ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58e08 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 121 bits (303), Expect = 5e-28 Identities = 64/75 (85%), Positives = 68/75 (90%), Gaps = 1/75 (1%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPD 206 IPEVIGKEIEKATSSIFPLQNV+VRKVKILKAPKFDLGKLMEVHGDY KED+G KLDRP Sbjct: 188 IPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPA 247 Query: 205 GDEVIPGAEEVAAAE 161 DE + G +EVAAAE Sbjct: 248 EDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 114 bits (285), Expect = 6e-26 Identities = 57/73 (78%), Positives = 63/73 (86%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDG 203 IPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFD+GKLMEVHGDY EDVGVKLDRP Sbjct: 188 IPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-A 246 Query: 202 DEVIPGAEEVAAA 164 +E P A EV A Sbjct: 247 EEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 110 bits (275), Expect = 8e-25 Identities = 53/72 (73%), Positives = 60/72 (83%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDG 203 IPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFDLGKLMEVHGDY ED+G KLDRP Sbjct: 188 IPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAE 247 Query: 202 DEVIPGAEEVAA 167 + V E + A Sbjct: 248 EAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 104 bits (259), Expect = 6e-23 Identities = 51/74 (68%), Positives = 60/74 (81%), Gaps = 1/74 (1%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPD 206 IPE IG+EIEKAT I+PLQNV++RKVKILKAPKFDLGKLMEVHGDY EDVGVK+DRP Sbjct: 188 IPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPA 247 Query: 205 GDEVIPGAEEVAAA 164 + ++ E+ A Sbjct: 248 DETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 102 bits (253), Expect = 3e-22 Identities = 53/74 (71%), Positives = 60/74 (81%), Gaps = 1/74 (1%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPD 206 IPE IGK+IEKAT I+PLQNV++RKVKILKAPKFDL KLMEVHGDY EDVGVK+DRP Sbjct: 189 IPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP- 247 Query: 205 GDEVIPGAEEVAAA 164 DEV+ E+ A Sbjct: 248 ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 81.6 bits (200), Expect = 4e-16 Identities = 40/56 (71%), Positives = 48/56 (85%), Gaps = 1/56 (1%) Frame = -1 Query: 382 IPEVIGKEIEKATSS-IFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 218 IPEVIGKEI++ S I+PLQ+ ++RKVKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 185 IPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 79.7 bits (195), Expect = 2e-15 Identities = 40/55 (72%), Positives = 47/55 (85%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 218 IPEVIG+EIE+AT SIFPLQNV VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 188 IPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 79.0 bits (193), Expect = 3e-15 Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 9/71 (12%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDV 230 IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ +D Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDT 247 Query: 229 GVKLDRPDGDE 197 G K++R DG E Sbjct: 248 GAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 78.6 bits (192), Expect = 3e-15 Identities = 39/71 (54%), Positives = 51/71 (71%), Gaps = 9/71 (12%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDV 230 IP+ +GK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ +D Sbjct: 188 IPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDT 247 Query: 229 GVKLDRPDGDE 197 G K++R DG E Sbjct: 248 GAKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 78.2 bits (191), Expect = 5e-15 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 224 IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 78.2 bits (191), Expect = 5e-15 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 224 IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 78.2 bits (191), Expect = 5e-15 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 224 IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 78.2 bits (191), Expect = 5e-15 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 224 IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 77.8 bits (190), Expect = 6e-15 Identities = 39/72 (54%), Positives = 51/72 (70%), Gaps = 10/72 (13%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----------YKED 233 IP+ +GK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ + D Sbjct: 188 IPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGD 247 Query: 232 VGVKLDRPDGDE 197 G K++R DG E Sbjct: 248 TGAKVERADGYE 259
