ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58f02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB161683.1| Triticum aestivum WCSP3 mRNA for cold shock domain protein 3, complete cds Length = 1025 Score = 385 bits (194), Expect = e-104 Identities = 285/312 (91%), Gaps = 5/312 (1%) Strand = Plus / Minus Query: 2 gacaccaaacttgacttcgataacttagttcatccaatacataagagatagatctgtgtc 61 ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| Sbjct: 1008 gacaccaaacttgacttcgataacttagtccatccaacacata---gatagatctgtgtc 952 Query: 62 ctcatcacagagacacaacaaaataacttggatctttaacggacaaaccaccagcaattc 121 ||||||||||||| ||| |||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 951 ctcatcacagagagacagcaaaataacttggatctt-aacgaacacaccaccagcaattc 893 Query: 122 ttctggatccaagctcgcatggagcagcacggggaaacgctacggcgactaatactagta 181 ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 892 ttctggaaccaagctcgcatcgagcagcagggggaaacgctacggcgactaatactagta 833 Query: 182 ctgataggtata-ggtatgacttgatgcaggatcaggagataggaaaaggagcgaagggg 240 |||||||||||| ||||||||||| ||||| |||||||| |||| |||||||| | || Sbjct: 832 ctgataggtatagggtatgacttgctgcagaatcaggaggtaggtaaaggagcaagggta 773 Query: 241 aagggggcactcagatctgacgggctgcgccgcttagtgggccttgttggggcactcgcg 300 || ||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||| Sbjct: 772 aacggggcactcagatctgaagagctgtgccgcctagtgggccttgttggggcactcgcg 713 Query: 301 ggagaagtggcc 312 |||||||||||| Sbjct: 712 ggagaagtggcc 701
>dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock protein-1, complete cds Length = 1029 Score = 353 bits (178), Expect = 2e-94 Identities = 271/299 (90%), Gaps = 6/299 (2%) Strand = Plus / Minus Query: 17 ttcgataacttagttcatccaatacataagagatagatctgtgtcctcatcacagagaca 76 |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| | Sbjct: 1008 ttcgataacttagtccatccaacacata---gatagatctgtgtcctcatcacagagaga 952 Query: 77 caacaaaataacttggatcttta--acggacaaaccaccagcaattcttctggatccaag 134 ||||||||||||||||||||| | ||| ||| ||||||||||||||||||||| ||||| Sbjct: 951 caacaaaataacttggatcttaacgacgaacacaccaccagcaattcttctggaaccaag 892 Query: 135 ctcgcatggagcagcacggggaaacgctacggcgactaatactagtactgataggtata- 193 |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 891 ctcggatcgagcagcagggggaaacgctacggcgactaatactagtactgataggtatag 832 Query: 194 ggtatgacttgatgcaggatcaggagataggaaaaggagcgaaggggaagggggcactca 253 ||||||||||| ||||| |||||||| |||| |||||||||| || || |||||||||| Sbjct: 831 ggtatgacttgctgcagaatcaggaggtaggtaaaggagcgagggtaaacggggcactca 772 Query: 254 gatctgacgggctgcgccgcttagtgggccttgttggggcactcgcgggagaagtggcc 312 ||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 771 gatctgaagagctgtgccgcctagtgggccttgttggggcactcgcgggagaagtggcc 713
>dbj|AB161682.1| Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds Length = 990 Score = 182 bits (92), Expect = 4e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 161 ctacggcgactaatactagtactgataggtataggtatgacttgatgcaggatcaggaga 220 |||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||| | Sbjct: 789 ctacggcgacatatactaatactgataggtataggtatgacttgctgcagagtcaggcgg 730 Query: 221 taggaaaaggagcgaaggggaagggggcactcagatctgacgggctgcgccgcttagtgg 280 |||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||| | Sbjct: 729 taggaaaaggagcgaaggggaacggggaactcagatctgacgggcagcgccgcctagttg 670 Query: 281 gccttgttggggcactcgcgggagaagtggcc 312 | |||||||||||||||||| ||||||||||| Sbjct: 669 gtcttgttggggcactcgcgcgagaagtggcc 638 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 109 ccaccagcaattcttctggatccaagctcgcat 141 |||||| |||| |||||||| |||||||||||| Sbjct: 857 ccaccaacaatacttctggaaccaagctcgcat 825
>dbj|AB158409.1| Triticum aestivum GRP mRNA for putative glycine-rich protein, complete cds Length = 996 Score = 182 bits (92), Expect = 4e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 161 ctacggcgactaatactagtactgataggtataggtatgacttgatgcaggatcaggaga 220 |||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||| | Sbjct: 789 ctacggcgacatatactaatactgataggtataggtatgacttgctgcagagtcaggcgg 730 Query: 221 taggaaaaggagcgaaggggaagggggcactcagatctgacgggctgcgccgcttagtgg 280 |||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||| | Sbjct: 729 taggaaaaggagcgaaggggaacggggaactcagatctgacgggcagcgccgcctagttg 670 Query: 281 gccttgttggggcactcgcgggagaagtggcc 312 | |||||||||||||||||| ||||||||||| Sbjct: 669 gtcttgttggggcactcgcgcgagaagtggcc 638 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 109 ccaccagcaattcttctggatccaagctcgcat 141 |||||| |||| |||||||| |||||||||||| Sbjct: 857 ccaccaacaatacttctggaaccaagctcgcat 825
>emb|AJ234726.1|HVU234726 Hordeum vulgare genomic DNA fragment; clone MWG2034.rev Length = 312 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 147 agcacggggaaacgctacggcgactaatactagtactgataggtataggtatgacttg 204 ||||||||| ||| |||||||||| |||||| |||||||||||||| |||||||||| Sbjct: 58 agcacggggtaacactacggcgacatatactaatactgataggtatatgtatgacttg 1
>gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequence Length = 125364 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 tctgtgtcctcatcacagagac 75 |||||||||||||||||||||| Sbjct: 77211 tctgtgtcctcatcacagagac 77232
