musculus chromosome 5, clone RP23-343F16, complete sequence
          Length = 204556

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    ttgggtttctttacccattt 52
             ||||||||||||||||||||
Sbjct: 33687 ttgggtttctttacccattt 33668
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 96       aataacatgatagttcagatattt 119
                ||||||||||| ||||||||||||
Sbjct: 13814490 aataacatgatcgttcagatattt 13814513
to top
>gb|AC125042.4| Mus musculus BAC clone RP23-339G10 from chromosome 9, complete sequence
          Length = 219183

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ttgggtttctttacccattt 52
              ||||||||||||||||||||
Sbjct: 205461 ttgggtttctttacccattt 205480
to top
>emb|CT025568.7| Mouse DNA sequence from clone RP23-374L19 on chromosome 9, complete
              sequence
          Length = 183916

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    agttcagatatttttaactgagaa 130
              ||||||||||||||| ||||||||
Sbjct: 122190 agttcagatatttttgactgagaa 122167
to top
>gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, complete sequence
          Length = 209936

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    ttcagatatttttaactgag 128
              ||||||||||||||||||||
Sbjct: 133213 ttcagatatttttaactgag 133232
to top
>gb|AC127311.3| Mus musculus BAC clone RP23-301C7 from 6, complete sequence
          Length = 224182

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    actaccatatttacatgcat 306
              ||||||||||||||||||||
Sbjct: 137001 actaccatatttacatgcat 136982
to top
>ref|XM_651785.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (7.t00037)
            partial mRNA
          Length = 3951

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 99   aacatgatagttcagatattttta 122
            ||||||||| ||||||||||||||
Sbjct: 2879 aacatgataattcagatattttta 2902
to top
>gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, complete sequence
          Length = 171058

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   atatttttaactgagaatattgca 137
             ||||||||| ||||||||||||||
Sbjct: 94580 atatttttagctgagaatattgca 94603
to top
>gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, complete sequence
          Length = 165651

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    cagatatttttaactgagaa 130
              ||||||||||||||||||||
Sbjct: 149373 cagatatttttaactgagaa 149354
to top
>gb|AC090587.10| Homo sapiens chromosome 11, clone RP11-348A20, complete sequence
          Length = 165459

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    acaaccagacagacacccac 282
              ||||||||||||||||||||
Sbjct: 104148 acaaccagacagacacccac 104167
to top
>emb|CR388153.5| Zebrafish DNA sequence from clone CH211-154I17 in linkage group 15,
            complete sequence
          Length = 27048

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   tttaaagatacatggcagat 29
            ||||||||||||||||||||
Sbjct: 986  tttaaagatacatggcagat 1005
to top
>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence
          Length = 185437

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    gacagacacccacattcact 289
              ||||||||||||||||||||
Sbjct: 110109 gacagacacccacattcact 110090
to top
>emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 in linkage group 10,
             complete sequence
          Length = 162115

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   tgcagaaaacaacacaacaa 266
             ||||||||||||||||||||
Sbjct: 40181 tgcagaaaacaacacaacaa 40200
to top
>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0048D11, from chromosome 3, complete sequence
          Length = 158911

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    aataacatgatagttcagatattt 119
             ||||||||||| ||||||||||||
Sbjct: 91018 aataacatgatcgttcagatattt 91041
to top
>ref|XM_944220.1| PREDICTED: Homo sapiens hypothetical protein LOC650485 (LOC650485),
           mRNA
          Length = 570

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 263 acaaccagacagacacccac 282
           ||||||||||||||||||||
Sbjct: 7   acaaccagacagacacccac 26
to top
>ref|XM_931395.1| PREDICTED: Homo sapiens hypothetical protein LOC643189 (LOC643189),
           mRNA
          Length = 570

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 263 acaaccagacagacacccac 282
           ||||||||||||||||||||
Sbjct: 7   acaaccagacagacacccac 26
to top
>gb|AC157513.2| Mus musculus BAC clone RP24-280G4 from chromosome 9, complete sequence
          Length = 177728

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    ttgggtttctttacccattt 52
             ||||||||||||||||||||
Sbjct: 87348 ttgggtttctttacccattt 87367
to top
>gb|AF375052.1|AF375052 Oryza sativa vacuolar ATPase B subunit mRNA, complete cds
          Length = 1947

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    aagtttaaagatacatggca 26
            ||||||||||||||||||||
Sbjct: 1802 aagtttaaagatacatggca 1783
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 295      atttacatgcatgtaatggcaggt 318
                |||||||||| |||||||||||||
Sbjct: 26185578 atttacatgcttgtaatggcaggt 26185555
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 7        aagtttaaagatacatggca 26
                ||||||||||||||||||||
Sbjct: 21615533 aagtttaaagatacatggca 21615552
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 96       aataacatgatagttcagatattt 119
                ||||||||||| ||||||||||||
Sbjct: 13809465 aataacatgatcgttcagatattt 13809488
to top
>gb|AC007502.6| Homo sapiens chromosome 16 clone RP11-98C8, complete sequence
          Length = 158696

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   cagatatttttaactgagaa 130
             ||||||||||||||||||||
Sbjct: 20848 cagatatttttaactgagaa 20829
to top
>emb|BX088526.6| Zebrafish DNA sequence from clone CH211-51H9 in linkage group 8,
             complete sequence
          Length = 187161