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 77.4 bits (189), Expect = 8e-15 Identities = 38/55 (69%), Positives = 48/55 (87%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 218 IPEVIG+ IEKAT++I+PLQNV+VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 188 IPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 77.0 bits (188), Expect = 1e-14 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 224 IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 185 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 244 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 245 KVERADGYE 253
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 77.0 bits (188), Expect = 1e-14 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 224 IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 77.0 bits (188), Expect = 1e-14 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 224 IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 77.0 bits (188), Expect = 1e-14 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 224 IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 76.6 bits (187), Expect = 1e-14 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 224 IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 76.6 bits (187), Expect = 1e-14 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 224 IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 75.9 bits (185), Expect = 2e-14 Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 7/69 (10%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 224 IP+ IGK++EKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G Sbjct: 188 IPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 247 Query: 223 KLDRPDGDE 197 K++R DG E Sbjct: 248 KVERADGYE 256
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 73.9 bits (180), Expect = 9e-14 Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 1/65 (1%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPD 206 IPEVIG+EIEK+T +IFPLQNV++RKVK+LK PKFD G L+ +HG+ E+ G K+ Sbjct: 188 IPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGF 247 Query: 205 GDEVI 191 D V+ Sbjct: 248 KDVVL 252
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 72.8 bits (177), Expect = 2e-13 Identities = 33/46 (71%), Positives = 39/46 (84%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 245 IPEVI KEIE AT IFPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 188 IPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 72.8 bits (177), Expect = 2e-13 Identities = 33/46 (71%), Positives = 39/46 (84%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 245 IPEVI KEIE AT IFPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 188 IPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 71.6 bits (174), Expect = 4e-13 Identities = 36/64 (56%), Positives = 46/64 (71%), Gaps = 2/64 (3%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDRP 209 IP+ IGK+IEK S ++PLQ VY+RKVKI+K PK DLG+L ++HGD G K+DRP Sbjct: 186 IPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRP 245 Query: 208 DGDE 197 D E Sbjct: 246 DDYE 249
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 70.1 bits (170), Expect = 1e-12 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 8/70 (11%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVG 227 IP+ IGK+IEK+ I+PL +V + KVK+LK PKFD+GKLME+HG+ + G Sbjct: 188 IPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGG 247 Query: 226 VKLDRPDGDE 197 K+DR DG E Sbjct: 248 EKVDRVDGYE 257
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 65.1 bits (157), Expect = 4e-11 Identities = 27/46 (58%), Positives = 37/46 (80%) Frame = -1 Query: 382 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 245 +P+ I K+IEKA ++PL +VY+RKVK+LK P+FDL LME+HGD Sbjct: 191 LPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 64.7 bits (156), Expect = 5e-11 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 8/66 (12%) Frame = -1 Query: 370 IGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLD 215 I K+IEK+ I+PL +VY+RKVK+LK P+FD+ KL+E+HGD G +D Sbjct: 195 IAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVID 254 Query: 214 RPDGDE 197 RP+G E Sbjct: 255 RPEGYE 260
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 32.0 bits (71), Expect = 0.37 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -1 Query: 370 IGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLME 257 + EI +A I+PL+ + K K+LK P+ +LGK +E Sbjct: 165 LANEIFEAAKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 30.8 bits (68), Expect = 0.83 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 370 IGKEIEKATSSIFPLQNVYVRKVKILKAPK 281 I EI K I+PL+ +RK+K+L+ P+ Sbjct: 166 IAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 370 IGKEIEKATSSIFPLQNVYVRKVKILKAPK 281 + +I + I+PL+ V + K K+LKAPK Sbjct: 167 LSNDIFQEAKKIYPLRKVEIEKTKLLKAPK 196