>gb|AC008207.3|AC008207 Drosophila melanogaster, chromosome 3R, region 96C-96D, BAC clone BACR17E12, complete sequence Length = 184887 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 tcgataacttagttcatccaat 39 |||||||||||||||||||||| Sbjct: 119356 tcgataacttagttcatccaat 119335
>gb|AC008208.5|AC008208 Drosophila melanogaster, chromosome 3R, region 96D-96D, BAC clone BACR06L08, complete sequence Length = 170220 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 tcgataacttagttcatccaat 39 |||||||||||||||||||||| Sbjct: 55298 tcgataacttagttcatccaat 55277
>gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89 of 118 of the complete sequence Length = 307443 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 tcgataacttagttcatccaat 39 |||||||||||||||||||||| Sbjct: 59034 tcgataacttagttcatccaat 59013
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 tctgtgtcctcatcacagagac 75 |||||||||||||||||||||| Sbjct: 630553 tctgtgtcctcatcacagagac 630574
>gb|BT016623.1| Zea mays clone Contig456 mRNA sequence Length = 1039 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 284 ttgttggggcactcgcgggagaagtggcc 312 ||||||||||| |||||||||| |||||| Sbjct: 678 ttgttggggcagtcgcgggagatgtggcc 650
>gb|AC118545.20| Mus musculus strain C57BL/6J clone rp23-324o14 map 17, complete sequence Length = 236365 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 gatctgtgtcctcatcacaga 72 ||||||||||||||||||||| Sbjct: 96287 gatctgtgtcctcatcacaga 96307
>gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic sequence Length = 338517 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 218 agataggaaaaggagcgaaggggaagggg 246 ||||||||| |||| |||||||||||||| Sbjct: 313453 agataggaagaggaacgaaggggaagggg 313481
>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic sequence Length = 363675 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 218 agataggaaaaggagcgaaggggaagggg 246 ||||||||| |||| |||||||||||||| Sbjct: 328876 agataggaagaggaacgaaggggaagggg 328904
>gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic sequence Length = 328871 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 218 agataggaaaaggagcgaaggggaagggg 246 ||||||||| |||| |||||||||||||| Sbjct: 314432 agataggaagaggaacgaaggggaagggg 314460
>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic sequence Length = 336776 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 218 agataggaaaaggagcgaaggggaagggg 246 ||||||||| |||| |||||||||||||| Sbjct: 307977 agataggaagaggaacgaaggggaagggg 308005
>emb|AL805909.5| Human DNA sequence from clone DAQB-218D23 on chromosome 6 Contains the HCG22 gene for HLA complex group 22 and 1 CpG island, complete sequence Length = 85801 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 218 agataggaaaaggagcgaaggggaagggg 246 ||||||||| |||| |||||||||||||| Sbjct: 67484 agataggaagaggaacgaaggggaagggg 67456
>gb|AY104445.1| Zea mays PCO063886 mRNA sequence Length = 540 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 284 ttgttggggcactcgcgggagaagtggcc 312 ||||||||||| |||||||||| |||||| Sbjct: 191 ttgttggggcagtcgcgggagatgtggcc 163
>gb|AC004196.1|AC004196 Homo sapiens clone UWGC:y24c079 from 6p21, complete sequence Length = 41308 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 218 agataggaaaaggagcgaaggggaagggg 246 ||||||||| |||| |||||||||||||| Sbjct: 18797 agataggaagaggaacgaaggggaagggg 18825
>gb|AC091777.26| Mus musculus strain C57BL/6J chromosome 17 clone rp23-355b17, complete sequence Length = 216109 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 gatctgtgtcctcatcacaga 72 ||||||||||||||||||||| Sbjct: 197660 gatctgtgtcctcatcacaga 197680
>ref|XM_955512.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial mRNA Length = 552 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 ttggggcactcgcgggagaagtggccag 314 |||||||| || |||||||||||||||| Sbjct: 473 ttggggcagtcacgggagaagtggccag 446
>ref|XM_331314.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial mRNA Length = 552 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 ttggggcactcgcgggagaagtggccag 314 |||||||| || |||||||||||||||| Sbjct: 473 ttggggcagtcacgggagaagtggccag 446
>emb|AL139339.22| Human DNA sequence from clone RP11-225H22 on chromosome 10 Contains the 3' end of the PDCD11 gene for programmed cell death 11, the 5' end of the NEURL gene for neuralized-like (Drosophila), two novel genes, the FAM26A gene for family with sequence similarity 26, member A, the FAM26B gene for family with sequence similarity 26, member B, the FAM26C gene for family with sequence similarity 26, member C and three CpG islands, complete sequence Length = 103826 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 atctgtgtcctcatcacaga 72 |||||||||||||||||||| Sbjct: 7043 atctgtgtcctcatcacaga 7062
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 aaaataacttggatctttaa 100 |||||||||||||||||||| Sbjct: 367400 aaaataacttggatctttaa 367381 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,569,121 Number of Sequences: 3902068 Number of extensions: 2569121 Number of successful extensions: 62595 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62543 Number of HSP's gapped (non-prelim): 46 length of query: 314 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 292 effective length of database: 17,147,199,772 effective search space: 5006982333424 effective search space used: 5006982333424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