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   atatttacatgcatgtaatg 312
             ||||||||||||||||||||
Sbjct: 18759 atatttacatgcatgtaatg 18740
to top
>gb|AC074088.5| Homo sapiens BAC clone RP11-122B24 from 4, complete sequence
          Length = 69463

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    tttctttacccatttatgtc 57
             ||||||||||||||||||||
Sbjct: 43090 tttctttacccatttatgtc 43109
to top
>gb|AC012491.7| Homo sapiens BAC clone RP11-212J19 from 2, complete sequence
          Length = 206504

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 11     ttaaagatacatggcagatttctt 34
              |||||||||||||||||| |||||
Sbjct: 118808 ttaaagatacatggcagaattctt 118785
to top
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    caggcaatatcctatcagga 201
              ||||||||||||||||||||
Sbjct: 619743 caggcaatatcctatcagga 619762
to top
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0567G03
          Length = 196834

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      aagtttaaagatacatggca 26
              ||||||||||||||||||||
Sbjct: 172717 aagtttaaagatacatggca 172736
to top
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0062E01
          Length = 161804

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     aagtttaaagatacatggca 26
             ||||||||||||||||||||
Sbjct: 14464 aagtttaaagatacatggca 14483
to top
>emb|AJ417529.1|OSA417529 Oryza sativa partial mRNA for putative vacuolar ATPase B subunit
           (xd19 gene)
          Length = 494

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   aagtttaaagatacatggca 26
           ||||||||||||||||||||
Sbjct: 281 aagtttaaagatacatggca 262
to top
>emb|AJ417526.1|OSA417526 Oryza sativa partial mRNA for putative vacuolar H+-ATPase B subunit
           (xd14 gene)
          Length = 610

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   aagtttaaagatacatggca 26
           ||||||||||||||||||||
Sbjct: 397 aagtttaaagatacatggca 378
to top
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1191_A10
          Length = 140643

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 295    atttacatgcatgtaatggcaggt 318
              |||||||||| |||||||||||||
Sbjct: 129509 atttacatgcttgtaatggcaggt 129486
to top
>dbj|AB022221.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSD23
          Length = 33479

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   atatttttaactgagaatat 133
             ||||||||||||||||||||
Sbjct: 23649 atatttttaactgagaatat 23630
to top
>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1014_E06
          Length = 112241

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 295   atttacatgcatgtaatggcaggt 318
             |||||||||| |||||||||||||
Sbjct: 18503 atttacatgcttgtaatggcaggt 18480
to top
>dbj|AK120803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013B14, full
            insert sequence
          Length = 1283

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 295  atttacatgcatgtaatggcaggt 318
            |||||||||| |||||||||||||
Sbjct: 1157 atttacatgcttgtaatggcaggt 1180
to top
>dbj|AK099907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116A19, full
            insert sequence
          Length = 1940

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    aagtttaaagatacatggca 26
            ||||||||||||||||||||
Sbjct: 1795 aagtttaaagatacatggca 1776
to top
>dbj|AK064802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D11, full
            insert sequence
          Length = 1933

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    aagtttaaagatacatggca 26
            ||||||||||||||||||||
Sbjct: 1784 aagtttaaagatacatggca 1765
to top
>dbj|AK060816.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A03, full
            insert sequence
          Length = 1406

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    aagtttaaagatacatggca 26
            ||||||||||||||||||||
Sbjct: 1261 aagtttaaagatacatggca 1242
to top
>gb|AC173470.3| Dasypus novemcinctus clone VMRC5-164N1, complete sequence
          Length = 75140

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 27    gatttcttgggtttctttacccatttat 54
             |||||||||||||||||| ||| |||||
Sbjct: 54688 gatttcttgggtttcttttcccttttat 54715
to top
>emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chromosome 4, complete
             sequence
          Length = 236166

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   tatttacatgcatgtaatgg 313
             ||||||||||||||||||||
Sbjct: 79803 tatttacatgcatgtaatgg 79822
to top
>emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chromosome 12, complete
              sequence
          Length = 179748

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    catatttacatgcatgtaat 311
              ||||||||||||||||||||
Sbjct: 121603 catatttacatgcatgtaat 121622
to top
>gb|U95626.1|HSU95626 Homo sapiens ccr2b (ccr2), ccr2a (ccr2), ccr5 (ccr5) and ccr6 (ccr6)
              genes, complete cds, and lactoferrin (lactoferrin) gene,
              partial cds, complete sequence
          Length = 143068

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    gacagacacccacattcact 289
              ||||||||||||||||||||
Sbjct: 142163 gacagacacccacattcact 142144
to top
>dbj|AB055106.1| Oryza sativa (japonica cultivar-group) V-ATPase B gene for vacuolar
            ATPase B subunit, complete cds
          Length = 6033

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    aagtttaaagatacatggca 26
            ||||||||||||||||||||
Sbjct: 5510 aagtttaaagatacatggca 5491


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,452,470
Number of Sequences: 3902068
Number of extensions: 3452470
Number of successful extensions: 80611
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80382
Number of HSP's gapped (non-prelim): 229
length of query: 340
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 318
effective length of database: 17,147,199,772
effective search space: 5452809527496
effective search space used: 5452809527496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top