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 373 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 197 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 196 VIPGAEEV 173 + PG ++ Sbjct: 867 LPPGVNQL 874
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 370 IGKEIEKATSSIFPLQNVYVRKVKILKAPK 281 I EI K I+PL+ +RK+K+L P+ Sbjct: 167 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 196
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 373 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 197 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 196 VIPGAEEV 173 + PG ++ Sbjct: 847 LPPGVNQL 854
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 370 IGKEIEKATSSIFPLQNVYVRKVKILKAP 284 I EI K I+P++ VRK+K+L P Sbjct: 170 IASEIAKEARKIYPIKRAEVRKIKVLAEP 198
>COBQ_VIBPA (Q87HN1) Cobyric acid synthase| Length = 483 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Frame = -1 Query: 367 GKEIEKATSSIFPLQNVYVRKVKILKAPKFDL---------GKLMEVHGDYKEDVGVKLD 215 G++I+KA I P + LK+ +D GK+M + G Y+ +G +D Sbjct: 286 GEKIDKADLIILPGTKSVRDDLAYLKSQGWDKDILRHIRLGGKVMGICGGYQM-LGKTID 344 Query: 214 RPDGDEVIPGAEE 176 PDG E PG+ E Sbjct: 345 DPDGVEGEPGSSE 357
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 370 IGKEIEKATSSIFPLQNVYVRKVKILKAPK 281 I EI K I+PL+ +RK+K+L P+ Sbjct: 168 IAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197
>OAS3_HUMAN (Q9Y6K5) 2'-5'-oligoadenylate synthetase 3 (EC 2.7.7.-)| ((2-5')oligo(A) synthetase 3) (2-5A synthetase 3) (p100 OAS) (p100OAS) Length = 1087 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = +2 Query: 188 RNDLISIRPVKLHTNILLVVTVHLHELSQVKLRGLQDLHLADVHVLE 328 R + ++IRP KL ILLV H QV L+GL L V+ LE Sbjct: 188 RRNFVNIRPAKLKNLILLV----KHWYHQVCLQGLWKETLPPVYALE 230
>YR297_MIMIV (Q5UPY3) Hypothetical protein R297| Length = 168 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = +1 Query: 46 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQNSDFY 153 ++Y+ NQP++L T+ P ++ + + + N +FY Sbjct: 80 KQYNYNQPNRLQTRSVRPNYYSGYRYNNRTGNQEFY 115
>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae| Length = 193 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 370 IGKEIEKATSSIFPLQNVYVRKVKILKAP 284 + +I + I+PL+ V V K K+LKAP Sbjct: 164 LSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192
>Y241_MYCGE (P47483) Hypothetical protein MG241| Length = 620 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +1 Query: 46 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQ---NSDFYFS 159 +KYS NQP KL+ T +Y L K++Q +DF+F+ Sbjct: 322 EKYSTNQPQKLSLNST-----VYVLQTKQKQFFLKNDFFFN 357
>S12A1_RABIT (P55015) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1099 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -1 Query: 316 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGV---KLDRPDGDEVIPGAEEVAAAE*KNRS 146 Y R + PK + L+E+H ++V V DR E +PG E E N++ Sbjct: 113 YYRNTGSVSGPKVNRPSLLEIHEQLAKNVAVTPGSADRVANGEGMPGEEHAENKEEDNKA 172
>HATB_ARATH (Q9FJT8) Histone acetyltransferase type B catalytic subunit (EC| 2.3.1.48) (HAT B) Length = 467 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +1 Query: 91 TTPRWHIYHLLDKKQQNSD 147 T P WH+Y L+ KK++ D Sbjct: 203 TDPDWHLYLLIQKKEEKED 221
>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae| Length = 211 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = -1 Query: 373 VIGK---EIEKATSSIFPLQNVYVRKVKILKAP 284 V+GK EI K I+P++ V +RK+++L P Sbjct: 165 VLGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197
>DPO1_BACSU (O34996) DNA polymerase I (EC 2.7.7.7) (POL I)| Length = 880 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -1 Query: 280 FDLGKLMEVHGDYKEDVGVKLDR-PDGDEVIPGAEEVAAAE*KNRSRYFAASYLEDDICA 104 FD GK HG +KE G + P+ E +P E+ A SRY Y DDI Sbjct: 60 FDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDA--YQISRYELEQYEADDIIG 117 Query: 103 T 101 T Sbjct: 118 T 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,174,324 Number of Sequences: 219361 Number of extensions: 713796 Number of successful extensions: 1857 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 1800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1853 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
